BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G32740.1 Length=1210 Score E Sequences producing significant alignments: (Bits) Value Ahg336359 jgi|Araly1|336359|fgenesh1_pg.C_scaffold_1002924 1182 0.0 > Ahg336359 jgi|Araly1|336359|fgenesh1_pg.C_scaffold_1002924 Length=942 Score = 1182 bits (640), Expect = 0.0 Identities = 863/963 (90%), Gaps = 45/963 (5%) Strand=Plus/Plus Query 7 ATGGCAGTTCAAGCTCAACACCATTCCTCCAATCTCCTCTTCCTCAATAAAAGAAACGGG 66 |||||| |||||||||||||||||||||| |||||| |||| ||||||||||||||||| Sbjct 1 ATGGCACTTCAAGCTCAACACCATTCCTCTAATCTCATCTTATTCAATAAAAGAAACGGG 60 Query 67 AAAGAGAAAGAACATAGTAATTTTACATTACAATCACAAGCAGCTGGAGATTTTCTTGAT 126 |||||||||| | | | |||||||||||||||||||| | ||||||||||| ||||||| Sbjct 61 AAAGAGAAAG-A-AGA-TAATTTTACATTACAATCAC-A--AGCTGGAGATTATCTTGAT 114 Query 127 CAAACCAATATGTTATTCAACAATGGAAGTTCTAATCAGAGAAAAAGAAGAAGAGAAACG 186 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 115 CAAACCAATATGTTATTCAACAATGGAAGTTCGAATCAGAGAAAAAGAAGAAGAGAAACG 174 Query 187 AACAATCATCAGTTATTACCTA-TGCAGTCTCATCAGTTTCCTCAAGTTATAGACTTATC 245 |||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||| Sbjct 175 AACAATCATCAGTTCTTACC-ACTGCAGTCTCATCAGTTTCCTCAAGTTATAGACTTATC 233 Query 246 TCTATTACACAACTACAATCATCCACCGTCGAATATGGTTCATACAGGACTCCGATTATT 305 | ||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||| Sbjct 234 TTTATTACATAACCACAATCATCCACCGTCGAATATGGTTCATACAGGACTCCGGTTATC 293 Query 306 TTCCGGCGAAGATCAGGCACAAAAGATTAG---TC-----A---------CC---T-GTC 344 ||||||||||||||||||||||||||||| || | || | ||| Sbjct 294 ATCCGGCGAAGATCAGGCACAAAAGATTAGTCATCAGATAAGTTTTGTCTCCGATTCGTC 353 Query 345 TGAAGATGTTTTTGCTGCACATATCAATAGGCAAAGCGAAGAACTTGATGAGTTTCTTCA 404 ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| Sbjct 354 TGAAGATGTTTTTGCTGCACATATCAATAGGCAAAGCAAAGAACTTGATGAATTTCTTCA 413 Query 405 TGCCCAGGCGGAGGAGCTACGGCGTACATTAGCGGAGAAGAGGAAGATGCACTATAAAGC 464 |||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||| Sbjct 414 TGCCCAGGCGGAGGAGCTACGGCGCACATTAGTGGAGAAGAGGAAGAGGCACTATAAAGC 473 Query 465 GCTTCTTGGTGCCGTGGAAGAGTCGTTGGTTCGTAAGCTGAGGGAGAAAGAGGTAGAGAT 524 ||||||||||| ||||| ||| |||||||||||||||||||||||||||| | |||||| Sbjct 474 GCTTCTTGGTGTTGTGGAGGAGCCGTTGGTTCGTAAGCTGAGGGAGAAAGAAGCAGAGAT 533 Query 525 AGAGAGAGCCACGCGCCGTCACAATGAGCTGGTGGCACGTGACTCGCAGCTGAGAGCGGA 584 ||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||| Sbjct 534 AGAGAGAGCCACGCGCCGTCACAATGACCTGGTGGCGCGTGACTCACAGCTGAGAGCGGA 593 Query 585 GGTGCAAGTATGGCAAGAGAGAGCTAAAGCGCACGAAGACGCCGCCGCGTCGCTGCAGTC 644 | ||||| |||||||||||||||||| |||||||||| ||||||||||||||||||| | Sbjct 594 GACGCAAGAATGGCAAGAGAGAGCTAAGGCGCACGAAGCCGCCGCCGCGTCGCTGCAGGC 653 Query 645 TCAGCTCCAGCAAGCCGTTAACCAATGCGCCGGTGGATGTGTATCGGCGCAGGATAGTAG 704 |||||||||||| || ||||||||||||| | | | ||||| |||||||||||||||| Sbjct 654 TCAGCTCCAGCAGGCAGTTAACCAATGCG--G-TCG-TGTGT--CGGCGCAGGATAGTAG 707 Query 705 AGCGGCGGAGGAAGGGCTATTATGCACCACAATCAGCGGAGTGGATGACGCCGAGTCGGT 764 |||||||||||||| | ||| || | |||||||||| |||| |||||||||||||| Sbjct 708 AGCGGCGGAGGAAGA-C-ATT--GCGG-A-AATCAGCGGATTGGACGACGCCGAGTCGGT 761 Query 765 GTACGTGGATCCGGAGAG-AGTAA-AGCGGCCGAATTGCAAAGCTTGCCGGGAAAGAGAG 822 |||||||||||||||||| | | | | ||||||| ||||||||||||||||||||| || Sbjct 762 GTACGTGGATCCGGAGAGGA-TGAGA-CGGCCGAGTTGCAAAGCTTGCCGGGAAAGGGAA 819 Query 823 GCAACGGTGGTTGTGTTGCCGTGTCGGCATCTGAGCATCTGCCCGGGATGTGACCGGACA 882 || ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 820 GCGACGGTGGTTGTGTTGCCATGTCGGCATCTGAGCATATGCCCGGGATGTGACCGGACA 879 Query 883 GCTTTAGCTTGCCCGTTGTGTCTCACGTTGCGGAATTCAAGTGTTGAAGCTATCTTTTGC 942 |||||||| |||||||| |||||||||||||| ||||||||||||||||||||| || || Sbjct 880 GCTTTAGCGTGCCCGTTCTGTCTCACGTTGCGAAATTCAAGTGTTGAAGCTATCCTTGGC 939 Query 943 TAA 945 ||| Sbjct 940 TAA 942 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45175656645 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5