BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G33110.1
Length=1857
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922408 jgi|Araly1|922408|scaffold_103689.1 2433 0.0
Ahg913131 jgi|Araly1|913131|Al_scaffold_0001_3385 1962 0.0
Ahg473486 jgi|Araly1|473486|fgenesh2_kg.1__3440__AT1G33080.1 1474 0.0
> Ahg922408 jgi|Araly1|922408|scaffold_103689.1
Length=1525
Score = 2433 bits (1317), Expect = 0.0
Identities = 1436/1495 (96%), Gaps = 2/1495 (0%)
Strand=Plus/Plus
Query 152 TCCAAGATGGCCGGAGGAGGAGGAGAGCTCACGGCGGCTTTGTTGAAAAAGACGGCGGAG 211
|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
Sbjct 15 TCCAAGATGGCCGGAGGAGGAGGAGAGCTCACGGCGGCTTTGCTGAATAAGACGGCGGCG 74
Query 212 AACGGCGGAGAAG-AGAAGGATGAGTTAGGGTTGAAGCAAAAGGTTTGGATTGAATCAAA 270
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 AACGGCGGAGAAGAAG-AGGATGAGTTAGGGTTGAAGCAAAAGGTTTGGATTGAATCAAA 133
Query 271 GAAGCTATGGATTGTGGCGGCGCCAGCGATCTTCACGAGATTCTCAACGTTCGGAGTTTC 330
|||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 134 GAAGCTATGGGTTGTGGCGGCGCCGGCGATCTTCACGAGGTTCTCAACGTTCGGAGTTTC 193
Query 331 AATAATAAGTCAATCTTTCATCGGCCATCTTGGTCCTATAGAGTTGGCTGCTTACTCTAT 390
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 194 AATAATAAGTCAGTCTTTCATCGGCCATCTTGGTCCTATAGAGTTGGCCGCTTACTCTAT 253
Query 391 CACCTTCACCGTTCTCCTCCGGTTTAGTAATGGTATCTTGTTAGGTATGGCCAGTGCATT 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 254 CACCTTCACCGTTCTCCTCCGGTTTAGTAATGGTATCTTGTTAGGTATGGCCAGTGCATT 313
Query 451 GGAAACACTATGTGGTCAAGCCTACGGAGCTAAACAAAATCATATGCTCGGGATCTACCT 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 314 GGAAACACTATGTGGTCAAGCCTACGGAGCTAAACAAAATCATATGCTCGGGATCTACCT 373
Query 511 CCAAAGGTCATGGATCGTCCTTACAGGTTGTACCATTTGCCTCACGCCCGTCTATATCTT 570
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 374 CCAAAGGTCATGGATCGTCCTCACAGGTTGTACCATTTGCCTCACGCCCGTCTATATCTT 433
Query 571 CTCTGGCCCTATCCTCTTAGCCTTAGGTCAAGAGGAACGCATTGTCCGTGTGGCTCGGAT 630
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 TTCAGGCCCTATCCTCTTAGCCTTAGGTCAAGAGGAACGCATTGTCCGTGTGGCTCGGAT 493
Query 631 CATAGCCCTATGGGTCATAGGCATCAACTTCTCTTTTGTGCCTTCCTTCACTTGCCAAAT 690
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 494 CATAGCCCTATGGGTCATAGGCATCAACTTCTCCTTTGTGCCTTCCTTCACTTGCCAAAT 553
