BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G32810.2 Length=3207 Score E Sequences producing significant alignments: (Bits) Value Ahg473467 jgi|Araly1|473467|fgenesh2_kg.1__3421__AT1G32810.2 2333 0.0 > Ahg473467 jgi|Araly1|473467|fgenesh2_kg.1__3421__AT1G32810.2 Length=3225 Score = 2333 bits (1263), Expect = 0.0 Identities = 1391/1451 (96%), Gaps = 15/1451 (1%) Strand=Plus/Plus Query 1766 GCTTGAAGCAACAACCAGGTGATGATGATAATGATGCTAATACCAATGATGAGGACTGTG 1825 ||| ||||||||||||| || ||||||| ||||||||||||||||||||||||||||| Sbjct 1781 GCTCGAAGCAACAACCA--TG-TGATGATGCTGATGCTAATACCAATGATGAGGACTGTG 1837 Query 1826 TTTCCAGTGATGTGATCCGAGAGAGAGATGGGGATGATGAACCTTCAGAGAAAGCTCCGA 1885 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1838 TTTCCAGTGATGTGATCCGAGAGAGAGATGGGGATGATGAACCTTCAGAGAAAGCTCCGA 1897 Query 1886 AACATCCTAAATTTTCTATTACCTCTAAGAAATCGATGCAGCATAACCGTACTTCCCATT 1945 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1898 AACATCCTAAATTTTCTATTACCTCTAAGAAATCGATGCAGCATAATCGTACTTCCCATT 1957 Query 1946 CTTCAGTTTCCAAGACAAGAGAGTCTTCCTCTTCTTCAAAGACATCTTCAGCAACTCGGA 2005 |||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||| Sbjct 1958 CTTCAGTTTCCAAGACTAGAGAGTCTTCCTCTGCTTCAAAGACATCTTCAGCAGCTCGGA 2017 Query 2006 TTAATGGTGGTTCTTCTGAGGCTCCTAGTAAACATTCGCTTTCAGGAACCTTCCCGAAAA 2065 |||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 2018 TTAACGGTGGTTCTTCCGAGGCTCCTAGTAAACATTCGCTTTCAGGGACCTTCCCGAAAA 2077 Query 2066 ATGAAAAGCCTGGACAATCAATATTCCAGTCATCAACTAAGAACCCTGTGCAGTCTATAA 2125 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 2078 ATGAAAAGCCTGGACAATCAATATTCCAGTCATCAACTAAGAATCCTGTGCAGTCTATAA 2137 Query 2126 TTTCCCTTGCTCCAAATCTGAGCGATGAAGAGCTTGCGTTAAGACTGCACCATCAACTCA 2185 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2138 TTTCCCTTGCTCCAAATCTGAGCGATGAAGAGCTTGCGTTAAGACTGCACCATCAACTCA 2197 Query 2186 ATAGTTCTCCTCGAGTTCCTCGTGTCCCCCGCATGAGACAGCCTGGTAGCTTGCCCCTGT 2245 |||| ||||| |||||||||||||| || ||| ||||||||||||||||||||||||||| Sbjct 2198 ATAGCTCTCCGCGAGTTCCTCGTGTACCACGCCTGAGACAGCCTGGTAGCTTGCCCCTGT 2257 Query 2246 CTCCAACCGCCCCTAGTTTTAAGCGCACTTCTAGTTCTGGTAGCAAGGATCACACAACGT 2305 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2258 CTCCAACCGCTCCTAGTTTTAAGCGCACTTCTAGTTCTGGTAGCAAGGATCACACAACGT 2317 Query 2306 TTTCCAGAAGGAAAAACAAGGATACATCCAAAGAAGGTTACTGCAATTTACGTGATGATG 2365 ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 2318 