BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32500.1
Length=1808
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473442 jgi|Araly1|473442|fgenesh2_kg.1__3396__AT1G32500.1 2708 0.0
> Ahg473442 jgi|Araly1|473442|fgenesh2_kg.1__3396__AT1G32500.1
Length=1779
Score = 2708 bits (1466), Expect = 0.0
Identities = 1686/1790 (94%), Gaps = 23/1790 (1%)
Strand=Plus/Plus
Query 31 aaaaaaaaCACACTCTATTTGAGAAAGTACTTGTGGGAATCGCGGCGAAAAGCAAAGAGA 90
|||||||| | |||||||| |||||||||||||| || ||||| ||||||||||||||||
Sbjct 1 AAAAAAAAAAAACTCTATTGGAGAAAGTACTTGTCGG-ATCGCTGCGAAAAGCAAAGAGA 59
Query 91 GAGAGAAG-GAAGGAATCCATTAATGGCGGCTGCCACAGTTCTCGGTCGCTTATCACTGA 149
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GAGAG-AGAGAAGGAATCCATTAATGGCGGCTGCCACAGTTCTCGGTCGCTTATCACTGA 118
Query 150 TACCAAATCTATCATCTAAACCAAAATTGAAATCTAACAGAAGAACAACTTCCACAAGTG 209
|||||| |||||| ||||||||||| |||||||| ||||||||||||||||| |||||||
Sbjct 119 TACCAACTCTATCTTCTAAACCAAAGTTGAAATCAAACAGAAGAACAACTTCTACAAGTG 178
Query 210 TTTCTGTTCGTGCACAAGCTTCGTTCTCTGACCCTTTTGTACTTCAATTAGCTGAAtctc 269
||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TTTCTATACGAGCACAAGCTTCGTTCTCTGACCCTTTTGTACTTCAATTAGCTGAATCTC 238
Query 270 tcgaagattctctctcagcttctccttc-t--tcttctttacctcttcAAAGAATCCGTG 326
||||||||||||| |||||||||||||| | |||||||||||||| |||||||||||||
Sbjct 239 TCGAAGATTCTCTGTCAGCTTCTCCTTCTTCGTCTTCTTTACCTCTCCAAAGAATCCGTG 298
Query 327 ATTCTTCCGCTGAGACTCTTTTATCTACGCCATGGCCGTCACGAAAAGACGAACCTTTCC 386
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 299 ATTCTTCCGCTGAGACTCTTTTATCTACACCATGGCCGTCACGAAAAGACGAGCCTTTCC 358
Query 387 GATTCACCGATACATCTTTAATCCGATCTTCTCAAATCGAACCAATTTCGACCCAGCAAC 446
||||||||||||||||||| ||||||| ||||||||||||||| |||||||||| ||||
Sbjct 359 GATTCACCGATACATCTTTCATCCGATTTTCTCAAATCGAACCCGTTTCGACCCATCAAC 418
Query 447 GAAATTCGGAAATTTTGGATAATCTGACGGAAACCCAGTTCACAAACGCTGTGATTATTG 506
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 419 GAAATTCTGAAATTTTGGATAATCTGACGGAAACCCAGTTCCCAAACGCTGTGATTATTG 478
Query 507 ATGGGTTCGTGTCGAATTTGACGATTGGTCCATCGGATTTGCCCGATGGGGTTTACTTCG 566
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 479 ATGGGTTCGTGTCGAGTTTGACGATTGGTCCATCGGATTTGCCTGATGGGGTTTACTTCG 538
Query 567 GGAAATAT-TCTGGTTTACCGGATGAGTTAACGAACCGGATTTCTGAGTTTATCGGGAAT 625
||| | | |||||||||||||||||||||||||||||| |||||||||| || ||||||
Sbjct 539 GGAGCT-TCTCTGGTTTACCGGATGAGTTAACGAACCGGGTTTCTGAGTTCATAGGGAAT 597
Query 626 TTTGATTCTGGTGATTTGTTTTGGTCGATTAATGGTATGGGAGCACCGGATTTGATGGTG 685
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 598 TTCGATTCTGGTGATTTGTTTTGGTCGATTAATGGTATGGGAGCACCGGATTTGGTGGTG 657
Query 686 ATTTATGTTCCTGAAGGATGTAAGGTCGAGAATCCGATTTATTTGAGGTACTTTTCTGGT 745
||||||||||||||||| |||||||| |||||||| || |||||||||||||||| ||||
Sbjct 658 ATTTATGTTCCTGAAGGGTGTAAGGTGGAGAATCCAATCTATTTGAGGTACTTTTGTGGT 717
Query 746 GAAACTGGTGACCGGGAATCGAAACGGTTACCGGTATCGAATCCTAGGGTTTTTGTGTTA 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 GAAACTGGTGACCGGGAATCGAAACGGTTACCGGTATCGAATCCTAGGGTTTTTGTGTTA 777
Query 806 GTGGAGGAAGGAGGAGAGATTGGTATCGTTGAGGAATTTGTTGGTAAAGATGAAGAAGGG 865
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 778 GTGGAGGAAGGAGGAGAGATTGGTATAGTTGAGGAATTTGTTGGTAAAGATGAAGAAGGG 837
Query 866 TTTTATTGGACGAATCCTGTTTTGGAAGTTGTTGTTCAAAAGAATGCGAAATTGAAGCAT 925