Query 691 GTTCCTCCAAGCTCAGAGCAAGAACAAGATCATTGCCTACGTGGCTGCTGTCTCCTTAGG 750
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 554 GTTCCTCCAAGCTCAGAGCAAAAACAAGATCATTGCCTACGTGGCTGCTGTCTCCTTAGG 613
Query 751 GGTCCATGTCTTCTTGTCGTGGCTACTTATGGTTCATTTCAATTTTGGGATCACTGGTGC 810
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 614 GGTCCATGTTTTCTTGTCGTGGCTACTTATGGTTCATTTCAATTTCGGGATCACTGGTGC 673
Query 811 TATGACCTCTACGCTAGTTGCGTTCTGGTTGCCTAATATTGCCCAACTCTTGTTCGTCAC 870
|||||||||||| ||||||||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 674 TATGACCTCTACTCTAGTTGCGTTCTGGTTGCCTAACATTGCGCAACTCTTGTTTGTCAC 733
Query 871 GTGCGGTGGGTGTAAGGACACATGGAGAGGATTCTCTATGATGGCCTTCAAAGATTTATG 930
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 734 GTGCGGTGGGTGTAAGGACACATGGAGAGGATTCACTATGTTGGCCTTCAAAGATTTATG 793
Query 931 GCCCGTCTTCAAACTTTCTATGTCTTCCGGTGGAATGCTTTGCTTGGAACTATGGTACAA 990
||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 794 GCCTGTCTTCAAACTATCTCTGTCTTCCGGTGGAATGCTTTGCTTGGAACTATGGTACAA 853
Query 991 CTCAATCTTGGTACTGCTCACTGGAAATTTGAAAAACGCAGAAGTGGCTCTTGATGCACT 1050
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 854 CTCGATCTTGGTACTGCTCACTGGAAATTTGAAAAACGCAGAAGTGGCTCTTGATGCACT 913
Query 1051 AGCAATCTGCCTCAACATAAATGGACTGGAGATGATGATAGCACTTGGGTTTTTGGCAGC 1110
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 914 AGCAATCTGCCTCAACATAAATGGATTGGAGATGATGATAGCACTTGGGTTTTTGGCAGC 973
Query 1111 TGCAAGCGTAAGAGTGTCCAACGAGCTCGGTAGTGGAAACCCCAAAGGAGCCAAGTTTGC 1170
|||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 974 TGCAAGTGTAAGAGTCTCCAACGAACTCGGTAGTGGAAACCCCAAAGGAGCCAAGTTTGC 1033
Query 1171 AACACTAACCGCGGTTTTCACATCACTCTCTTTAGGAATAGTTCTATTCTTCGTCTTCTT 1230
|||| | || ||||||||||||||||| || ||||||| |||||||||||| |||||||
Sbjct 1034 AACATTGACAGCGGTTTTCACATCACTATCCATAGGAATGGTTCTATTCTTCATCTTCTT 1093
Query 1231 GTTTCTGAGAGGAAGAGTTTCCTACATTTTCACTACAAGTGAAGCTGTCGCAGCCGAAGT 1290
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1094 GTTTCTAAGAGGAAGAGTTTCCTACATTTTCACTACAAGTGAAGCTGTCGCAGCCGAAGT 1153
Query 1291 TGCCGATCTTTCTCCGCTTTTAGCCTTTTCCATCCTCATGAATAGTGTTCAACCCGTTCT 1350
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1154 AGCCGATCTTTCTCCACTTTTAGCTTTTTCCATCCTCATGAATAGTGTTCAACCCGTTCT 1213
