BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G32640.1 Length=2179 Score E Sequences producing significant alignments: (Bits) Value Ahg922353 jgi|Araly1|922353|scaffold_103634.1 3227 0.0 Ahg915381 jgi|Araly1|915381|Al_scaffold_0008_132 154 3e-36 > Ahg922353 jgi|Araly1|922353|scaffold_103634.1 Length=2116 Score = 3227 bits (1747), Expect = 0.0 Identities = 2006/2129 (94%), Gaps = 25/2129 (1%) Strand=Plus/Plus Query 56 ACCGGTCACCGGTTTATGGAATGACTGATTACCGGCTACAACCAACGATGAATCTTTGGA 115 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1 ACCGGTCACCGGTTTATGGAATGACTGATTACCGGCTACAACCAACGATGAATCTCTGGA 60 Query 116 CCACCGACGACAACGCTTCTATGATGGAAGCTTTCATGAGCTCTTCCGATATCTCAACTT 175 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CCACCGACGATAACGCTTCTATGATGGAAGCTTTCATGAGCTCTTCCGATATCTCAACTT 120 Query 176 TATGGCCTCCGGCGTCGACGACAAC--C-ACGACGGCGACGACTG--AA-A-CAACTCCG 228 ||||||| ||||| |||| || || | || ||| | ||||| | || | ||||| || Sbjct 121 TATGGCCACCGGCAACGACCACGACGGCGACTACGACTACGAC-GACAACATCAACTACG 179 Query 229 ACGCCGGCGATGGAGATTCCGGCACAGGCGGGATTTAATCAAGAGACTCTTCAGCAACGT 288 || ||||||||||||||||||||| |||||||||||| || |||||||||||||||||| Sbjct 180 GCGACGGCGATGGAGATTCCGGCACCGGCGGGATTTAACCAGGAGACTCTTCAGCAACGT 239 Query 289 TTACAAGCTTTGATTGAAGGAACACACGAAGGTTGGACCTACGCTATATTCTGGCAACCG 348 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 240 TTACAAGCTTTGATTGAAGGGACACACGAAGGTTGGACCTACGCTATATTCTGGCAACCG 299 Query 349 TCGTATGATTTCTCCGGCGCCTCCGTGCTCGGATGGGGAGATGGTTATTACAAAGGTGAA 408 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 300 TCGTACGATTTCTCCGGCGCCTCCGTGCTCGGCTGGGGAGATGGTTATTACAAAGGTGAA 359 Query 409 GAAGATAAAGCAAACCCGAGACGGAGATCGAGTTCGCCGCCGTTTTCTACTCCGGCGGAT 468 ||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 360 GAAGATAAAGCTAAGCCGAGACAGAGATCGAGTTCGCCGCCGTTTTCTACTCCGGCGGAT 419 Query 469 CAGGAGTACAGGAAAAAAGTGTTGAGAGAGCTTAACTCGTTGATCTCCGGTGGTGTTGCT 528 ||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 420 CAGGAGTACCGGAAAAAAGTGTTGAGAGAGCTTAATTCGTTGATCTCCGGCGGTGTTGCT 479 Query 529 CCGTCGGATGACGCTGTTGATGAGGAGGTGACGGATACGGAATGGTTTTTCTTGGTTTCG 588 |||||||||||||| ||||| ||||| |||||||||||||| |||||||||||||||||| Sbjct 480 CCGTCGGATGACGCCGTTGACGAGGAAGTGACGGATACGGAGTGGTTTTTCTTGGTTTCG 539 Query 589 ATGACGCAGAGCTTCGCTTGCGGTGCGGGATTAGCTGGTAAAGCGTTTGCAACGGGTAAC 648 ||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||| Sbjct 540 ATGACGCAGAGCTTCGCTTGCGGTGCGGGATTAGCGGGTAAAGCGTTTTCGACGGGTAAC 599 Query 649 GCGGTTTGGGTTTCCGGGTCAGATCAATTATCCGGGTCGGGTTGTGAACGGGCTAAGCAA 708 |||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||| Sbjct 600 GCGGTTTGGGTTTCTGGGTCGGATCAATTATCCGGGTCGAGTTGTGAACGGGCTAAGCAA 659 Query 709 GGAGGAGTGTTTGGGATGCATACTATTGCGTGTATTCCTTCGGCGAACGGAGTTGTGGAA 768 || ||||| ||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 660 GGTGGAGTTTTTGGGATGCAGACAATTGCGTGTATTCCTTCGGCGAACGGAGTTGTGGAA 719 Query 769 GTCGGGTCAACGGAGCCGATCCGACAGAGTTCGGACCTTATTAACAAGGTTCGAATTCTT 