BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G32860.1 Length=1605 Score E Sequences producing significant alignments: (Bits) Value Ahg922379 jgi|Araly1|922379|scaffold_103660.1 1905 0.0 > Ahg922379 jgi|Araly1|922379|scaffold_103660.1 Length=1331 Score = 1905 bits (1031), Expect = 0.0 Identities = 1222/1314 (93%), Gaps = 14/1314 (1%) Strand=Plus/Plus Query 124 CAATGGAGCTTACCAGCTTCCATCGCTCTTCTCTCTTATTCCTCATCTCACTAACATTGA 183 ||||| ||||||||| |||||| |||||||||||| |||||||| ||||| | || | Sbjct 24 CAATGAAGCTTACCACCTTCCACCGCTCTTCTCTCATATTCCTCCTCTCAGTGAC---GG 80 Query 184 TCATTCTCCCGACGACAACAACTTCAATCGGAGTAAACTACGGTCAAATCGGAGACAACC 243 | || || ||| | || | |||||||||||||||||||||||||||||||||||||| Sbjct 81 TTATCCTTCCGGCAACGGTGAGTTCAATCGGAGTAAACTACGGTCAAATCGGAGACAACC 140 Query 244 TCCCCTCCCCAACCGACGTAATCCCACTAATAAAATCAATCGGAGCAACAAAAGTAAAAC 303 | || || ||| ||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 141 TACCATCACCATCCGACGTAATCCCACTAATAAAATCAATCGGTGCAACAAAAGTAAAAC 200 Query 304 TCTACGACGCAAATCCACAAATCCTCAAAGCTTTCTCCAACACCGGAATCGAATTCATCA 363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 201 TCTACGACGCAAATCCACAAATCCTCAAAGCTTTCTCCAACACCGGAATCGAATTCATCA 260 Query 364 TCGGACTCGGCAACGAATACCTCTCCAAAATGAAAGATCCTTCAAAAGC-CTTAACATGG 422 ||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||| Sbjct 261 TCGGACTCGGCAACGAATATCTCTCCAAAATGAAAGATCCTTCAAAAGCACT-AACATGG 319 Query 423 ATCAAACAAAACGTTACTCCATTTTTACCTGCGACTAACATCACATGCATAACTATCGGT 482 ||||||||||||||||||||||||||||| |||||||||||||| || || || ||||| Sbjct 320 ATCAAACAAAACGTTACTCCATTTTTACCGGCGACTAACATCACCTGTATCACAATCGGA 379 Query 483 AACGAAATCCTCGCTCTCAACGACTCTTCACTCACTACCAATCTCCTCCCAGCGATGCAA 542 ||||||||||||||||||||||||||||||||||| | |||||||||| | ||||||||| Sbjct 380 AACGAAATCCTCGCTCTCAACGACTCTTCACTCACAATCAATCTCCTCTCGGCGATGCAA 439 Query 543 GGAGTTCACTCTGCTTTAATCACCGCCGGTCTCTCCGATCAAATCTCCGTCACCACCGCG 602 ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 440 GGAGTTCACTCTGCTTTAATCACCGCCGGACTCTCCGATCAAATAACCGTCACCACCGCA 499 Query 603 CATTCTCTCTCGATCCTCAAATCCTCATTCCCACCTTCCGCCGGCGAGTTTCAACCGGAT 662 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 500 CATTCTCTCTCAATCCTCAAATCCTCATTCCCACCTTCCGCCGGCGAGTTTCAACCAGAT 559 Query 663 CTACTCGATTCGCTAACTCCGATCTTAGAATTTCACCGGAAAACTGATTCTCCGTTCTTA 722 ||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct 560 CTACTCGATTCACTAACACCGATCTTAGAATTCCACCGGAAAACTGATTCTCCGTTCTTA 619 Query 723 ATCAACGCGTATCCTTTCTTCGCTTACAAAGGAAACCCTAAAGAAGTTCCTTTAGATTTC 782 ||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||| Sbjct 620 ATCAACGCGTATCCTTTCTTCGCTTTCAAAGGAAACCCTAAAGAAGTACCTCTAGATTTC 679 Query 783 GTTCTGTTTCAACCTAATCAAGGAATCGTAGATCCGGCCACCGGTTTTCACTACGATAAC 842 |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 680 GTTCTGTTTCAACCCAATCAAGGAATCGTAGATCCGGCCACCGGATTTCACTACGACAAC 739 Query 843 ATGTTGTTCGCTCAGATCGACGCTGTCTACTCTGCTTTAGCGGCGGCGGGGTTTAAATCG 902 |||||||||||||| |||||||| || ||||||||||||||||||||||||| ||||||| Sbjct 740 ATGTTGTTCGCTCAAATCGACGCCGTGTACTCTGCTTTAGCGGCGGCGGGGTATAAATCG 799 Query 903 TTGAGAGTTGAGATATCGGAGACTGGG-TGGCCATCGAAAGGTGACGACGATGAGGTCGG 961 ||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||| || Sbjct 800 TTGAGAGTTGAGATATCGGAGAC-GGGATGGCCGTCGAAAGGTGACGACGATGAGGTTGG 858 Query 962 AGCTACGCCGGAGAATGCGAAGAGGTATAACGGAAACTTGATTAAGATGATGATGAGTGG 1021 |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| Sbjct 859 AGCTACGCCGGAGAATGCAAAGAGGTATAACGGAAACTTGATTAAGCTGATGATGAGTGG 918 Query 1022 TAAAAAGACTAAAACGCCCTTGAAGCCTAATAATGATCTAAGTATTTACGTTTTTGCCCT 1081 ||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||| Sbjct 919 TAAAAAGACTAAAACGCCCCTGAAGCCTAACAATGATCTTAGTATTTACGTTTTTGCCCT 978 Query 1082 TTTTAATGAGAATTTGAAACCTGGTCCGACGTCGGAGAGGAATTATGGCTTGTTTAAACC 1141 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 979 TTTTAATGAGAATTTGAAACCTGGTCCGACGTCGGAGAGGAATTATGGGTTGTTTAAACC 1038 Query 1142 TGATGGGACTCAGGCTTATTCACTTGGGTTTGCTTTAAACGATGTCGTGAGAGGTGCTAG 1201 |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 1039 TGATGGGACTCAGGCTTATTCACTTGGGTTTGCTTTAAACGACGTCGTGAGAGGGGCTAG 1098 Query 1202 TGGTGGTGGTACCGGTGGTGG-G--AATAGTAGTAGCGGTGGAGGAAGGGATAAGTCACC 1258 |||||| ||| |||||| || | ||||||||||| |||||||||||||| ||| | || Sbjct 1099 TGGTGGCGGTGGCGGTGGCGGTGGCAATAGTAGTAGTGGTGGAGGAAGGGAAAAGACGCC 1158 Query 1259 GGTGTTTCCGGTTTCTCCGGTGGCCCCGGATAGTGCGTCCACTGGTTATTTAGCAATTTC 1318 |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| Sbjct 1159 GGTGTTTCCGGTTTCTCCGGTGGCGCCGGATAGTGCGTCCACTGGTTATTTGGCAATTTC 1218 Query 1319 GGCTTCTCCGGTAACGGGGAAAAGAAAAGGGAAAGGGGCAATATTGTCATTGGTGGT-G- 1376 |||||||| |||||||||| |||||||||||||||||||||||||||| ||||||| | Sbjct 1219 TGCTTCTCCAGTAACGGGGAGAAGAAAAGGGAAAGGGGCAATATTGTCAATGGTGGTAGT 1278 Query 1377 -AGCATGTTACTGGCGAGACACTTACTTTGATTACACGAAACTCGAGTTTAACT 1429 |||||||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 1279 GAGCATGTTACTGGCGAGACACTTACTTTGATTACACGAAACTTGAGTT-AACT 1331 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60144496855 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5