TTTCCAGAAGGAAAAACAAGGATGCATCCAAAGAAGGTTACCGCAATTTACGTGATGATG 2377 Query 2366 ATAGATGCAGTACAAGGAGTGCCAAAAATCGTCGGTCTCCTGATAGGAGGACACAACAAG 2425 ||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||| Sbjct 2378 ATAGATGCAGTACAAGGAGTGCCAAAACGCGTCGCTCTCCTGATAGGAGAACACAACAAG 2437 Query 2426 ACAGTGGAAGCAGAGGAGGGAGTTTGTGTTCCAAAGGGGAAGAAAATGAAACCACCAAAA 2485 |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| Sbjct 2438 ACAGTGGAAGCAGAGGGGGGAGTTTGTGTTCCAAAGGGGAAGAAAATGAAACCCCCAAAA 2497 Query 2486 CCTCTTCTTATTCCTCTCGGAAAGTACTTCTCCCGCCAAACTCGACTACAAGCACAAGCA 2545 |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 2498 CCTCTTCTTACTCCTCTCGGAAAGTACTTCTCCCGCCAAACTCGGCTACAAGCACAAGCA 2557 Query 2546 GCGGACCATGTTCATCCAGCGAGTTGAATGAGCATAATAAGCCTTCTCCACACAGTTCCC 2605 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2558 GCGGACCGTGTTCATCCAGCGAGTTGAATGAGCATAATAAGCCTTCTCCACACAGTTCCC 2617 Query 2606 CTAGGAATAATGGTACTCCAGTACATCGAACTTTGCCAGGATTAATCAATGAAATCATGA 2665 ||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||| Sbjct 2618 CTAGGAATAATGGCACTGCAGTACATCGAACTTTGCCAGGCTTAATCAATGAAATCATGA 2677 Query 2666 ACAAAGGCAAGAGGATGGCATATGAGGAGCTCTGTAACGCAGTCTTGCCGCACTGGCCTC 2725 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2678 GCAAAGGCAAGAGGATGGCATATGAGGAGCTCTGTAACGCAGTCTTGCCGCACTGGCCTC 2737 Query 2726 ACTTGAGGAAACACAACGGAGAACGATATGCATATTCAAGCCATTCACAGGCTGTTCTTG 2785 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2738 ACTTGAGGAAACACAACGGAGAACGATATGCATATTCAAGCCATTCACAGGCTGTTCTTG 2797 Query 2786 ATTGCCTGAGGAATAGGCATGAGTGGGCTCGTCTGGTTGATCGTGGCCCCAAGACTAATT 2845 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 2798 ATTGCCTGAGGAATAGGCATGAGTGGGCTCGTCTGGTTGATCGTGGCCCCAAGACTAACT 2857 Query 2846 CCGGGAAAAAGAAACGGAAGCTCGATGCAGCAGAGGAGGATTCAGATGAGAACGAAAGCA 2905 | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 2858 CAGGGAAAAAGAAACGGAAGCTCGATGCAGCAGAGGAGGACTCAGATGAGAACGAAAGCA 2917 Query 2906 GTAAGGGAGGAAGGAAGCGACTGCATCAACATCACTCTCAAGGAGAAGAGTTTCCCAAAG 2965 ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| Sbjct 2918 GTAAGGGAGGAAGGAAGAGACTGCATCAACATCACTCTCAAGGAGAAGAATTTCCCAAAG 2977 Query 2966 GAAAAAGGAAAGCAAGAAAACGGAGAAGGCTTTCTATTCaaagaaaaggcattaaagtgt 3025 ||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||| Sbjct 2978 GAAAAAGGAAAGCAAGAAAACGGAGAAGGCTCTCTCTCCAAAGAAAAGGCATTAAAGTGT 3037 Query 3026 tgagaaagaagagaaac---gaagaaga--agtta-gcgaagaagacgaggaagaTGCGT 