BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G33090.1 Length=1815 Score E Sequences producing significant alignments: (Bits) Value Ahg913131 jgi|Araly1|913131|Al_scaffold_0001_3385 2322 0.0 Ahg922408 jgi|Araly1|922408|scaffold_103689.1 1881 0.0 > Ahg913131 jgi|Araly1|913131|Al_scaffold_0001_3385 Length=1485 Score = 2322 bits (1257), Expect = 0.0 Identities = 1414/1490 (95%), Gaps = 10/1490 (1%) Strand=Plus/Plus Query 161 ATGGCCGGAGAAGGAGGAGAGCTCACGGCGGCTTTGTTGAAAAAGACGACTGAGAACGGA 220 |||||||||| ||||||||||||||||||||||||| |||| |||||| ||||||||| Sbjct 1 ATGGCCGGAGGAGGAGGAGAGCTCACGGCGGCTTTGCTGAATAAGACGTTTGAGAACGGC 60 Query 221 GGAGAAGAAAATGATGAGTTAGGGTTGAAGGAAAAAGTTTGGATTGAATCAAAGAAGCTA 280 ||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 61 GGAGAAGAAAAGGATGAGTTAGGGTTGAAGGAAAAGGTTTGGATAGAATCAAAGAAGCTA 120 Query 281 TGGGTTGTGGCGGCGCCATCGATCTTCACGAAGTTCTCTACGTACGGAGTTTCATTGGTA 340 |||||||||||||| |||||||||||||| || ||||||||||||||||| ||||||||| Sbjct 121 TGGGTTGTGGCGGCCCCATCGATCTTCACAAAATTCTCTACGTACGGAGTCTCATTGGTA 180 Query 341 ACTCAAGGCTTT-GTTGGCCATATTGGCCCAACCGAGTTGGCCGCTTACTCTATCACCTT 399 |||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 181 ACTCAAGG-TTTCGTTGGCCATCTTGGCCCAACCGAGTTGGCCGCTTACTCTATCACCTT 239 Query 400 CACCGTTCTCCTCCGTTTCAGTAATGGTATCTTGTTAGGTATGGCCAGTGCACTAGGAAC 459 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 CACCGTTCTCCTCCGTTTCAGTAATGGTATCTTGTTAGGTATGGCCAGTGCACTAGGAAC 299 Query 460 ATTATGTGGTCAAGCCTACGGAGCCAAACAATACCATATGCTCGGGAT-TCACCTCCAAA 518 |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 300 ATTATGTGGTCAAGCCTACGGAGCCAAACAATACCATATGCTCGGGATCT-ACCTCCAAA 358 Query 519 GGTCATGGATCGTCCTTACAGGTTGTACCATTTGCATCATGCCCATCTTCATCTTTTCAG 578 |||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||| Sbjct 359 GGTCATGGATCGTCCTCACAGGTTGTACCATTTGCATCATGCCCGTCTTCATCTTCTCAG 418 Query 579 GCCCGATCCTCTTAGCCTTAGGTCAAGAGGACCACATTGTTCGTGTGGCTCGGGTCATAG 638 |||| |||||||||| ||||||||||||||| | |||||||||||||||||||||||||| Sbjct 419 GCCCTATCCTCTTAGTCTTAGGTCAAGAGGAACGCATTGTTCGTGTGGCTCGGGTCATAG 478 Query 639 CCCTATGGCTCATAGCCATCAACTTCACCTTCGTACCCGCCTTCACTTGCCAAATATTCC 698 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 CCCTATGGCTCATAGGCATCAACTTCACCTTCGTACCCGCCTTCACTTGCCAAATATTCC 