BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G32450.1 Length=2195 Score E Sequences producing significant alignments: (Bits) Value Ahg313816 jgi|Araly1|313816|fgenesh1_pm.C_scaffold_1002596 2955 0.0 > Ahg313816 jgi|Araly1|313816|fgenesh1_pm.C_scaffold_1002596 Length=1848 Score = 2955 bits (1600), Expect = 0.0 Identities = 1767/1849 (96%), Gaps = 5/1849 (0%) Strand=Plus/Plus Query 164 ATGTCTTGCCTAGAGATTTATAACAAAGACACGATgaagaagaaagaag--g-agaagaa 220 |||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||| Sbjct 1 ATGTCTTGCCTAGAGATTTATAACAAAGACACAATGAAGAAGAAAGAAGAAGAAGAAGAA 60 Query 221 gaaacaagagaTGGGACAGTGGATTACTATGGTCGTCCCTCTATTCGTTCTAACTCAGGC 280 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GAAACAAGAGATGGAACAGTGGATTACTATGGTCGTCCCTCTATTCGTTCTAACTCAGGC 120 Query 281 CAATGGGTTGCTGGCATCGTCATTCTTCTGAACCAGGGGCTGGCTACACTAGCCTTCTTT 340 |||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||| Sbjct 121 CAATGGGTTGCTGGCATCGTCATTCTCCTGAACCAGGGGTTGGCGACACTAGCCTTCTTT 180 Query 341 GGAGTTGGAGTGAACTTGGTGCTCTTCCTAACTCGCGTTTTGCAGCAGAACAACGCAGAC 400 |||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 181 GGAGTTGGAGTGAATTTGGTGCTCTTCCTAACGCGCGTTTTGCAGCAGAATAACGCAGAC 240 Query 401 GCAGCTAACAACGTTAGCAAATGGACAGGGACTGTTTATATCTTCTCATTGGTTGGAGCG 460 ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 241 GCAGCGAACAACGTTAGCAAATGGACAGGGACTGTTTATATCTTCTCATTAGTTGGAGCG 300 Query 461 TTTCTCAGCGATTCGTATTGGGGTCGTTACAAGACTTGTGCTATCTTCCAAGTCATTTTT 520 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct 301 TTTCTCAGCGATTCGTATTGGGGTCGTTACAAGACTTGTGCTATATTTCAAGTCATTTTT 360 Query 521 GTCATTGGACTTTCATCGCTATCGCTATCATCATACATGTTCTTGATTAGACCAAGAGGT 580 |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| Sbjct 361 GTCATTGGACTTTCATCGCTATCGCTATCATCGTACATGTTCTTGATTAGACCACGAGGT 420 Query 581 TGTGGGGACGAAGTCACGCCTTGTGGTTCACATTCCATGATGGAGATCACAATGTTCTAC 640 || ||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct 421 TGCGGGGATGAAGTCACTCCTTGTGGTTCGCATTCCATGATGGAGATCACAATGTTCTAC 480 Query 641 TTCTCGATCTACTTGATCGCATTGGGATATGGCGGTTACCAACCAAACATTGCAACGCTT 700 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 TTTTCGATCTACTTGATCGCATTGGGATATGGCGGTTACCAACCAAACATTGCAACGCTT 540 Query 701 GGAGCGGATCAGTTCGATGAGGAGCATCCTAAAGAAGGGTACTCGAAGATTGCGTTTTTC 760 ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 541 GGAGCGGATCAATTCGATGAGGAGCATCCTAAAGAAGGGTACTCAAAGATTGCGTTTTTC 600 Query 761 AGCTACTTTTACCTTGCTTTAAACCTCGGATCGCTCTTTTCGAACACCATCTTGGGGTAT 820 |||||||| ||||||||||| ||||||||||| |||||||| |||||||||||||||||| Sbjct 601 AGCTACTTCTACCTTGCTTTGAACCTCGGATCACTCTTTTCAAACACCATCTTGGGGTAT 660 Query 821 TTTGAGGATGAGGGAATGTGGGCACTCGGGTTTTGGGCATCCACTGGCTCTGCTATCATT 880 |||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||| Sbjct 661 TTTGAGGATGAGGGAATGTGGGCACTTGGGTTTTGGGCGTCCACTGGTTCTGCTATCATT 720 Query 881 GGGTTGATTCTTTTCCTTGTTGGAACACCGAGATACCGATATTTCAAGCCCACGGGGAAT 940 || |||||||||||||| |||||||||||||||||||||||||| | |||||| |||||| Sbjct 721 GGTTTGATTCTTTTCCTCGTTGGAACACCGAGATACCGATATTTTATGCCCACCGGGAAT 780 Query 941 CCTCTTTCGAGGTTTTGCCAAGTTTTGGTCGCTGCAACGAAGAAATCATCGGTGGAGGCA 1000 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 CCTCTTTCGAGGTTTTGCCAAGTTTTGGTCGCTGCAACGAAGAAATCATCGGTGGAGGCG 840 Query 1001 CCATTAAGAGGGAGAGAGGAGATGTATGACGGAGACAGCGAAGGGAAAAATGCTTCAGTT 1060 ||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||| Sbjct 841 CCATTAAGAGGGAGAGAGGAGATGTATGATGGAGACAGCCAAGGGAAAAATGTTTCAGAA 