828 |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| Sbjct 720 GTCGGGTCAACGGAGCAGATCCGACAGAGTTCGGATCTTATTAACAAGGTTCGAATTCTT 779 Query 829 TTCAATTTCGACGGCGGAGCTGGAGATTTATCGGGTCTTAATTGGAATCTTGACCCGGAT 888 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 780 TTCAATTTCGACGGCGGAGCTGGAGATTTGTCGGGTCTTAATTGGAATCTTGACCCGGAT 839 Query 889 CAAGGTGAGAACGACCCGTCTATGTGGATTAATGACCCGATTGGAACACCTGGATCTAAC 948 ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||| Sbjct 840 CAAGGTGAGAACGACCCGTCTATGTGGATTAATGACCCGATTGGAGCACCTGAATCCAAC 899 Query 949 GAACCGGGTAACGGAGCTCCAAGTTCTAGCTCCCAGCTTTTTTCAAAGTCTATTCAGTTT 1008 ||||||||||| |||||||| ||||||||||||||| |||||||||||||||| ||||| Sbjct 900 GAACCGGGTAATGGAGCTCCGAGTTCTAGCTCCCAGGTTTTTTCAAAGTCTATACAGTTC 959 Query 1009 GAGAACGGTAGCTCAAGCACAATAACCGAAAACCCGAATCTGGATCCGACTCCGAGTCCG 1068 ||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||| Sbjct 960 GAGAATGGTAGCTCAAGCACAATAACTGAAAACCCGAATCCGGATCCGACTCCGAGTCCG 1019 Query 1069 GTTCATTCTCAGACCCAGAATCCGAAATTCAATAACACTTTCTCCCGAGAACTTAATTTT 1128 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1020 GTTCATTCTCAGACCCAGAATCCGAAATTCAATAACACTTTCTCCCGAGAACTTAATTTC 1079 Query 1129 TCGACGTCAAGTTCTACTTTAGTGAAACCAAGATCCGGCGAGATATTAAACTTCGGCGAT 1188 ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| || Sbjct 1080 TCGACGTCAAGTTCTACTTTAGTGAAACCAAGATCCGGCGAGATAGTAAGCTTCGGTAAT 1139 Query 1189 GAAGGTAAACGAAGCTCCGGAAACCCGGATCCAAGTTCTTATTCGGGTCAAACACAATTC 1248 || |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1140 GATGGTAAACGGAGCTCCGGAAACCCGGATCCAAGTTCTTATTCGGGTCAACCACAATTC 1199 Query 1249 GAAAACAAAAGAAAGAGGTCGATGGTTTTGAACGAAGATAAAGTTCTATCATTCGGAGAT 1308 |||||||||||||||| ||| ||||| ||||||||||||||||| ||||||||||||||| Sbjct 1200 GAAAACAAAAGAAAGAAGTCTATGGTATTGAACGAAGATAAAGTCCTATCATTCGGAGAT 1259 Query 1309 AAAACCGCCGGAGAATCAGATCACTCCGATCTAGAAGCTTCCGTCGTGAAAGAAGTAGCA 1368 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1260 AAAACCGCCGGAGAATCAGATCACTCCGATCTAGAAGCTTCCGTCGTGAAAGAAGTACCG 1319 Query 1369 GTAGAGAAACGTCCAAAGAAACGAGGAAGAAAGCCAGCAAACGGTAGAGAAGAGCCACTA 1428 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1320 GTAGAGAAACGTCCAAAGAAACGAGGAAGAAAACCAGCAAACGGTAGAGAAGAGCCACTA 1379 Query 1429 AACCACGTCGAAGCAGAGAGACAAAGACGCGAGAAACTAAACCAAAGATTCTACGCGTTA 1488 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1380 AACCACGTCGAAGCAGAGAGACAAAGACGCGAGAAACTAAATCAAAGATTCTACGCGTTA 1439 Query 1489 CGAGCGGTTGTACCAAACGTTTCAAAAATGGATAAAGCTTCG-TTACTCGGTGACGCAAT 1547 ||||||||||||||||||||||| |||||||||||||||||| || || || |||||||| Sbjct 1440 CGAGCGGTTGTACCAAACGTTTCGAAAATGGATAAAGCTTCGCTT-CTTGGAGACGCAAT 1498 Query 1548 CGCTTACATCAACGAGCTTAAATCCAAAGTAGTCAAAACAGAGTCAGAGAAACTCCAAAT 1607 | |||||||||||||||||||||| ||||||||||||||||| ||||||||| | ||||| Sbjct 1499 CTCTTACATCAACGAGCTTAAATCGAAAGTAGTCAAAACAGAATCAGAGAAAATACAAAT 1558 Query 1608 CAAGAACCAGCTCGAGGAAGTGAAACTCGAGCTCGCCGGAAGAAAAGCGAGTGCTAGTGG 1667 