538 Query 699 TCCAATCTCAGAGCAAGAACAAGATCATCGCCTACGTGTCTGCTGTAACCTTAGGGCTCC 758 |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 539 TCCAATCTCAGAGCAAGAACAAGATCATCGCCTATGTGTCTGCTGTCACCTTAGGGCTCC 598 Query 759 ATGTTTTCTTCTCGTGGCTCCTAGTGGTTCATTTCAATTTCGGGATCACTGGTGCAATGA 818 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 599 ATGTTTTCTTCTCGTGGCTCCTAGTGGTTCATTTCAATTTCGGGATCACTGGTGCTATGA 658 Query 819 CCTCTACGCTAGTTGCGTTCTGGATGCCTAACATTGTGCAGCTCTTGTAT-GTCACATCC 877 ||||||||||||||||||||||| |||||||||||| ||||||||| | | ||||| | | Sbjct 659 CCTCTACGCTAGTTGCGTTCTGGTTGCCTAACATTGCGCAGCTCTTAT-TCGTCACGTGC 717 Query 878 GGTGGGTGTAAGGATACATGGAGAGGATTCACTATGTTGGCCTTCAAAGATTTATGGCCC 937 |||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 718 GGTGGGTGTAAGGACACATGGAAAGGATTCACTATGTTGGTCTTCAAAGATTTATGGCCC 777 Query 938 GTCTTCAAACTATCTTTGTCTTCCGGTGGAATGGTTTGCTTGGAGTTATGGTACAACTCG 997 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 778 GTCTTCAAACTATCTTTGTCTTCCGGTGGAATGGTTTGCTTGGAGTTATGGTACAACTCG 837 Query 998 ATATTAGTATTGCTCACTGGGAATTTGAAAAACGCAGAGGTGGCGATTGATGCACTAGCA 1057 |||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||| Sbjct 838 ATATTAGTATTGCTCACTGGAAATATGAAAAACGCAGAGGTGGCTCTTGATGCACTAGCA 897 Query 1058 ATCTGCATCAACGTAAATGCACTGCAGATGATGATAGCACTTGGGTTTTTGGCAGCAGTA 1117 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 898 ATCTGCATCAACGTAAATGCACTGCAGATGATGATATCACTTGGGTTTTTGGCAGCAGTA 957 Query 1118 AGTGTAAGAGTGTCCAACGAGCTCGGTAGGGGAAACCCCGAAGGCGCCAAATTTGCAACA 1177 |||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||| Sbjct 958 AGTGTAAGAGTGTCCAACGAGCTCGGTATGGGAAACCCCAAAGGAGCCAAATTTGCAACA 1017 Query 1178 ATCG-TAGCGGTTTTCACGTCACTCTCTATAGGATTAGTTCTATTCTTCGTCTTCTTGTT 1236 | | ||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| Sbjct 1018 TT-GATAGCGGTTTTCACGTCACTCTCTATAGGAATAGTTCTGTTCTTTGTCTTCTTGTT 1076 Query 1237 TCTAAGGGGAAGAATTTCGTACATTTTCACTACAAGTGAAGCTGTGGCAGCCGAAGTCGC 1296 |||||||||||||||||| ||||||||||||||||||||||| || ||||||||||| || Sbjct 1077 TCTAAGGGGAAGAATTTCCTACATTTTCACTACAAGTGAAGCCGTCGCAGCCGAAGTTGC 1136 Query 1297 TGATCTTTCTCCACTTTTAGCATTTTCCATCCTCTTGAACAGTGTTCAACCCGTTCTCTC 1356 |||||||||||||| |||||||||||||||||| |||| ||| |||||||||||||||| Sbjct 1137 