3079 ||||||| ||||||||| |||||||| || || |||||||||||||||||| ||||| Sbjct 3038 TGAGAAAAAAGAGAAACCAAGAAGAAGACGAGGTAAGCGAAGAAGACGAGGAAGGTGCGT 3097 Query 3080 TCTCGGACACAAGCGAGGAGAGCATCTTCTGCGATgaagaagaagaagaagaagaagaGG 3139 ||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||| Sbjct 3098 TCTCGGACACAAGTGAGGAGAGCATCTTCTGCGA--A-GAAGAAGAAGAAGAAGAAGAGG 3154 Query 3140 GCCACACT---GCTACTGGTACTGGACAAGTCTCTGCTAGTAGCTCTGAGGAAGCTCAAG 3196 |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3155 GCCACACTACTGCTGCTGGTACTGGACAAGTCTCTGCTAGTAGCTCTGAGGAAGCTCAAG 3214 Query 3197 CCACTTCATGA 3207 ||||||||||| Sbjct 3215 CCACTTCATGA 3225 Score = 1219 bits (660), Expect = 0.0 Identities = 876/974 (90%), Gaps = 40/974 (4%) Strand=Plus/Plus Query 1 ATGAAAGGAAGATCGTATCGGTTTTCAAGTACGGATCCTCATGAGGATTGGGTTGATGGA 60 |||| ||||||||||||||||||||| ||||||||||||||||||||||||| | ||| | Sbjct 1 ATGAGAGGAAGATCGTATCGGTTTTCGAGTACGGATCCTCATGAGGATTGGGGTAATGAA 60 Query 61 CTTTGGACTGTGGATTGTGTTTGTGGTGTGAATGACGATGATGGAACAGAGATGGTTAAA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CTTTGGACTGTGGATTGTGTTTGTGGTGTGAATGACGATGATGGAACAGAGATGGTTAAA 120 Query 121 TGTGATGATTGTGGTGTTTGGGTTCATACTCGTTGTTCTCGTTTTGTTGAAGGACAAGAG 180 |||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||| Sbjct 121 TGTGATGATTGTGGTGTTTGGGTTCATACTCGTTGTTCTCGTTTTGTTAAAGAAGAAGAG 180 Query 181 CTTTTTACTTGTCATAAGTGTAAGAGCAAGAACAATGTTAATGATAGTGAAGAGACTGAG 240 |||||||||||| ||||||||||||||||||||||| |||| ||||| || ||||||||| Sbjct 181 CTTTTTACTTGTGATAAGTGTAAGAGCAAGAACAATATTAACGATAGCGAGGAGACTGAG 240 Query 241 GTTGCTCAGTTGTTGGTTGAATTGCCTACTAAGACTTTGGGAATGGAGAATTCGTGTACT 300 |||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||| Sbjct 241 GTTGCTCAGTTGTTGGTTGAATTGCCTACTAAAACCTTGAGAATGGAGAATTCGTGTACT 300 Query 301 CGGAGTGTACCTTTC-AAGCGTCCTTTTAGGTTATGGACTGAGATCCC-AGCTGAAGAAA 358 ||| |||| || | |||||||||||||||||||||||||||||||| | | || |||| Sbjct 301 CGGGGTGTTCCGC-CGAAGCGTCCTTTTAGGTTATGGACTGAGATCCCGACC-GAGGAAA 358 Query 359 AGGTTCATGTGCAAGGAATCCCGGGTGGGGATCCGTCTCTTTTTGATGGATTGTCGTCGG 418 |||||||||| |||||||||||||||||||||||| ||||||| || || |||||||||| Sbjct 359 AGGTTCATGTTCAAGGAATCCCGGGTGGGGATCCGGCTCTTTTCGAAGGGTTGTCGTCGG 418 Query 419 TTTTCTCCCGGGAGCTGTGGAAGTGTAGTGGTTATGTGCCTAAGAAGTTTAACCTTAAGT 478 ||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||| Sbjct 419 TTTTCTCCCGGGAGCTGTGGAAGTGTACTGGTTATGTGCCGAAGAAGTTTAACTTTAAGT 