Query 1351 CTCTGGAGTTGCCGTCGGAGCTGGATGGCAAGGATATGTTACTTACGTTAACCTTGCTTG 1410
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1214 TTCTGGAGTTGCGGTCGGAGCGGGATGGCAAGGATATGTTACTTACGTTAACCTTGCTTG 1273
Query 1411 CTATTACCTTGTCGGAATTCCTATTGGTATTATCCTTGGTTATGTCGTTGGTTTGCAAGT 1470
||||||||| || |||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1274 CTATTACCTAGTGGGAATTCCAATTGGTATTATCCTTGGTTACGTCGTTGGTTTGCAAGT 1333
Query 1471 GAAAGGCGTATGGATCGGAATGCTCTTTGGAATATTCGTTCAGACTTGTGTGCTTACCGT 1530
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1334 GAAAGGTGTATGGATCGGAATGCTCTTTGGAATTTTCGTTCAGACTTGTGTGCTTACCGT 1393
Query 1531 CATGACTCTGAGAACAGATTGGGATCAACAGGTGTCAACGTCGTTGAGACGTTTAAATCG 1590
|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||| ||
Sbjct 1394 CATGACTCTGAGAACAGATTGGGATCAACAGGTGTCTACGTCATTGAGACGCTTAAACCG 1453
Query 1591 GTGGGTTGTACCAGAATCTAGAGACGTAAACCAAGTATCATCAGAGGAATAAATT 1645
|||||||||||| ||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1454 GTGGGTTGTACCCGAATCTAGAGACGTAAACCAAATTTCATCAGAGGAATAAATT 1508
> Ahg913131 jgi|Araly1|913131|Al_scaffold_0001_3385
Length=1485
Score = 1962 bits (1062), Expect = 0.0
Identities = 1349/1490 (91%), Gaps = 10/1490 (1%)
Strand=Plus/Plus
Query 158 ATGGCCGGAGGAGGAGGAGAGCTCACGGCGGCTTTGTTGAAAAAGACGGCGGAGAACGGC 217
|||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||
Sbjct 1 ATGGCCGGAGGAGGAGGAGAGCTCACGGCGGCTTTGCTGAATAAGACGTTTGAGAACGGC 60
Query 218 GGAGAAGAGAAGGATGAGTTAGGGTTGAAGCAAAAGGTTTGGATTGAATCAAAGAAGCTA 277
|||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 61 GGAGAAGAAAAGGATGAGTTAGGGTTGAAGGAAAAGGTTTGGATAGAATCAAAGAAGCTA 120
Query 278 TGGATTGTGGCGGCGCCAGCGATCTTCACGAGATTCTCAACGTTCGGAGTTTCAATAATA 337
||| |||||||||| ||| |||||||||| | |||||| |||| |||||| ||| | ||
Sbjct 121 TGGGTTGTGGCGGCCCCATCGATCTTCACAAAATTCTCTACGTACGGAGTCTCATTGGTA 180
Query 338 AGTCAATCTTTCATCGGCCATCTTGGTCCTATAGAGTTGGCTGCTTACTCTATCACCTTC 397
| |||| |||| | ||||||||||| || | |||||||| ||||||||||||||||||
Sbjct 181 ACTCAAGGTTTCGTTGGCCATCTTGGCCCAACCGAGTTGGCCGCTTACTCTATCACCTTC 240
Query 398 ACCGTTCTCCTCCGGTTT-AGTAATGGTATCTTGTTAGGTATGGCCAGTGCA-TTGGAAA 455
||||||||||||| |||| ||||||||||||||||||||||||||||||||| | || ||
Sbjct 241 ACCGTTCTCCTCC-GTTTCAGTAATGGTATCTTGTTAGGTATGGCCAGTGCACTAGG-AA 298