CGATCTTTCTCCACTCTTAGCATTTTCCATCCTCCTGAATAGTATTCAACCCGTTCTCTC 1196 Query 1357 AGGAGTGGCAGTGGGAGCGGGATGGCAAGGATATGTGGCTTACATTAACCTTGCTTGCTA 1416 ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1197 TGGAGTGGCAGTCGGAGCGGGATGGCAAGGATATGTGGCTTACGTTAACCTTGCTTGCTA 1256 Query 1417 TTACCTTCTCGGAATTCCTGTTGGTCTTG-TCCTTGGTTACGTTGTTGGTTTGCAAGTCA 1475 ||||||||| ||||||||||||||| | | ||||||||||||| |||||||||||||||| Sbjct 1257 TTACCTTCTGGGAATTCCTGTTGGTGT-GATCCTTGGTTACGTCGTTGGTTTGCAAGTCA 1315 Query 1476 AAGGTGTATGGATAGGAATGCTTTTTGGAATATTTGTTCAGACTTGTGTGCTTACCATCA 1535 ||||||||||||| |||||||| ||||||||||| ||||||||||||||||||| ||||| Sbjct 1316 AAGGTGTATGGATTGGAATGCTCTTTGGAATATTCGTTCAGACTTGTGTGCTTAGCATCA 1375 Query 1536 TGACTCTCAGAACAGATTGGGATCAACAGGTATCTACGTCGTTGAAAAATATAAACCGGT 1595 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1376 TGACTCTCAGAACAGATTGGGATCAACAGGTATCTACGTCGTTGAGAAATATAAACCGGT 1435 Query 1596 GGGTTGTACCAGAATCTAGAGATGCAAATCAAATTTCATCAGAGGAATAA 1645 |||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1436 GGGTTGTACCAGAATCTAGAGATGCAAACCAAATTTCATCAGAGGAATAA 1485 > Ahg922408 jgi|Araly1|922408|scaffold_103689.1 Length=1525 Score = 1881 bits (1018), Expect = 0.0 Identities = 1354/1517 (89%), Gaps = 20/1517 (1%) Strand=Plus/Plus Query 155 TCCAAGATGGCCGGAGAAGGAGGAGAGCTCACGGCGGCTTTGTTGAAAAAGACGACTGAG 214 |||||||||||||||| ||||||||||||||||||||||||| |||| |||||| | | | Sbjct 15 TCCAAGATGGCCGGAGGAGGAGGAGAGCTCACGGCGGCTTTGCTGAATAAGACGGCGGCG 74 Query 215 AACGGAGGAGAAGAAAATGATGAGTTAGGGTTGAAGGAAAAAGTTTGGATTGAATCAAAG 274 ||||| ||||||||| | |||||||||||||||||| |||| |||||||||||||||||| Sbjct 75 AACGGCGGAGAAGAAGAGGATGAGTTAGGGTTGAAGCAAAAGGTTTGGATTGAATCAAAG 134 Query 275 AAGCTATGGGTTGTGGCGGCGCCATCGATCTTCACGAAGTTCTCTACGTACGGAGTTTCA 334 ||||||||||||||||||||||| |||||||||||| |||||| |||| |||||||||| Sbjct 135 AAGCTATGGGTTGTGGCGGCGCCGGCGATCTTCACGAGGTTCTCAACGTTCGGAGTTTCA 194 Query 335 TTGGTAACTCAAGGCTTTGTT-GGCCATATTGGCCCAACCGAGTTGGCCGCTTACTCTAT 393 | ||| ||| | |||| | |||||| |||| || | |||||||||||||||||||| Sbjct 195 ATAATAAGTCA-GTCTTTCATCGGCCATCTTGGTCCTATAGAGTTGGCCGCTTACTCTAT 253 Query 394 CACCTTCACCGTTCTCCTCCG-TTTCAGTAATGGTATCTTGTTAGGTATGGCCAGTGCAC 452 ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct 254 CACCTTCACCGTTCTCCTCCGGTTT-AGTAATGGTATCTTGTTAGGTATGGCCAGTGCAT 