BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32700.1
Length=1112
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913087 jgi|Araly1|913087|Al_scaffold_0001_3341 1014 0.0
> Ahg913087 jgi|Araly1|913087|Al_scaffold_0001_3341
Length=642
Score = 1014 bits (549), Expect = 0.0
Identities = 614/645 (95%), Gaps = 6/645 (1%)
Strand=Plus/Plus
Query 156 ATGGGAGCTGAAGAAGAAACCAATAAGACATATCCT-CATTGGCTAAAACCTCTGC-TAC 213
||||||||||||||||||||||||||||||| ||| || |||||||||||||| | ||
Sbjct 1 ATGGGAGCTGAAGAAGAAACCAATAAGACATGGCCTCCA-TGGCTAAAACCTCTACTTA- 58
Query 214 GAGAAAAGTTCTTTGTACAATGCAAATTACACGCAGATTCACATAAGAGTGAATGTAACA 273
||||||| ||||| ||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 59 GAGAAAAATTCTTCGTACAATGCAAATTACACGCAGATTCACACAAGAGTGAGTGTAACA 118
Query 274 TGTACTGTTTAGACTGTACCAATGGTCCTCTCTGTTCTCTCTGCT-TATCTTTCCACAAA 332
||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||
Sbjct 119 TGTACTGTTTAGACTGTACCAATGGTCCTCTCTGTTCTCTCTG-TCTCTCTTTCCACAAA 177
Query 333 GACCATCACGCCATTCAGATAAGAAGATCATCATATCACGATGTTATAAGAGTGTCGGAG 392
|| |||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||
Sbjct 178 GATCATCACGCCATTCAGATAAGGAGATCATCGTATCATGATGTTATAAGAGTGTCGGAG 237
Query 393 ATTCAGAAGTTTCTGGACATAACAGGAGTTCAGACATATGTGATCAACAGTGCTAAGGTT 452
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 238 ATTCAGAAGTTTCTTGACATAACTGGAGTTCAGACATATGTGATCAACAGTGCTAAGGTT 297
Query 453 GTGTTCTTGAACGAGAGACCTCAGCCTCGACCAGGCAAAGGTGTGATCAATACTTGTGAA 512
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 298 GTGTTCTTGAACGAGAGACCTCAGCCTCGACCAGGCAAAGGTGTGATCAATACTTGCGAA 357
Query 513 GTCTGTTATCGAAGCCTCGTTGATTCCTTCAGATTCTGCTCTCTTGGTTGCAAGATCTCT 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GTCTGTTATCGAAGCCTCGTTGATTCCTTCAGATTCTGCTCTCTTGGTTGCAAGATCTCT 417
Query 573 GGAATATCGAAGAAGAAGAGAAAGGAATGGACGAACAATCTTTCGGATTCTGATGATTCG 632
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 418 GGAATATCGAAGAAGAAAAGAAAGGAATGGACGAATAATCTTTCGGATTCTGATGATTCG 477
Query 633 TATAGCAGTACGAGTATCGGAAGGCTCAAGAAGAATGATGACATTATGAATAATAGTTTC 692
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 478 TATAGCAGTACGAGTATCGGAAGGCTCAAGAAGAATGATGACATTATGAATAATGGTTTC 537
Query 693 ACACCATCAACACCGCCTTTATCAGCCGTGAATCGTCGAATTGCAAAGCGAAGGAAGGGA 752
| ||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||
Sbjct 538 ATGCCATCAACACCGCCTCTATCAGCCGTGAATCGCCGAATTGCAAAACGAAGGAAGGGA 597
Query 753 ATCCCGCATCGTGCTCCTTTCGGAGGACTAATCATAGAATACTAA 797
|||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 598 ATCCCGCACCGTGCTCCTTTTGGAGGACTAATCATAGAATACTAA 642
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41439610779
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5