BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G32550.2 Length=585 Score E Sequences producing significant alignments: (Bits) Value Ahg922345 jgi|Araly1|922345|scaffold_103626.1 529 1e-149 > Ahg922345 jgi|Araly1|922345|scaffold_103626.1 Length=586 Score = 529 bits (286), Expect = 1e-149 Identities = 355/387 (92%), Gaps = 9/387 (2%) Strand=Plus/Plus Query 1 ATGGCTCTGATTTTGCCCTGTACATTTTGTACTTCGCTTCAGAAGAAGAATTTTCCGATT 60 ||||||||||||||||| |||||||||| ||||||||||||| ||||||| ||||||||| Sbjct 21 ATGGCTCTGATTTTGCCGTGTACATTTTATACTTCGCTTCAGCAGAAGAAGTTTCCGATT 80 Query 61 AATCGGAGATATATTACGAATTTCCGTCGAGGAGCTACGACTGCGACGTGTGAGTTCCGG 120 |||||||||||| || ||||| |||||||||||| ||||||| |||| ||||||||||| Sbjct 81 AATCGGAGATATTTTCCGAATCTCCGTCGAGGAGTTACGACTACGACTTGTGAGTTCCGA 140 Query 121 ATTCCTGTAGAAGTTTCCACTCCATCAGATAGAGGATCGTTGGTTGTTCCTTCGCACAAA 180 |||||||||||||||||||||||||||||||||||||||||| ||||||||| || || Sbjct 141 ATTCCTGTAGAAGTTTCCACTCCATCAGATAGAGGATCGTTGAATGTTCCTTCACATAAG 200 Query 181 GTCACTGTTCACGATCGACAACGAGGAGTGGTTCACGAATT-------C--GAGGATCAG 231 ||||||||||||||||||||||||||||| ||||||||||| | ||||||||| Sbjct 201 GTCACTGTTCACGATCGACAACGAGGAGTTGTTCACGAATTTGAGGTTCCAGAGGATCAG 260 Query 232 TATATATTGCATTCAGCTGAATCTCAGAACATTAGTCTTCCGTTTGCTTGCAGGCATGGT 291 ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 261 TATATATTGCACTCAGCTGAATCTCAGAACATTACTCTTCCGTTTGCTTGCAGGCATGGT 320 Query 292 TGTTGTACTAGTTGTGCTGTACGTGTAAAATCTGGAGAGCTGAGGCAGCCTCAAGCATTG 351 || |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 321 TGCTGTACTAGTTGTGCCGTACGTGTAAAATCTGGAGAGCTGAGGCAGCCACAAGCATTG 380 Query 352 GGAATATCAGCAGAACTGAAGTCCCAG 378 |||||||||||||| |||||||||||| Sbjct 381 GGAATATCAGCAGAGCTGAAGTCCCAG 407 Score = 267 bits (144), Expect = 9e-71 Identities = 154/159 (97%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 427 GGGTATGCACTTCTTTGTGTGGGTTTCCCCACATCTGACCTTGAAGTAGAAACACAAGAC 486 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 408 GGGTATGCACTTCTTTGTGTGGGTTTCCCTACATCTGACCTTGAAGTAGAAACACAAGAC 467 Query 487 GAGGACGAGGTCTACTGGCTACAATTTGGAAGATACTTTGCTCGTGGACCAATTGAAAGA 546 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 468 GAGGACGAGGTCTACTGGCTACAATTTGGAAGATACTTCGCTCGTGGACCAATTGAAAGA 527 Query 547 GACGATTACGCTCTTGAACTCGCCATGGGAGATGAATAG 585 ||||||||||| |||||||||||||||||||| || ||| Sbjct 528 GACGATTACGCCCTTGAACTCGCCATGGGAGACGAGTAG 566 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21405285429 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5