900 Query 1061 AACACAGGGAGAAGGATAGTGCATACCGATGAATTCAAGTTCTTGGACAAAGCAGCGTAC 1120 || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 901 AATACAGGGAGAAGGATAGTGCATACCGATGAATTCAAATTCTTGGACAAAGCAGCGTAC 960 Query 1121 ATCACAGCTAGAGATCTAGATGACAAGAAACAAGACTCAGTGAACCCATGGAGGCTCTGT 1180 |||||||| |||||||| |||||||||||||||||| |||| || || |||||||||||| Sbjct 961 ATCACAGCGAGAGATCTTGATGACAAGAAACAAGACGCAGTTAATCCGTGGAGGCTCTGT 1020 Query 1181 CCAGTGACACAAGTCGAGGAAGTCAAGTGTATTCTTAGACTGATGCCAATTTGGCTCTGC 1240 || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1021 CCGGTGACACAAGTCGAGGAAGTCAAGTGCATTCTTAGACTGATGCCAATTTGGCTCTGC 1080 Query 1241 ACTATAATCTACTCAGTCGTCTTCACTCAAATGGCCTCTCTCTTTGTGGAGCAAGGCGCT 1300 |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 1081 ACTATAATCTACTCAGTCGTCTTCACCCAAATGGCCTCTCTATTTGTGGAGCAAGGCGCT 1140 Query 1301 GCAATGAATACCTCTGTCTCAGATTTCAAAATCCCCCCGGCAAGTATGTCCAGCTTCGAC 1360 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 1141 GCAATGAATACCTCTGTCTCGGATTTCAAAATCCCCCCTGCAAGTATGTCCAGCTTCGAC 1200 Query 1361 ATCCTTAGCGTCGCTTTGTTCATATTCCTGTACCGCAGAGTTCTCGAGCCAGTAGCCAAC 1420 |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1201 ATCCTTAGTGTCGCTTTGTTCATATTCCTATACCGCAGAGTTCTCGAGCCAGTAGCCAAC 1260 Query 1421 AGATTCAAAAAGAATGGATCAAAAGGAATCACCGAGCTTCACAGGATGGGAATCGGACTT 1480 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1261 AGATTCAAGAAGAACGGATCAAAAGGAATCACCGAGCTTCACAGGATGGGAATCGGACTT 1320 Query 1481 GTGATTGCTGTCATAGCTATGATTGCAGCCGGGATTGTGGAATGCTATAGGCTTAAGTAT 1540 || ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 1321 GTTATTGCTGTCATAGCTATGATTGCAGCCGGAATTGTGGAATGCTATAGGCTAAAGTAC 1380 Query 1541 GCAGACAAGAGTTGTACTCACTGTGATGGCTCAAGCTCCTTAAGCATCTTCTGGCAGGCT 1600 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1381 GCAGACAAAAGTTGCACTCACTGTGATGGCTCAAGCTCCTTAAGCATCTTCTGGCAGGCT 1440 Query 1601 CCACAATACTCACTCATCGGGGCATCAGAAGTGTTCATGTACGTGGGTCAGCTTGAGTTC 1660 |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 1441 CCACAATACTCACTAATTGGGGCATCAGAAGTGTTCATGTACGTGGGTCAGCTTGAGTTC 1500 Query 1661 TTCAACGCGCAAACACCAGACGGACTAAAGAGCTTCGGGAGCGCTCTGTGTATGATGTCA 1720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1501 TTCAACGCGCAAACACCAGACGGACTAAAGAGCTTCGGGAGCGCTCTGTGTATGATGTCA 1560 Query 1721 ATGTCAATGGGGAACTTTGTTAGTAGCTTGTTGGTAACAATGGTGGTGAAGATCTCAACA 1780 ||||||||||| |||||||| |||||||||||||| |||||||||||||||||||| ||| Sbjct 1561 ATGTCAATGGGAAACTTTGTGAGTAGCTTGTTGGTGACAATGGTGGTGAAGATCTCTACA 1620 Query 1781 GAGGATCACATGCCTGGTTGGATTCCAAGGAATCTCAACAAAGGTCACTTAGACAGATTC 1840 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1621 GAGGATCACATGCCTGGTTGGATTCCAAGGAACCTCAACAAAGGTCACTTAGACAGATTC 1680 Query 1841 TATTTCCTCCTGGCTGCGTTGAC-GAGCATTGACCTGGTGGTATACATTGCATGTGCAAA 1899 ||||||||| ||||||||||||| | ||||||||||||||||||| ||||| |||||||| Sbjct 1681 TATTTCCTCTTGGCTGCGTTGACCG-GCATTGACCTGGTGGTATATATTGCCTGTGCAAA 1739 Query 1900 ATGGTACAAACCTATACAACTAGAAGGAAAAGATGAGATGCAAGACATGAGTGATGATGA 1959 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1740 GTGGTACAAACCTATAAAACTAGAAGGAAAAGATGAGATGCAAGACATGAGTGATGATGA 1799 Query 1960 CTATGACACCGAGAGTGAAGAGGAACGAGAGAAGGATTCTAAAGTCTAA 2008 | ||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1800 CGATGACACCGAGAGCGAAGAGGAACGAGAGAAGGATTCTAAAGTCTAA 1848 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 82617741405 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5