Query 456 CACTATGTGGTCAAGCCTACGGAGCTAAACAAAATCATATGCTCGGGATCTACCTCCAAA 515
|| |||||||||||||||||||||| |||||| | |||||||||||||||||||||||||
Sbjct 299 CATTATGTGGTCAAGCCTACGGAGCCAAACAATACCATATGCTCGGGATCTACCTCCAAA 358
Query 516 GGTCATGGATCGTCCTTACAGGTTGTACCATTTGCCTCACGCCCGTCTAT-ATCTTCTCT 574
|||||||||||||||| |||||||||||||||||| ||| |||||||| | ||||||||
Sbjct 359 GGTCATGGATCGTCCTCACAGGTTGTACCATTTGCATCATGCCCGTCT-TCATCTTCTCA 417
Query 575 GGCCCTATCCTCTTAGCCTTAGGTCAAGAGGAACGCATTGTCCGTGTGGCTCGGATCATA 634
|||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||
Sbjct 418 GGCCCTATCCTCTTAGTCTTAGGTCAAGAGGAACGCATTGTTCGTGTGGCTCGGGTCATA 477
Query 635 GCCCTATGGGTCATAGGCATCAACTTCTCTTTTGTGCCTTCCTTCACTTGCCAAATGTTC 694
||||||||| ||||||||||||||||| | || || || |||||||||||||||| |||
Sbjct 478 GCCCTATGGCTCATAGGCATCAACTTCACCTTCGTACCCGCCTTCACTTGCCAAATATTC 537
Query 695 CTCCAAGCTCAGAGCAAGAACAAGATCATTGCCTACGTGGCTGCTGTCTCCTTAGGGGTC 754
|||||| |||||||||||||||||||||| ||||| ||| |||||||| |||||||| ||
Sbjct 538 CTCCAATCTCAGAGCAAGAACAAGATCATCGCCTATGTGTCTGCTGTCACCTTAGGGCTC 597
Query 755 CATGTCTTCTTGTCGTGGCTACTTA-TGGTTCATTTCAATTTTGGGATCACTGGTGCTAT 813
||||| ||||| |||||||| | || |||||||||||||||| |||||||||||||||||
Sbjct 598 CATGTTTTCTTCTCGTGGCT-CCTAGTGGTTCATTTCAATTTCGGGATCACTGGTGCTAT 656
Query 814 GACCTCTACGCTAGTTGCGTTCTGGTTGCCTAATATTGCCCAACTCTTGTTCGTCACGTG 873
||||||||||||||||||||||||||||||||| ||||| || ||||| |||||||||||
Sbjct 657 GACCTCTACGCTAGTTGCGTTCTGGTTGCCTAACATTGCGCAGCTCTTATTCGTCACGTG 716
Query 874 CGGTGGGTGTAAGGACACATGGAGAGGATTCTCTATGATGGCCTTCAAAGATTTATGGCC 933
||||||||||||||||||||||| ||||||| ||||| ||| ||||||||||||||||||
Sbjct 717 CGGTGGGTGTAAGGACACATGGAAAGGATTCACTATGTTGGTCTTCAAAGATTTATGGCC 776
Query 934 CGTCTTCAAACTTTCTATGTCTTCCGGTGGAATGCTTTGCTTGGAACTATGGTACAACTC 993
|||||||||||| ||| ||||||||||||||||| |||||||||| |||||||||||||
Sbjct 777 CGTCTTCAAACTATCTTTGTCTTCCGGTGGAATGGTTTGCTTGGAGTTATGGTACAACTC 836
Query 994 AATCTTGGTACTGCTCACTGGAAATTTGAAAAACGCAGAAGTGGCTCTTGATGCACTAGC 1053
|| || ||| |||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 837 GATATTAGTATTGCTCACTGGAAATATGAAAAACGCAGAGGTGGCTCTTGATGCACTAGC 896
Query 1054 AATCTGCCTCAACATAAATGGACTGGAGATGATGATAGCACTTGGGTTTTTGGCAGCTGC 1113
||||||| ||||| |||||| |||| ||||||||||| ||||||||||||||||||| |