478 Query 479 ATAGAGAGTTTCCTTGCTGGGATGAGCAAGAGAAGGATGA-A--GA------CGGTGCAG 529 ||||||||||||| |||||||||||||||||||||||||| | || |||||||| Sbjct 479 ATAGAGAGTTTCCATGCTGGGATGAGCAAGAGAAGGATGAGATTGAAAATGACGGTGCAG 538 Query 530 GGGTTTTGTTTTCGATGTCGAAGGAGAATGTGATTGCTGCTCCTGTTAGTACTTTGGTTG 589 ||||||||||||| ||||| ||||| |||||||||||||||||||| ||| ||||||||| Sbjct 539 GGGTTTTGTTTTCTATGTCCAAGGAAAATGTGATTGCTGCTCCTGTGAGTGCTTTGGTTG 598 Query 590 GAATGAGGAGGAGTCTTGATGGTAAAGGAGGAACCAATGACGTGAAGCTTGGTTGTG-A- 647 |||||| || || || |||||||||||| | ||||||| ||||||||||||||| | Sbjct 599 GAATGA--AG-AGCCTAGATGGTAAAGGA--A-CCAATGATTTGAAGCTTGGTTGTGCAA 652 Query 648 ----CT-C--T-G--G----T--G---AAACGGATAGAAAACATTCTCAGGGTGCTATTA 688 | | | | | | | |||| ||||||||||||||||||||||| || | Sbjct 653 AAGACGGCAATAGTTGGGACTCTGGCGAAACAGATAGAAAACATTCTCAGGGTGCCATGA 712 Query 689 AGAAGGATAAGAGGTTGCTTCGTCCTATGATGACGAATAAACGAAGAAAAGAATTGTTCG 748 ||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||| | Sbjct 713 AGAAGAATAAGAGGTTGATTCGTCCTATGATCACGAATAAACGAAGAAAAGAATTGTTTG 772 Query 749 GTGCTTCAAAAGAGCGGATGAAGAAGAAGGTTGAAGTTGTAGACAAAGAAGAAGATGATA 808 | |||||||||||||||||||||||||||| ||||| || ||| |||||||||||||||| Sbjct 773 GAGCTTCAAAAGAGCGGATGAAGAAGAAGGCTGAAGGTGCAGAAAAAGAAGAAGATGATA 832 Query 809 AGAAAGGTTTTGTCGGTAAAACAGGAAATCGACCTGCCAGTGATGCTAAACCATCAGAAT 868 ||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||| Sbjct 833 AGAAAGGGTTTGTCGGTAAAACAGGAATTCGACCTGCCAGTGATTCTAAACCATCAGAAT 892 Query 869 CTCGTAAGGACATAGAAGCAGAAGGTTTTACTAGCGACGTTGGGATCACGAAGAGTGTAA 928 ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| Sbjct 893 CTCGTAAGGACATAGAAGCAGAAGGTTTTACAAGCGACATTGGGATCACGAAGAGTGTAA 952 Query 929 AGGCCAAGAAAGCT 942 |||||||||||||| Sbjct 953 AGGCCAAGAAAGCT 966 Score = 1122 bits (607), Expect = 0.0 Identities = 730/789 (93%), Gaps = 9/789 (1%) Strand=Plus/Plus Query 942 TGCTCTGGAAACTGGCGGTGATGAATCTGGTAATACAGAAATTGGTGTTGAATGCTCCAG 1001 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 996 TGCTCTGGAAACTGGCGGTGATGAATCTGGTAATACAGAAATTGGTGTTGAATGCTCCAG 1055 Query 1002 AGAACAGAATCTTTCTGACGTTCATGCTAATGGTACTGGAAAACAGGAAGAGAAAGCTGG 1061 ||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||| Sbjct 1056 AGAACAGAATCTTTCTGACGTTCATGCCAATGGTGCGGGAAAACAGGAAGAGAAAGCTGG 1115 Query 1062 TCATCATTTCCGAATTGTGCTTAAAAGCTCTGCAACTACTGATCCTTCTGTCCTCGGAGG 1121 ||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||| Sbjct 1116 TCATCATTTTCGAATTGTGCTTAAGAGCTCTGCATCTACTGATCCTTCTGTCCTCGGAGG 1175 Query 1122 AAGAGATGTTCCACACAATGAGGCTAATAAGGAGGAGGAGAGACAAGGCACAATAGCTGA 1181 || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1176 AAAAGATGTTCCACACAATGAGGCTAATAAGGAGGAGGAGAGACAAGGCACCGTAGCTGA 1235 Query 1182 TGCTCCAGAAGATAATGCAGCTGATTCTTCTGAAAGTTCCCAGAAGCCTTCTCTTGGTTC 1241 | ||| ||||||||||||| |||||||||||||||||||| ||||||||||| || ||| Sbjct 1236 CGTTCCGGAAGATAATGCAGTTGATTCTTCTGAAAGTTCCCGGAAGCCTTCTCCTGTTTC 1295 Query 1242 CATGGTTGGTAAAACACGAGAAGGTGAAGAGAAAAATTGTGATGATGTTAGTAGGAAAAT 1301 || |||||||||||| |||||||||||||| ||||| | | | ||| ||||| | Sbjct 1296 CACGGTTGGTAAAACGCGAGAAGGTGAAGA-AAAAA---T-A-CA---CAGTGGGAAAGT 1346 Query 1302 CAGTACGAGGAAGAACAAATTCCAAAAAGAAACAGCTGATACTGGTGCCAGTGGAGCTCT 1361 |||| | || |||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1347 CAGTTCTAGAAAGAACAAATTCCAAAAAGAAACAGCTGATACTGGTGCCAGTGGAGCTGT 1406 Query 1362 AGGCCTGCAGACTCTAGACCATATGGATTCTAAAGTGTCAGGGAGCTCTGCGTCTCAGAT 1421 |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 1407 AGGCCTGCAGACTCTAGACCCTATGGATTCTAAAGTGTCAGGGAGCTCTGTATCTCAGAT 1466 Query 1422 CTCTGGAGGTTCTGAACTTAACAAAATGACACCGAGCAGTTCACTTCCTGATGATCACAA 1481 |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1467 CTCTGGAGCTTCTGAACTTAACAAAATGACACCGGGCAGTTCACTTCCTGATGATCACAA 1526 Query 1482 ACCGCAGTCTGTTGAAATGGTATCAGAGGGAATAAGTAGTGGCAATAGAGACAGAGCTAT 1541 ||||||| ||||||| |||||||||| ||||||||||||||||||||| ||| |||||| Sbjct 1527 ACCGCAGCCTGTTGATGTGGTATCAGAAGGAATAAGTAGTGGCAATAGAAACAAAGCTAT 1586 Query 1542 CGAATTAAAACGAGAACTGGTGGTTTCAGAAACTGAAAAAGATATTCAGGAAACAAAGCC 1601 |||||||||||||||||||||||||| ||| | ||||||||||||| |||||||||||| Sbjct 1587 GGAATTAAAACGAGAACTGGTGGTTTCGGAAGCAGAAAAAGATATTCTGGAAACAAAGCC 1646 Query 1602 TGGATCTGTTTTATTTCAAGAGCCATCAAAGCCTTGCAGACCTATTCCGCATACGGTTTC 1661 || ||||| |||||||||||| ||||||||||||| |||||||||||| || || ||||| Sbjct 1647 TGAATCTGGTTTATTTCAAGAACCATCAAAGCCTTTCAGACCTATTCCCCACACTGTTTC 1706 Query 1662 AGGAAATGGTAGGCCTAAGATGGTAGTATGCATTGGAAAAACATCGTCAAGTTCAGCCAC 1721 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1707 AGGAAATGGTAGGCCTAAGATGGTAGTATGCATTGGAAAAACATCGTCAAGTTCAGCCAC 1766 Query 1722 TGAAAAGTC 1730 |||||||| Sbjct 1767 AGAAAAGTC 1775 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 121165069345 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5