312 Query 453 TAGGAA-CATTATGTGGTCAAGCCTACGGAGCCAAACAATACCATATGCTCGGGAT-TCA 510 | |||| || |||||||||||||||||||||| |||||| | |||||||||||||| | | Sbjct 313 T-GGAAACACTATGTGGTCAAGCCTACGGAGCTAAACAAAATCATATGCTCGGGATCT-A 370 Query 511 CCTCCAAAGGTCATGGATCGTCCTTACAGGTTGTACCATTTGCATCATGCCCATCT-TCA 569 |||||||||||||||||||||||| |||||||||||||||||| ||| |||| ||| | | Sbjct 371 CCTCCAAAGGTCATGGATCGTCCTCACAGGTTGTACCATTTGCCTCACGCCCGTCTAT-A 429 Query 570 TCTTTTCAGGCCCGATCCTCTTAGCCTTAGGTCAAGAGGACCACATTGTTCGTGTGGCTC 629 ||||||||||||| |||||||||||||||||||||||||| | |||||| |||||||||| Sbjct 430 TCTTTTCAGGCCCTATCCTCTTAGCCTTAGGTCAAGAGGAACGCATTGTCCGTGTGGCTC 489 Query 630 GGGTCATAGCCCTATGGCTCATAGCCATCAACTTCACCTTCGTACCCGCCTTCACTTGCC 689 || |||||||||||||| |||||| |||||||||| |||| || || |||||||||||| Sbjct 490 GGATCATAGCCCTATGGGTCATAGGCATCAACTTCTCCTTTGTGCCTTCCTTCACTTGCC 549 Query 690 AAATATTCCTCCAATCTCAGAGCAAGAACAAGATCATCGCCTACGTGTCTGCTGTAACCT 749 |||| ||||||||| |||||||||| ||||||||||| ||||||||| ||||||| ||| Sbjct 550 AAATGTTCCTCCAAGCTCAGAGCAAAAACAAGATCATTGCCTACGTGGCTGCTGTCTCCT 609 Query 750 TAGGGCTCCATGTTTTCTTCTCGTGGCTCCT-AGTGGTTCATTTCAATTTCGGGATCACT 808 ||||| ||||||||||||| |||||||| || | |||||||||||||||||||||||||| Sbjct 610 TAGGGGTCCATGTTTTCTTGTCGTGGCTACTTA-TGGTTCATTTCAATTTCGGGATCACT 668 Query 809 GGTGCAATGACCTCTACGCTAGTTGCGTTCTGGATGCCTAACATTGTGCAGCTCTTGTAT 868 ||||| ||||||||||| ||||||||||||||| |||||||||||| ||| ||||||| | Sbjct 669 GGTGCTATGACCTCTACTCTAGTTGCGTTCTGGTTGCCTAACATTGCGCAACTCTTGTTT 728 Query 869 GTCACATCCGGTGGGTGTAAGGATACATGGAGAGGATTCACTATGTTGGCCTTCAAAGAT 928 ||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 729 GTCACGTGCGGTGGGTGTAAGGACACATGGAGAGGATTCACTATGTTGGCCTTCAAAGAT 788 Query 929 TTATGGCCCGTCTTCAAACTATCTTTGTCTTCCGGTGGAATGGTTTGCTTGGAGTTATGG 988 |||||||| ||||||||||||||| ||||||||||||||||| |||||||||| ||||| Sbjct 789 TTATGGCCTGTCTTCAAACTATCTCTGTCTTCCGGTGGAATGCTTTGCTTGGAACTATGG 848 Query 989 TACAACTCGATATTAGTATTGCTCACTGGGAATTTGAAAAACGCAGAGGTGGCGATTGAT 1048 ||||||||||| || ||| |||||||||| ||||||||||||||||| ||||| ||||| Sbjct 849 TACAACTCGATCTTGGTACTGCTCACTGGAAATTTGAAAAACGCAGAAGTGGCTCTTGAT 908 Query 1049 GCACTAGCAATCTGCATCAACGTAAATGCACTGCAGATGATGATAGCACTTGGGTTTTTG 1108 ||||||||||||||| ||||| |||||| | || |||||||||||||||||||||||||| Sbjct 909 GCACTAGCAATCTGCCTCAACATAAATGGATTGGAGATGATGATAGCACTTGGGTTTTTG 968 Query 1109 GCAGCAGTAAGTGTAAGAGTGTCCAACGAGCTCGGTAGGGGAAACCCCGAAGGCGCCAAA 1168 ||||| | |||||||||||| |||||||| |||||||| ||||||||| |||| ||||| Sbjct 969 GCAGCTGCAAGTGTAAGAGTCTCCAACGAACTCGGTAGTGGAAACCCCAAAGGAGCCAAG 1028 Query 1169 TTTGCAACAATCGT-AGCGGTTTTCACGTCACTCTCTATAGGATTAGTTCTATTCTTCGT 1227 ||||||||| | | |||||||||||| ||||| || |||||| | |||||||||||| | Sbjct 1029 TTTGCAACATT-GACAGCGGTTTTCACATCACTATCCATAGGAATGGTTCTATTCTTCAT 1087 Query 1228 CTTCTTGTTTCTAAGGGGAAGAATTTCGTACATTTTCACTACAAGTGAAGCTGTGGCAGC 1287 ||||||||||||||| |||||| |||| |||||||||||||||||||||||||| ||||| Sbjct 1088 CTTCTTGTTTCTAAGAGGAAGAGTTTCCTACATTTTCACTACAAGTGAAGCTGTCGCAGC 1147 Query 1288 CGAAGTCGCTGATCTTTCTCCACTTTTAGCATTTTCCATCCTCTTGAACAGTGTTCAACC 1347 |||||| || |||||||||||||||||||| |||||||||||| |||| ||||||||||| Sbjct 1148 CGAAGTAGCCGATCTTTCTCCACTTTTAGCTTTTTCCATCCTCATGAATAGTGTTCAACC 1207 Query 1348 CGTTCTCTCAGGAGTGGCAGTGGGAGCGGGATGGCAAGGATATGTGGCTTACATTAACCT 1407 |||||| || ||||| || || ||||||||||||||||||||||| ||||| ||||||| Sbjct 1208 CGTTCTTTCTGGAGTTGCGGTCGGAGCGGGATGGCAAGGATATGTTACTTACGTTAACCT 1267 Query 1408 TGCTTGCTATTACCTTCTCGGAATTCCTGTTGGTCTTGTCCTTGGTTACGTTGTTGGTTT 1467 ||||||||||||||| | |||||||| ||||| || ||||||||||||| |||||||| Sbjct 1268 TGCTTGCTATTACCTAGTGGGAATTCCAATTGGTATTATCCTTGGTTACGTCGTTGGTTT 1327 Query 1468 GCAAGTCAAAGGTGTATGGATAGGAATGCTTTTTGGAATATTT-GTTCAGACTTGTGTGC 1526 |||||| |||||||||||||| |||||||| |||||||| ||| |||||||||||||||| Sbjct 1328 GCAAGTGAAAGGTGTATGGATCGGAATGCTCTTTGGAAT-TTTCGTTCAGACTTGTGTGC 1386 Query 1527 TTACCATCATGACTCTCAGAACAGATTGGGATCAACAGGTATCTACGTCGTTGAAAAA-T 1585 ||||| |||||||||| ||||||||||||||||||||||| |||||||| |||| | | Sbjct 1387 TTACCGTCATGACTCTGAGAACAGATTGGGATCAACAGGTGTCTACGTCATTGAGACGCT 1446 Query 1586 ATAAACCGGTGGGTTGTACCAGAATCTAGAGATGCAAATCAAATTTCATCAGAGGAATAA 1645 ||||||||||||||||||| ||||||||||| | ||| ||||||||||||||||||||| Sbjct 1447 -TAAACCGGTGGGTTGTACCCGAATCTAGAGACGTAAACCAAATTTCATCAGAGGAATAA 1505 Query 1646 -TTCGTTTGGAT-TATG 1660 || ||| ||| |||| Sbjct 1506 ATTAATTTTGATATATG 1522 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68143448305 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5