Sbjct 897 AATCTGCATCAACGTAAATGCACTGCAGATGATGATATCACTTGGGTTTTTGGCAGCAGT 956
Query 1114 AAGCGTAAGAGTGTCCAACGAGCTCGGTAGTGG-AAACCCCAAAGGAGCCAAGTTTGCAA 1172
||| ||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||
Sbjct 957 AAGTGTAAGAGTGTCCAACGAGCTCGGTA-TGGGAAACCCCAAAGGAGCCAAATTTGCAA 1015
Query 1173 CACTAACCGCGGTTTTCACATCACTCTCTTTAGGAATAGTTCTATTCTTCGTCTTCTTGT 1232
|| | | ||||||||||| ||||||||| ||||||||||||| ||||| ||||||||||
Sbjct 1016 CATTGATAGCGGTTTTCACGTCACTCTCTATAGGAATAGTTCTGTTCTTTGTCTTCTTGT 1075
Query 1233 TTCTGAGAGGAAGAGTTTCCTACATTTTCACTACAAGTGAAGCTGTCGCAGCCGAAGTTG 1292
|||| || |||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1076 TTCTAAGGGGAAGAATTTCCTACATTTTCACTACAAGTGAAGCCGTCGCAGCCGAAGTTG 1135
Query 1293 CCGATCTTTCTCCGCTTTTAGCCTTTTCCATCCTCATGAATAGTGTTCAACCCGTTCTCT 1352
||||||||||||| || ||||| |||||||||||| |||||||| |||||||||||||||
Sbjct 1136 CCGATCTTTCTCCACTCTTAGCATTTTCCATCCTCCTGAATAGTATTCAACCCGTTCTCT 1195
Query 1353 CTGGAGTTGCCGTCGGAGCTGGATGGCAAGGATATGTTACTTACGTTAACCTTGCTTGCT 1412
||||||| || |||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1196 CTGGAGTGGCAGTCGGAGCGGGATGGCAAGGATATGTGGCTTACGTTAACCTTGCTTGCT 1255
Query 1413 ATTACCTTGTCGGAATTCCTATTGGTATTATCCTTGGTTATGTCGTTGGTTTGCAAGTGA 1472
|||||||| | ||||||||| ||||| | ||||||||||| ||||||||||||||||| |
Sbjct 1256 ATTACCTTCTGGGAATTCCTGTTGGTGTGATCCTTGGTTACGTCGTTGGTTTGCAAGTCA 1315
Query 1473 AAGGCGTATGGATCGGAATGCTCTTTGGAATATTCGTTCAGACTTGTGTGCTTACCGTCA 1532
|||| |||||||| |||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1316 AAGGTGTATGGATTGGAATGCTCTTTGGAATATTCGTTCAGACTTGTGTGCTTAGCATCA 1375
Query 1533 TGACTCTGAGAACAGATTGGGATCAACAGGTGTCAACGTCGTTGAGACGTTTAAATCGGT 1592
||||||| ||||||||||||||||||||||| || |||||||||||| | |||| ||||
Sbjct 1376 TGACTCTCAGAACAGATTGGGATCAACAGGTATCTACGTCGTTGAGAAATATAAACCGGT 1435
Query 1593 GGGTTGTACCAGAATCTAGAGACGTAAACCAAGTATCATCAGAGGAATAA 1642
|||||||||||||||||||||| | ||||||| | |||||||||||||||
Sbjct 1436 GGGTTGTACCAGAATCTAGAGATGCAAACCAAATTTCATCAGAGGAATAA 1485
> Ahg473486 jgi|Araly1|473486|fgenesh2_kg.1__3440__AT1G33080.1
Length=1532
Score = 1474 bits (798), Expect = 0.0
Identities = 1251/1468 (85%), Gaps = 37/1468 (3%)
Strand=Plus/Plus
Query 158 ATGGCCGGAGGAGGAGGAGAGCTCACGGCGGCTTTGTTGAAAAAGACGGCGGAGAACGGC 217
