BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G32740.1

Length=1210
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg336359 jgi|Araly1|336359|fgenesh1_pg.C_scaffold_1002924          1182    0.0  


> Ahg336359 jgi|Araly1|336359|fgenesh1_pg.C_scaffold_1002924
Length=942

 Score = 1182 bits (640),  Expect = 0.0
 Identities = 863/963 (90%), Gaps = 45/963 (5%)
 Strand=Plus/Plus

Query  7    ATGGCAGTTCAAGCTCAACACCATTCCTCCAATCTCCTCTTCCTCAATAAAAGAAACGGG  66
            |||||| |||||||||||||||||||||| |||||| ||||  |||||||||||||||||
Sbjct  1    ATGGCACTTCAAGCTCAACACCATTCCTCTAATCTCATCTTATTCAATAAAAGAAACGGG  60

Query  67   AAAGAGAAAGAACATAGTAATTTTACATTACAATCACAAGCAGCTGGAGATTTTCTTGAT  126
            |||||||||| | | | |||||||||||||||||||| |  ||||||||||| |||||||
Sbjct  61   AAAGAGAAAG-A-AGA-TAATTTTACATTACAATCAC-A--AGCTGGAGATTATCTTGAT  114

Query  127  CAAACCAATATGTTATTCAACAATGGAAGTTCTAATCAGAGAAAAAGAAGAAGAGAAACG  186
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  115  CAAACCAATATGTTATTCAACAATGGAAGTTCGAATCAGAGAAAAAGAAGAAGAGAAACG  174

Query  187  AACAATCATCAGTTATTACCTA-TGCAGTCTCATCAGTTTCCTCAAGTTATAGACTTATC  245
            |||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||
Sbjct  175  AACAATCATCAGTTCTTACC-ACTGCAGTCTCATCAGTTTCCTCAAGTTATAGACTTATC  233

Query  246  TCTATTACACAACTACAATCATCCACCGTCGAATATGGTTCATACAGGACTCCGATTATT  305
            | ||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||| 
Sbjct  234  TTTATTACATAACCACAATCATCCACCGTCGAATATGGTTCATACAGGACTCCGGTTATC  293

Query  306  TTCCGGCGAAGATCAGGCACAAAAGATTAG---TC-----A---------CC---T-GTC  344
             |||||||||||||||||||||||||||||   ||     |         ||   | |||
Sbjct  294  ATCCGGCGAAGATCAGGCACAAAAGATTAGTCATCAGATAAGTTTTGTCTCCGATTCGTC  353

Query  345  TGAAGATGTTTTTGCTGCACATATCAATAGGCAAAGCGAAGAACTTGATGAGTTTCTTCA  404
            ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct  354  TGAAGATGTTTTTGCTGCACATATCAATAGGCAAAGCAAAGAACTTGATGAATTTCTTCA  413

Query  405  TGCCCAGGCGGAGGAGCTACGGCGTACATTAGCGGAGAAGAGGAAGATGCACTATAAAGC  464
            |||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||
Sbjct  414  TGCCCAGGCGGAGGAGCTACGGCGCACATTAGTGGAGAAGAGGAAGAGGCACTATAAAGC  473

Query  465  GCTTCTTGGTGCCGTGGAAGAGTCGTTGGTTCGTAAGCTGAGGGAGAAAGAGGTAGAGAT  524
            |||||||||||  ||||| ||| |||||||||||||||||||||||||||| | ||||||
Sbjct  474  GCTTCTTGGTGTTGTGGAGGAGCCGTTGGTTCGTAAGCTGAGGGAGAAAGAAGCAGAGAT  533

Query  525  AGAGAGAGCCACGCGCCGTCACAATGAGCTGGTGGCACGTGACTCGCAGCTGAGAGCGGA  584
            ||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||
Sbjct  534  AGAGAGAGCCACGCGCCGTCACAATGACCTGGTGGCGCGTGACTCACAGCTGAGAGCGGA  593

Query  585  GGTGCAAGTATGGCAAGAGAGAGCTAAAGCGCACGAAGACGCCGCCGCGTCGCTGCAGTC  644
            |  ||||| |||||||||||||||||| |||||||||| ||||||||||||||||||| |
Sbjct  594  GACGCAAGAATGGCAAGAGAGAGCTAAGGCGCACGAAGCCGCCGCCGCGTCGCTGCAGGC  653

Query  645  TCAGCTCCAGCAAGCCGTTAACCAATGCGCCGGTGGATGTGTATCGGCGCAGGATAGTAG  704
            |||||||||||| || |||||||||||||  | | | |||||  ||||||||||||||||
Sbjct  654  TCAGCTCCAGCAGGCAGTTAACCAATGCG--G-TCG-TGTGT--CGGCGCAGGATAGTAG  707

Query  705  AGCGGCGGAGGAAGGGCTATTATGCACCACAATCAGCGGAGTGGATGACGCCGAGTCGGT  764
            ||||||||||||||  | |||  ||   | |||||||||| |||| ||||||||||||||
Sbjct  708  AGCGGCGGAGGAAGA-C-ATT--GCGG-A-AATCAGCGGATTGGACGACGCCGAGTCGGT  761

Query  765  GTACGTGGATCCGGAGAG-AGTAA-AGCGGCCGAATTGCAAAGCTTGCCGGGAAAGAGAG  822
            |||||||||||||||||| | | | | ||||||| ||||||||||||||||||||| || 
Sbjct  762  GTACGTGGATCCGGAGAGGA-TGAGA-CGGCCGAGTTGCAAAGCTTGCCGGGAAAGGGAA  819

Query  823  GCAACGGTGGTTGTGTTGCCGTGTCGGCATCTGAGCATCTGCCCGGGATGTGACCGGACA  882
            || ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct  820  GCGACGGTGGTTGTGTTGCCATGTCGGCATCTGAGCATATGCCCGGGATGTGACCGGACA  879

Query  883  GCTTTAGCTTGCCCGTTGTGTCTCACGTTGCGGAATTCAAGTGTTGAAGCTATCTTTTGC  942
            |||||||| |||||||| |||||||||||||| ||||||||||||||||||||| || ||
Sbjct  880  GCTTTAGCGTGCCCGTTCTGTCTCACGTTGCGAAATTCAAGTGTTGAAGCTATCCTTGGC  939

Query  943  TAA  945
            |||
Sbjct  940  TAA  942



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 45175656645


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5