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 838 TTTTATTGGACGAATCCGGTTTTGGAAGTTGTTGTTCAAAAGAATGGGAAATTGAAGCAT 897
Query 926 TCTTATTTGCAGAAAGAATCCATGGCTTCTGCTCATATCAAGTGGACTTTTGTCCGACAG 985
|| |||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||
Sbjct 898 TCATATTTGCAGAAAGAGTCCATGGCTTCTGCTCATGTCAAGTGGACTTTCGTCCGACAG 957
Query 986 GAGGCAGAGAGTGAATATGAGCTTGTGGAAGTGAGTACTGGTGGGAAACTTGGG-AGGCA 1044
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 958 GAGGCAGAGAGTGAATATGAGCTTGTGGAAGTGAGTACTGGTGGGAAA-TTGGGGAGGCA 1016
Query 1045 CAATGTTCATGTGCAGCAGCTTGGGCCTGATACGCTCACAGAGCTAACCACGTTTCATAT 1104
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 1017 CAATGTTCATGTGCAGCAGCTTGGGCCTGATACGCTCACTGAGTTAACCACGTTTCATAT 1076
Query 1105 GTGTGTCAACGAGCAGACTCTTGATCTCCATAGCAAAATTATCTTAGACCATCCACGAGG 1164
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1077 GTGTGTCAACGAGCAGACTCTTGATCTCCATAGCAGAATTGTCTTAGACCATCCACGAGG 1136
Query 1165 CGCTTCACGACAGCTTCACAAGTGTATTGTTGCTCATTCCTCTGGTCAAGCTGTTTTCGA 1224
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 CTCTTCGCGACAGCTTCACAAGTGTATTGTTGCTCATTCCTCTGGTCAAGCTGTTTTCGA 1196
Query 1225 TGGCAATGTCCGAGTTAACAGATTCGCTCAACAGACCAACGCGGGACAACTAACACGGAG 1284
|||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct 1197 TGGCAATGTCCGAGTTAACAGATTAGCTCAACAGACCAATGCGGGGCAACTAACACGGAG 1256
Query 1285 CCTCCTTCTGAAACCCCGAGCCACCGTGAACATAAAACCGAATCTTCAGATCATTGCAGA 1344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 CCTCCTTCTGAAACCCCGAGCCACCGTGAACATAAAACCGAATCTTCAGATCATTGCAGA 1316
Query 1345 TGATGTCAAATGCTCTCATGGAGCTGCTATCAGTGATCTTGAAGAAGACCAGCTCTTCTA 1404
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1317 CGATGTCAAATGCTCGCATGGAGCTGCTATCAGTGATCTCGAAGAAGACCAGCTCTTCTA 1376
Query 1405 TTTCCAAGCTCGTGGGATCGACTTGGAGACTGCAAGAAGAGCTCTCATATCGTCTTTTGG 1464
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1377 TTTCCAAGCTCGTGGGATCGACTTGGAGACTGCAAGAAGAGCTCTCATATCTTCTTTTGG 1436
Query 1465 ATCAGAGGTTATCGAGAAGTTTCCAAATCGGGAAATCAGAGACCAAGCCAGGAATCACGT 1524
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1437 ATCAGAGGTTATCGAGAAGTTTCCAAATCGGGAAATCCGAGACCAAGCCAGGAATCATGT 1496
Query 1525 CAAAGGCTTGCTCTGATGTGTT-TCACA--GA-AACCGATCGTGATACTCACGCGCCGGT 1580
|||||||||||||||||| || || || || ||| | |||| | |||||| ||||||
Sbjct 1497 CAAAGGCTTGCTCTGATGA-TTATCCCAAAGAGAAC-G--CGTGGTGCTCACGTGCCGGT 1552
Query 1581 TTTGCGCTTACGATTCGTCAATT-ATCCTTTGTTCATTACTGCTCAAAGGCTTGGGAGGC 1639
|||| |||||||||| |||||| ||||| |||||||||||| | || |||||| |||||
Sbjct 1553 ATTGCACTTACGATTCATCAATTTATCCTCTGTTCATTACTGTTTAA-GGCTTGCGAGGC 1611
Query 1640 CCATATAGTCCAGTTTGGCCCATTTAATTAAAAACTAAGAAGAACAACAAACAGTTGGCT 1699
|||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 1612 CCATCTAGTCCAGTTTGGCCCATATAATTAAAAT-TAAGAAGAACAACAAACAGTTGGCT 1670
Query 1700 TCTATATGAGTTAAATAGCGTGCAGTTTCTCTTT-AAATTTGGGAAAAGGTTTCTATTCG 1758
||||||||||||||||||||||||| | || ||| ||||||||||||||||||||||| |
Sbjct 1671 TCTATATGAGTTAAATAGCGTGCAGCT-CTATTTTAAATTTGGGAAAAGGTTTCTATTGG 1729
Query 1759 CATCTGTATAAGTAAAACGACGCGATGTTTATGGATTTAAGTAAAACTTG 1808
||||||||||||||||||||| |||| ||||||||||||||| |||||||
Sbjct 1730 CATCTGTATAAGTAAAACGACACGATTTTTATGGATTTAAGTGAAACTTG 1779
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67876816590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5