BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G33050.1 Length=2677 Score E Sequences producing significant alignments: (Bits) Value Ahg913127 jgi|Araly1|913127|Al_scaffold_0001_3381 2542 0.0 > Ahg913127 jgi|Araly1|913127|Al_scaffold_0001_3381 Length=1821 Score = 2542 bits (1376), Expect = 0.0 Identities = 1659/1794 (92%), Gaps = 25/1794 (1%) Strand=Plus/Plus Query 280 ATGAAGCACTACAGTCACGGAATTGATGGTTTACGAAGCGGTCTTTCACCTTCCGCTAAA 339 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1 ATGAAGCACTACAGTCACGGAATTGATGGTTTACGAAGCGGTCTTTCACCATCCGCTAAA 60 Query 340 CCTTTCGCAATCGGTTCTTCTTCTTCTCCTGCCTTCTCTCTCAAATCTGAACACGAAGAT 399 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 61 CCTTTCGCAATCGGTTCTTCTTCTTCTCCTTCCTTCTCTCTCAAATCTGAACACGAAGAT 120 Query 400 TCTATTTGGGGTGATTATACTTTAGACCTTTCCTTTTTATCCTCTGATGATCAGAGAAGT 459 ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 121 TCTATCTGGGGTGATTATACTTTAGACCTTTCCTTTTTATCCTCTGATGATCAAAGAAGT 180 Query 460 GGTCTCGATGATGATGATTCGTTATCTAACTTGTCTCGCGATGTTGAGACTAATAAAGAA 519 ||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 181 GGTCTTGATGATGATGATTCGTTATCTAACTTGTCTCGCGATGTGGAGACTAACAAAGAA 240 Query 520 GGATTGGTTTTAGAGGAGAAGATAGCTAGTTCTGGAAAGGTTTTGGTAAACCCTAATCCA 579 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GGATTGGTTTTGGAGGAGAAGATAGCTAGTTCTGGAAAGGTTTTGGTAAACCCTAATCC- 299 Query 580 AG-TTTCTCGAAATTGCCTGAGGTATTGATGAAGTCCTCAGATGTTGTTGGTGATGCGAA 638 || |||||||||||||||||||||| |||| ||| ||||| |||||| ||||||||| || Sbjct 300 AGTTTTCTCGAAATTGCCTGAGGTACTGATAAAGCCCTCAAATGTTGCTGGTGATGCAAA 359 Query 639 GTTGGGTTTGTCCTGTGTCTCTGAGAAGTCTTCTACGGAGTCTGACCTAGATGAGTCTGA 698 ||||||| ||||||||||||||||||| || ||||| |||||||| |||||| ||||| Sbjct 360 GTTGGGTCTGTCCTGTGTCTCTGAGAAATCGTCTACAGAGTCTGATGAAGATGACTCTGA 419 Query 699 GGAAGATTCTCCTTGTTGGAAAGGAATGCTTTCTCATAAGAGTCTGGCTTCTGGTACTAA 758 |||||||||||||||||||| |||||||| |||||| |||||||||||||| ||| |||| Sbjct 420 GGAAGATTCTCCTTGTTGGATAGGAATGCATTCTCACAAGAGTCTGGCTTCAGGTGCTAA 479 Query 759 ATCTATGACTTCCAGGCGTTCTACTGATGATCTTAGTGGGTTTCGTAAG-TTGAATCCTT 817 | || || |||| |||||||| |||||||||||||||||||||| | || |||||||||| Sbjct 480 AGCTGTGGCTTCGAGGCGTTCGACTGATGATCTTAGTGGGTTTCAT-AGATTGAATCCTT 538 Query 818 TGGCACCTCAGTTTATACCATCTAGTTCTAAGAAGAAACTTGAAACGGATGGGGAGAAAT 877 |||||||||||||| ||||||||| ||||||||||||| |||||||||||||||| |||| Sbjct 539 TGGCACCTCAGTTTGTACCATCTAATTCTAAGAAGAAAGTTGAAACGGATGGGGAAAAAT 598 Query 878 GTGAAGAGACTAGTTCTTCGTCGTTGAAGAAGTCTTTGTCCTCGACTTTTCCGTCGTCGT 937 ||||||||| |||||||||||| |||||||||||| |||| || |||||||||||||| | Sbjct 599 GTGAAGAGAATAGTTCTTCGTCTTTGAAGAAGTCTCTGTCTTCAACTTTTCCGTCGTCAT 658 Query 938 CTGGAGAATTTGATTTAACTGACCCTCCTCTTGAAGATGGAAGAAATGATGCAGCAGAAA 997 ||||||| || ||||||||||||||||||| ||||||||||||||||||||||| | ||| Sbjct 659 CTGGAGAGTTCGATTTAACTGACCCTCCTCCTGAAGATGGAAGAAATGATGCAG-A-AAA 716 Query 998 A--GACAAGCATCTTGACCCACAATGCAGATGAAATTCTCGGTTTTGTAACTAGTGATAG 1055 | ||||||||| |||||||||||||||||| ||||| ||||||||||| |||||||||| Sbjct 717 ACTGACAAGCATATTGACCCACAATGCAGATAAAATTTTCGGTTTTGTATCTAGTGATAG 776 Query 1056 TGTTTCCAAGACTGTGAGCATGTTGGATTCTAGAAATGAATTCCAACCATCTAAAAGGTT 1115 | ||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 777 CGGTTCCAAGACCGTGAGCATTTTGGATTCTAGAAATGAATTCCAACCATCGAAAAGGTT 836 Query 1116 GGATCCTTTGGCCCCTGTCTTTGTTCCCTCTAGTGCAAAACTAGGTCCTTCTGTTCATGA 1175 ||||||||| |||||||| |||||||||||||||||||||||| |||||||||| ||||| Sbjct 