BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G32550.2

Length=585
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg922345 jgi|Araly1|922345|scaffold_103626.1                        529    1e-149


> Ahg922345 jgi|Araly1|922345|scaffold_103626.1
Length=586

 Score =  529 bits (286),  Expect = 1e-149
 Identities = 355/387 (92%), Gaps = 9/387 (2%)
 Strand=Plus/Plus

Query  1    ATGGCTCTGATTTTGCCCTGTACATTTTGTACTTCGCTTCAGAAGAAGAATTTTCCGATT  60
            ||||||||||||||||| |||||||||| ||||||||||||| ||||||| |||||||||
Sbjct  21   ATGGCTCTGATTTTGCCGTGTACATTTTATACTTCGCTTCAGCAGAAGAAGTTTCCGATT  80

Query  61   AATCGGAGATATATTACGAATTTCCGTCGAGGAGCTACGACTGCGACGTGTGAGTTCCGG  120
            |||||||||||| || ||||| |||||||||||| ||||||| |||| ||||||||||| 
Sbjct  81   AATCGGAGATATTTTCCGAATCTCCGTCGAGGAGTTACGACTACGACTTGTGAGTTCCGA  140

Query  121  ATTCCTGTAGAAGTTTCCACTCCATCAGATAGAGGATCGTTGGTTGTTCCTTCGCACAAA  180
            ||||||||||||||||||||||||||||||||||||||||||  ||||||||| || || 
Sbjct  141  ATTCCTGTAGAAGTTTCCACTCCATCAGATAGAGGATCGTTGAATGTTCCTTCACATAAG  200

Query  181  GTCACTGTTCACGATCGACAACGAGGAGTGGTTCACGAATT-------C--GAGGATCAG  231
            ||||||||||||||||||||||||||||| |||||||||||       |  |||||||||
Sbjct  201  GTCACTGTTCACGATCGACAACGAGGAGTTGTTCACGAATTTGAGGTTCCAGAGGATCAG  260

Query  232  TATATATTGCATTCAGCTGAATCTCAGAACATTAGTCTTCCGTTTGCTTGCAGGCATGGT  291
            ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  261  TATATATTGCACTCAGCTGAATCTCAGAACATTACTCTTCCGTTTGCTTGCAGGCATGGT  320

Query  292  TGTTGTACTAGTTGTGCTGTACGTGTAAAATCTGGAGAGCTGAGGCAGCCTCAAGCATTG  351
            || |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct  321  TGCTGTACTAGTTGTGCCGTACGTGTAAAATCTGGAGAGCTGAGGCAGCCACAAGCATTG  380

Query  352  GGAATATCAGCAGAACTGAAGTCCCAG  378
            |||||||||||||| ||||||||||||
Sbjct  381  GGAATATCAGCAGAGCTGAAGTCCCAG  407


 Score =  267 bits (144),  Expect = 9e-71
 Identities = 154/159 (97%), Gaps = 0/159 (0%)
 Strand=Plus/Plus

Query  427  GGGTATGCACTTCTTTGTGTGGGTTTCCCCACATCTGACCTTGAAGTAGAAACACAAGAC  486
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  408  GGGTATGCACTTCTTTGTGTGGGTTTCCCTACATCTGACCTTGAAGTAGAAACACAAGAC  467

Query  487  GAGGACGAGGTCTACTGGCTACAATTTGGAAGATACTTTGCTCGTGGACCAATTGAAAGA  546
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  468  GAGGACGAGGTCTACTGGCTACAATTTGGAAGATACTTCGCTCGTGGACCAATTGAAAGA  527

Query  547  GACGATTACGCTCTTGAACTCGCCATGGGAGATGAATAG  585
            ||||||||||| |||||||||||||||||||| || |||
Sbjct  528  GACGATTACGCCCTTGAACTCGCCATGGGAGACGAGTAG  566



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21405285429


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5