|||| |||||||||||||||| | |||| | || || ||||||||||||||||||| |||
Sbjct 1 ATGGACGGAGGAGGAGGAGAGGTGACGGAGACTCTGCTGAAAAAGACGGCGGAGAATGGC 60
Query 218 GGAGAAGAGAAGGAT-GAGTTAGGGTTGAAGCAAAAGGTTTGGATTGAATCAAAGAAGCT 276
||| | || ||||| || || ||| ||||| | |||||||||| ||||| ||||||||
Sbjct 61 CGAG-A-AG-AGGATGGA-TTGGGGATGAAGGAGAAGGTTTGGAGGGAATCTAAGAAGCT 116
Query 277 ATGGATTGTGGC-GGCGCCAGCGATCTTCACGAGATTCTCAACGTTCGGAGTTTCAATAA 335
|||| ||||||| || || |||||||| ||||||||||| |||| |||| |||| | |
Sbjct 117 ATGGGTTGTGGCTGG-ACCTGCGATCTTTACGAGATTCTCTACGTCCGGACTTTCTTTGA 175
Query 336 TAAGTCAATCTTTCATCGGCCATCTTGGTCCTATAGAGTTGGCTGCTTACTCTATCACCT 395
||| |||| ||||||| ||||| ||||| || | ||||||||||||||||| |||| ||
Sbjct 176 TAACTCAAGCTTTCATTGGCCACCTTGGCCCAACCGAGTTGGCTGCTTACTCCATCA-CT 234
Query 396 -TCACCGTTCTCCTCCGGTTTAGTAATGGTATCTTGTTAGGTATGGCCAGTGCATTGGAA 454
|||||||||||||||| ||||||||||||||||||||||| ||||| ||||| | |||
Sbjct 235 CTCACCGTTCTCCTCCGTTTTAGTAATGGTATCTTGTTAGGCATGGCTAGTGCCCTAGAA 294
Query 455 ACACTATGTGGTCAAGCCTACGGAGCTAAACAAAATCATATGCTCGGGATCTACCTCCAA 514
|||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||
Sbjct 295 ACACTATGTGGTCAAGCCTACGGAGCAAAACAATATCATATGCTTGGGATCTACCTCCAA 354
Query 515 AGGTCATGGATCGTCCTTACAGGTTGTACCATTTGCCTCACGCCCGTCTATATCTTCTCT 574
||||||||||||||||| ||||| |||||||||||||||| |||| | || ||||| ||
Sbjct 355 AGGTCATGGATCGTCCTCACAGGCTGTACCATTTGCCTCATGCCCATATACATCTTTTCG 414
Query 575 GGCCCTATCCTCTTAGCCTTAGGTCAAGAGGAACGCATTGTCCGTGTGGCTCGGATCATA 634
|||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 415 GGCCCTATCCTCTTGGCCTTAGGTCAAGAGGAACGCCTAGTCCGTGTGGCTCGGATCATA 474
Query 635 GCCCTATGGGTCATAGGCATCAACTTCTCTTTTGTGCCTTCCTTCACTTGCCAAATGTTC 694
|| ||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||
Sbjct 475 GCTCTATGGGTCATAGGCATTAACATCTCCTTTGTGCCTTCCTTCACTTGCCAAATGTTC 534
Query 695 CTCCAAGCTCAGAGCAAGAACAAGATCATTGCCTACGTGGCTGCTGTCTCCTTAGGGGTC 754
|||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 535 CTCCAAGCTCAGAGTAAGAACAAGATCATCGCCTACGTGGCTGCTGTCTCGTTAGGGGTC 594
Query 755 CATGTCTTCTTGTCGTGGCTACTTA-TGGTTCATTTCAATTTTGGGATCACTGGTGCTAT 813
|||||||| ||||||||||| |||| |||||||||| |||| |||||| ||||||| ||
Sbjct 595 CATGTCTTGTTGTCGTGGCT-CTTAGTGGTTCATTTTGATTTCGGGATCGCTGGTGCCAT 653
Query 814 GACCTC-TACGCT-AGTTGCGT-TCTGGTTGCCTAATATTGCCCAACTCTTGTTCGTCAC 870