837 GGATCCTTTAGCCCCTGTTTTTGTTCCCTCTAGTGCAAAACTAAGTCCTTCTGTCCATGA 896 Query 1176 GAAGCTAGGAGATTTTGTGGTAAATGCATATTCAACTTCTGCTCTTGCTTCTTCACATGT 1235 ||||| ||||| |||| || ||||||| || |||||||||||||| |||||||| ||| Sbjct 897 GAAGCAAGGAGCGTTTGAGGCAAATGCACATCCAACTTCTGCTCTTACTTCTTCAGATGA 956 Query 1236 TAAGTCGCTAGATAAGGGCAAGGTAGTGACATCTTCTGGAGAAGTTGGCCACAGTTTTAA 1295 |||||| ||| |||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 957 TAAGTCACTAAATAAGGTCAAGGTAGCGACATCTTCTGGAGAAGTTGGCCACAGTTTTAA 1016 Query 1296 GAGTCAATATGGTGGTCATGATTTTGGTTCGACATCTTCATACGGTCCTTGGATAGAATC 1355 ||||| |||||||||||||||||| |||| |||||||||||| ||||||||| ||||| Sbjct 1017 GAGTCGATATGGTGGTCATGATTTAAGTTCCACATCTTCATACAATCCTTGGATTGAATC 1076 Query 1356 TGAGGTTGGGATTACTGAGTATGCAAAACTAGGAAG---CAGCAACAAATCTCAAGGTCA 1412 | |||||||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 1077 CAACGTTGGGATTACTGAGTATGCTAAACTAGGAAGCTCCAGCAACAAATCTCAAGGTCA 1136 Query 1413 GCGGAGATTGAATCCATTGGCCCGTCAGTTCTCTCTTGCAGATGCTAAA-CAAAAGCCAT 1471 |||||||||||||||||||||| |||||||||||||||||||||||||| | |||| ||| Sbjct 1137 GCGGAGATTGAATCCATTGGCCAGTCAGTTCTCTCTTGCAGATGCTAAACCGAAAG-CAT 1195 Query 1472 ATGGCTATG-GTAAAAACCAAGCTGCAGATGATTTATCGCTAGTGGTGAATACTAGC-GG 1529 ||| ||| | | ||||||||| || |||||||||||||||||||||||||||||| | || Sbjct 1196 ATGACTACGAG-AAAAACCAAACTTCAGATGATTTATCGCTAGTGGTGAATACTA-CTGG 1253 Query 1530 TTTATACATTCCAGCTCGTTATAGGGAGGACCATAATGTAGTAGATGCAGACTTAGCACA 1589 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1254 TTTATACATTCCAGCTCGTTATAGGGAGGACCATAATGTAGTAGATGCAGACTTAGCACA 1313 Query 1590 ATCCTCAGTAAATGTGGAGCGTTTTC-TTCCCAACATGTCACATGGCGGTTCTTCACTTA 1648 |||||||||| ||||||| || |||| |||||||||||||||||||| |||||||||||| Sbjct 1314 ATCCTCAGTATATGTGGAACG-TTTCATTCCCAACATGTCACATGGCAGTTCTTCACTTA 1372 Query 1649 TAACTCCAAAGGCAGACAGTAACTTTGGGTCTACTAAGTGGATTGCGGTGGAGCCAAACC 1708 || |||||||||||||||||||| ||||||||||||||||| |||| ||||||||||| | Sbjct 1373 TATCTCCAAAGGCAGACAGTAACATTGGGTCTACTAAGTGGTTTGCAGTGGAGCCAAATC 1432 Query 1709 CTACATTTTCAGTAAAGGGTAATAGAGATTTTAAGCATCATCTTCCATTTCATGTTGTAG 1768 ||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||| Sbjct 1433 CTACATTTTCAGTAAAGGGTAGTAGAGATCTTAAGCATCCTCTTCCATTTCATGTTGTAG 1492 Query 1769 AAACTGCAGCGAGTTCATCTACAAGCGATATGAAAGCTTTACCTGGCCCATCTCCAAAAA 1828 | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1493 ATACTGCAGCGAGTTCATCTACAAGTGATATGAAAGCTTTACCTGGCCCATCTCCAAAAA 1552 Query 1829 TGGATGTGAAGAAACTACTTACAACGATGCATGGGCTGTCAGAGTTACTAACACTTGCAC 1888 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1553 TGGATGTGAAGAAACTACTTACAACGATGCATGGACTGTCAGAGTTACTAACACTTGCAC 1612 Query 1889 ATGGTTCAGAATCTTCAGATTCACCGAATGCGGAAGAGCTTGATCTCATTAACAGTACTG 1948 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1613 ATGGTTCAGAATCTTCAGATTCACCGAATGCGGAAGAGCTTGATCTCATTAACAGTACTG 1672 Query 1949 TACAGAATCTCAATTTGTACATCCAAAACAACAGTCAGGAACATGCTGGGAATCAAAGCG 2008 |||||||| |||| ||||||||||||||||||| |||| | || || |||||||||| Sbjct 1673 TACAGAATTTCAACTTGTACATCCAAAACAACACCCAGG--C-TG--GG-AATCAAAGCG 1726 Query 2009 TTGCACAATACAATTCATATGATCTAAAGCTGTTACCTAACAAGAGTAAGCTAT 2062 |||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1727 TTGCACAACGCAATTCATATGATCTAAAGCTGTTACCTAACAAGAGTAAGCTAT 1780 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 100977239495 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5