BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G32210.1 Length=654 Score E Sequences producing significant alignments: (Bits) Value Ahg922300 jgi|Araly1|922300|scaffold_103581.1 623 5e-178 Ahg901398 jgi|Araly1|901398|Al_scaffold_0004_2048 370 7e-102 > Ahg922300 jgi|Araly1|922300|scaffold_103581.1 Length=388 Score = 623 bits (337), Expect = 5e-178 Identities = 372/389 (96%), Gaps = 2/389 (1%) Strand=Plus/Plus Query 97 TTGTTGTTCTTCGATT-GAAAATGGTGAAATCGACGAGTAAGGATGCTCAGGATCTATTT 155 |||||||||||||||| | |||||||||||||||| |||||||||||||||||||| ||| Sbjct 1 TTGTTGTTCTTCGATTCG-AAATGGTGAAATCGACAAGTAAGGATGCTCAGGATCTGTTT 59 Query 156 CGATCTCTTCGGTCTGCTTATTCTGCTACTCCGACTAATCTTAAGATCATCGACTTGTAT 215 ||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 60 CGATCTCTTCGTTCTGCTTATTCCGCTACTCCGACTAATCTGAAGATCATCGACTTGTAT 119 Query 216 GTCGTTTTCGCTGTCTTCACCGCTCTGATTCAGGTGGTTTATATGGCTTTGGTGGGATCA 275 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 120 GTCGTTTTCGCTGTCTTCACCGCTCTGATTCAGGTGGCTTATATGGCTTTGGTGGGATCA 179 Query 276 TTTCCATTTAACTCGTTCCTATCTGGAGTTCTCTCTTGTATCGGGACAGCAGTTCTTGCT 335 ||||| |||||||| |||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 180 TTTCCGTTTAACTCATTCCTATCTGGAGTTCTCTCTTGTATCGGGACTGCAGTTCTGGCT 239 Query 336 GTTTGCCTCCGGATTCAAGTGAACAAAGAAAACAAGGAATTCAAGGATTTAGCACCTGAG 395 |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 240 GTTTGCCTTCGGATTCAAGTGAACAAAGAAAACAAGGAATTCAAGGATTTGGCACCGGAG 299 Query 396 AGAGCTTTTGCTGATTTTGTTCTCTGCAACTTAGTCCTCCATTTGGTGATCATCAACTTC 455 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 300 AGAGCTTTTGCTGATTTTGTTCTCTGCAACTTAGTCCTCCACTTGGTGATCATCAACTTC 359 Query 456 CTCGGATAGAGGTTTCACTCTCCTGTCTA 484 |||||||||||||||||||||||| |||| Sbjct 360 CTCGGATAGAGGTTTCACTCTCCTATCTA 388 > Ahg901398 jgi|Araly1|901398|Al_scaffold_0004_2048 Length=351 Score = 370 bits (200), Expect = 7e-102 Identities = 298/344 (87%), Gaps = 12/344 (3%) Strand=Plus/Plus Query 126 TCGACGAGTAAGGATGCTCAGGATCTATTTCGA-TCTCTTCGGTCTGCTTATTCT-GCTA 183 ||||| |||||||||||||||||||| ||| | |||||||| |||||||| ||| |||| Sbjct 13 TCGACTAGTAAGGATGCTCAGGATCT-CTTCCATTCTCTTCGTTCTGCTTA-TCTCGCTA 70 Query 184 CTCCGACTAATCTTAAGATCATCGA-CTTGTATG-TCGTTTTCGCTGTCTTCACCGCTCT 241 | ||||| ||||| ||||||||||| ||| |||| | | |||||| |||||||| ||| | Sbjct 71 CACCGACGAATCTCAAGATCATCGACCTT-TATGTTTG-TTTCGCGGTCTTCACAGCTTT 128 Query 242 GATTCAGGTGGTTTATATGGCT-TTGGTGGGATCATTTCCATTT-AACTCGTTCCTATCT 299 ||| ||||| | ||| |||||| || || ||||| ||||| ||| |||||||| || || Sbjct 129 GATCCAGGTTGCTTACATGGCTCTT-GTTGGATCGTTTCC-TTTCAACTCGTTTCTCTCA 186 Query 300 GGAGTTCTCTCTTGTATCGGGACAGCAGTTCTTGCTGTTTGCCTCCGGATTCAAGTGAAC 359 ||||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||||| Sbjct 187 GGAGTTCTCTCGTGTATTGGGACAGCCGTTCTTGCTGTCTGCCTCCGGATTCAAGTGAAC 246 Query 360 AAAGAAAACAAGGAATTCAAGGATTTAGCACCTGAGAGAGCTTTTGCTGATTTTGTTCTC 419 ||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||| ||| Sbjct 247 AAAGAAAACAAGGAATTTAAGGATTTAGCACCGGAGCGAGCTTTTGCTGATTTTGTCCTC 306 Query 420 TGCAACTTAGTCCTCCATTTGGTGATCATCAACTTCCTCGGATA 463 ||||||||||||||||| | |||||||| |||||| | ||||| Sbjct 307 TGCAACTTAGTCCTCCACCTAGTGATCATAAACTTCTTAGGATA 350 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23979314793 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5