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1559 CAAGAACCAGCTCGAGGAAGTGAAACTCGAGCTCGCCGGAAGAAAAGCGAGTGCTAGTGG 1618 Query 1668 AGGAGATATGTCGTCTTCGTGTTCTTCGATTAAACCGGTGGGGATGGAGATTGAAGTGAA 1727 |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1619 TGGAGATATGTCGTCGTCGTGTTCGTCGATTAAACCGGTGGGGATGGAGATTGAAGTGAA 1678 Query 1728 GATAATTGGTTGGGACGCAATGATTAGAGTTGAATCTAGTAAGAGGAATCATCCGGCGGC 1787 ||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||| Sbjct 1679 GATAATTGGTTGGGATGCGATGATTAGAGTTGAATCAAGTAAGAGGAATCATCCGGCGGC 1738 Query 1788 GAGGTTGATGTCGGCGTTGATGGATTTGGAGTTGGAAGTGAATCACGCGAGTATGTCGGT 1847 ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| Sbjct 1739 GAGGTTGATGTCGGCGTTGATGGATTTGGAGCTGGAGGTGAATCACGCGAGTATGTCGGT 1798 Query 1848 GGTTAACGATTTGATGATTCAACAAGCGACGGTGAAGATGGGTTTTAGGATCTATACGCA 1907 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1799 GGTTAACGATTTGATGATTCAACAAGCGACGGTGAAGATGGGATTTAGGATCTATACGCA 1858 Query 1908 AGAACAGCTCAGAGCAAGTTTGATTTCAAAAATCGGTTAAAAGGGTGTGTTTTGGGAAGT 1967 ||||||||| ||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 1859 GGAACAGCTCCGAGCAAGTTTGATTTCAAAAATCGGTTAAAAGGGTGTGTTTTGA-AATT 1917 Query 1968 TTAGAAAGTTATGGGGTCAAATCATAATTAATTCGTTTTAGTGGCTTCAGTAATTTTGTA 2027 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1918 TTAGAAAGTTATGGGGTCAAATCATTATTAATTCGTTTTAGTGGCTTCAGTAATTTTGTA 1977 Query 2028 GATTTTAGTTTTGTAAG-aa-aaaaaTCTTAAAATAGAGCGACAAGTTTCTTCTTTTGCT 2085 ||||| |||||||| | || ||||||||||||||||||||||||||||||| || ||| Sbjct 1978 GATTT-AGTTTTGTT-GTAAGAAAAATCTTAAAATAGAGCGACAAGTTTCTT-TT--GCT 2032 Query 2086 CTATGTTTGAGTCTG-TATCGTTTTATTGTTGTATC-TCCTCAATGAGTAAACTTGTATA 2143 ||||||| |||||| ||||||| ||||||||||| ||| |||| |||||| |||| | Sbjct 2033 CTATGTT-GAGTCTTATATCGTT--ATTGTTGTATCATCC--AATGTGTAAACGTGTACA 2087 Query 2144 TATTGATATGAGTAATATGAGTTAGTTAC 2172 ||||||||||| ||||||| ||||||||| Sbjct 2088 TATTGATATGAATAATATGTGTTAGTTAC 2116 > Ahg915381 jgi|Araly1|915381|Al_scaffold_0008_132 Length=1512 Score = 154 bits (83), Expect = 3e-36 Identities = 160/197 (81%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 1383 AAAGAAA-CGAGGAAGAAAGCCAGCAAACGGTAGAGAAGAGCCACTAAACCACGTCGAAG 1441 ||| ||| || || ||||| || || | |||||||| |||| | |||||||| |||| Sbjct 963 AAA-AAAGCGCGGGAGAAAACCGGCGCATGGTAGAGATCAGCCGTTGAACCACGTGGAAG 1021 Query 1442 CAGAGAGACA-AAGACGCGAGAAACTAAACCAAAGATTCTACGCGTTACGAGCGGTTGTA 1500 |||||||| | ||||| ||||| |||||||| ||||||||||||||||||||||||||| Sbjct 1022 CAGAGAGA-ATGAGACGTGAGAAGCTAAACCACAGATTCTACGCGTTACGAGCGGTTGTA 1080 Query 1501 CCAAACGTTTCAAAAATGGATAAAGCTTCGTTACTCGGTGACGCAAT-CGCTTACATCAA 1559 |||||||| || |||||||| ||| | ||||| |||| ||||| | || |||||| || Sbjct 1081 CCAAACGTATCGAAAATGGACAAAACGTCGTTGCTCGAAGACGCGGTTCG-TTACATAAA 1139 Query 1560 CGAGCTTAAATCCAAAG 1576 ||| || ||||| |||| Sbjct 1140 CGAACTGAAATCAAAAG 1156 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 82008297485 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5