BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G32470.1 Length=791 Score E Sequences producing significant alignments: (Bits) Value Ahg922337 jgi|Araly1|922337|scaffold_103618.1 894 0.0 Ahg482500 jgi|Araly1|482500|fgenesh2_kg.4__1560__AT2G35370.1 599 1e-170 Ahg922338 jgi|Araly1|922338|scaffold_103619.1 78.7 6e-14 > Ahg922337 jgi|Araly1|922337|scaffold_103618.1 Length=549 Score = 894 bits (484), Expect = 0.0 Identities = 526/546 (96%), Gaps = 4/546 (1%) Strand=Plus/Plus Query 93 aaacaaacaaaccagaa-aaaGGAATGGCACTGAGAATGTGGGCTTCCTCTACAGCAAAT 151 ||| ||| ||||||||| ||| ||||||| ||||||||||||||||||||||||||||| Sbjct 6 AAAAAAAGAAACCAGAAGAAA-AAATGGCATTGAGAATGTGGGCTTCCTCTACAGCAAAT 64 Query 152 GCTCTCAAGCTCTCTTCTTCTGCCTCCAAATCTCATCTCTTGCCAGCTTTCTCCATCTCC 211 |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| Sbjct 65 GCTCTCAAGCTCTCTTCTTCTGTCTCCAAATCTCATCTCTTGCCAGCTTTCTCTATCTCC 124 Query 212 AGATGCTTCTCCTCAGTGTTGGAAGGACTTAAGTATGCAAATTCACATGAGTGGGTGAAA 271 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 125 AGATGCTTCTCCTCAGTGTTGGAAGGACTTAAGTATGCAAATTCACATGAGTGGGTGAAA 184 Query 272 CATGAAGGCTCAGTTGCTACAATTGGTATCACTGACCATGCGCAGGACCATTTAGGAGAA 331 ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 185 CATGATGGCTCAGTTGCTACAATTGGTATCACTGACCATGCCCAGGACCATTTAGGAGAA 244 Query 332 GTTGTGTTTGTGGAGCTGCCTGAAGCAAACAGTTCAGTGAGCAAAGAAAAAAGCTTTGGA 391 ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 245 GTTGTATTTGTGGAGCTACCAGAAGCAAACAGTTCAGTGAGCAAAGAAAAAAGCTTTGGA 304 Query 392 GCTGTTGAGAGTGTTAAGGCCACAAGTGAGATTCTATCTCCAATCTCTGGTGAAGTCATT 451 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 305 GCTGTTGAGAGTGTTAAGGCCACAAGTGAGATTCTATCTCCAATCTCCGGTGAAGTCATT 364 Query 452 GAGGTTAACACAAAGCTCACCGAGTCACCTGGTTTGATCAACTCAAGCCCTTATGAAGAT 511 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 365 GAGGTTAACACGAAGCTCACCGAGTCACCTGGTTTGATCAACTCAAGCCCTTATGAAGAT 424 Query 512 GGTTGGATGATAAAGGTGAAACCGAGCAGCCCCGCGGAGTTGGAAGCTCT-GATGGGTCC 570 ||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||| Sbjct 425 GGTTGGATGATAAAGGTGAAACCAAGCAGCCCCGCGGAGTTGGAAGC-CTTGATGGGTCC 483 Query 571 AAAGGAATACACCAAGTTCTGCGAAGAAGAAGACGCTGCTCACTAGGGTTTCTTCGCCTT 630 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 484 AAAGGAATACACCAAGTTCTGCGAAGATGAAGACGCTGCTCACTAGGGTTTCTTCGCCTT 543 Query 631 TTATCT 636 | |||| Sbjct 544 TCATCT 549 > Ahg482500 jgi|Araly1|482500|fgenesh2_kg.4__1560__AT2G35370.1 Length=784 Score = 599 bits (324), Expect = 1e-170 Identities = 448/507 (88%), Gaps = 11/507 (2%) Strand=Plus/Plus Query 115 AATGGCACTGAGAATGTGGGCTTCCTCTACAGCAAATGCTCTCAAGCTCTCTTCTTCTGC 174 |||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||| Sbjct 127 AATGGCACTGAGAATGTGGGCTTCTTCTACAGCAAACGCTCTCAAGCTTTCTTCTTCTGT 186 Query 175 CTCCAAATCTCATCTCTTGCCAGCTTTCTCCATCTCCAGATGCTTCTCCTCAGTGTTGGA 234 ||||| ||||||||| | | ||||||||||||| |||||||||||| ||| |||||| Sbjct 187 TTCCAAGTCTCATCTC-T--CTCCTTTCTCCATCTCTAGATGCTTCTCCACAGGGTTGGA 243 Query 235 AGGACTT-AAGTATGCAAATTCACATGAGTGGGTGAAACATGAAGGCTCAGTTGCTACAA 293 ||| || ||||||||||||||||| |||||||| |||||||||||||| ||||| || | Sbjct 244 GGGA-TTGAAGTATGCAAATTCACACGAGTGGGTTAAACATGAAGGCTCTGTTGCCACCA 302 Query 294 TTGGTATCACTGACCATGCGCAGGACCATTTAGGAGAAGTTGTGTTTGTGGAGCTGCCTG 353 |||| ||||||| |||||| |||||||||||||| ||||| ||||||||||| ||||| | Sbjct 303 TTGGGATCACTGCCCATGCTCAGGACCATTTAGGTGAAGTGGTGTTTGTGGAACTGCCAG 362 Query 354 AAGCAAACAGTTCAGTGAGCAAAGAAAAAAGCTTTGGAGCTGTTGAGAGTGTTAAGGCCA 413 | | ||| | |||||||| |||||| |||||||||||||| || |||||||| ||||||| Sbjct 363 AGGAAAATACTTCAGTGACCAAAGAGAAAAGCTTTGGAGCAGTGGAGAGTGTGAAGGCCA 422 Query 414 CAAGTGAGATTC-TATCTCCAATCTCTGGTGAAGTCATTGAGGTTAACACA-AAGCTCAC 471 ||||||||| || |||| || ||||| |||||| ||||||||||||||| | |||||||| Sbjct 423 CAAGTGAGA-TCTTATCACCGATCTCAGGTGAAATCATTGAGGTTAACA-AGAAGCTCAC 480 Query 472 CGAGTCACCTGGTTTGATCAACTCAAGCCCTTATGAAGATGGTTGGATGAT-AAAGGTGA 530 || |||||||| ||||| ||||||||||||||||||||||| |||||||| ||| |||| Sbjct 481 AGAATCACCTGGCTTGATTAACTCAAGCCCTTATGAAGATGGCTGGATGATCAAA-GTGA 539 Query 531 AACCGAGCAGCCCCGCGGAGTTGGAAGCTCTGATGGGTCCAAAGGAATACACCAAGTTCT 590 ||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 540 AACCGAGTAGCCCCGCGGAGTTGGAATCTTTGATGGGTCCAAAGGAATACACCAAGTTCT 599 Query 591 GCGAAGAAGAAGACGCTGCTCACTAGG 617 |||| || |||||||| |||||||||| Sbjct 600 GCGAGGAGGAAGACGCCGCTCACTAGG 626 > Ahg922338 jgi|Araly1|922338|scaffold_103619.1 Length=985 Score = 78.7 bits (42), Expect = 6e-14 Identities = 45/46 (98%), Gaps = 1/46 (2%) Strand=Plus/Minus Query 1 ATCTAAAGATAGAACACAAACGTCAATAAAAGCAA-TTAAGATCTC 45 ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 46 ATCTAAAGATAGAACACAAACGTCAATAAAAGCAAATTAAGATCTC 1 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29202154422 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5