||| || | |||| | | ||| | ||||||||||| ||||| || ||| ||||||| ||
Sbjct 654 GACTTCAT-CGCTCA-TAGCGCAT-TGGTTGCCTAACATTGCGCAGCTCCTGTTCGTTAC 710
Query 871 GTGCGGTGGGTGTAAGGACACATGGAGAGGATTCTCTATGAT-GGCCTTCAAAGAT-TTA 928
||||||||| ||||||||||| ||||||||||||||| || | ||| ||||| ||| ||
Sbjct 711 GTGCGGTGGATGTAAGGACACGTGGAGAGGATTCTCT-TGGTTGGCTTTCAAGGATCTT- 768
Query 929 TGGCCCGTCTTCAAACTTTCTA-TGTCTTCCGGTGGAATGCTTTGCTTGGAACTATGGTA 987
|||||||| || ||||| || | | ||||||||||| ||| |||||||||| ||||||||
Sbjct 769 TGGCCCGTTTTTAAACTATC-AGTATCTTCCGGTGGCATGATTTGCTTGGAGCTATGGTA 827
Query 988 CAACTCAATCTTGGTACTGCTCACTGGAAATTTGAAAAACGCAGAAGTGGCTCTTGATGC 1047
|||||| |||||| | |||||||| ||||| || |||||||| || ||||| ||| | ||
Sbjct 828 CAACTCGATCTTGATTCTGCTCACGGGAAACTTAAAAAACGCTGAGGTGGCCCTTAACGC 887
Query 1048 ACTAGCAATCTGCCTCAACATAAATGGACTGGAGATGATGATAGCACTTGGGTTTT-TGG 1106
||| ||||||||| |||| ||||||| ||||||||||||| |||| ||| || || |||
Sbjct 888 ACTTGCAATCTGCATCAATATAAATGCACTGGAGATGATGGTAGC-CTTCGGCTTCATGG 946
Query 1107 CAGCTGCAAGCGTAAGAGTGTCCAACGAGCTCGGTAGTGGAAACCCCAAAGGAGCCAAGT 1166
|||| ||||| |||||||| || |||||| |||| ||||||||| | ||||||||||| |
Sbjct 947 CAGCAGCAAGTGTAAGAGTTTCAAACGAGATCGGGAGTGGAAACTCTAAAGGAGCCAAAT 1006
Query 1167 TTGCAACACTAACCGCGGTTTTC-ACATCACTCTCTTTAGGAAT-AGTTC-TATTCTTCG 1223
|||| ||| ||| | |||| | |||||||| || ||||||| | | | | ||||| |
Sbjct 1007 TTGCGACAATAATAGTAGTTT-CGACATCACTTTCAATAGGAATCA-T-CATCTTCTTTG 1063
Query 1224 TCTTCTTGTTTCTGAGAGGAAGAGTTTCCTACATTTTCACTACAAGTGAAGCTGTCGCAG 1283
||||| ||||| | |||||||| ||||| |||||||| || ||||||||||||||||| |
Sbjct 1064 TCTTCCTGTTTTTAAGAGGAAGGGTTTCATACATTTTTACAACAAGTGAAGCTGTCGCCG 1123
Query 1284 C-CGAAGTTGCCGATCTTTCTCCGCTTTTAGCCTTTTCCATCCTCATGAATAGTGTTCAA 1342
| | |||| |||||||||||||| || || ||||| ||||| ||| |||| ||||||||
Sbjct 1124 CAC-AAGTAGCCGATCTTTCTCCACTCTTGGCCTTCTCCATTCTCTTGAACAGTGTTCAG 1182
Query 1343 CCCGTTCTCTCTGGAGTTGCCGTCGGAGCTGGATGGCAAGGATATGTTACTTACGTTAAC 1402
|| ||||||||||||||||| || ||||| ||||||||| ||| ||||| |||||||||
Sbjct 1183 CCAGTTCTCTCTGGAGTTGCTGTTGGAGCGGGATGGCAAAAATACGTTACGTACGTTAAC 1242
Query 1403 CTTGCTTGCTATTACCTTGTCGGAATTCCTATT-GGTATTATCCTTGGTTATGTCGTTGG 1461
|||||||||||||||||||| ||||||||| | ||| || | ||||| |||||||||||
Sbjct 1243 CTTGCTTGCTATTACCTTGTTGGAATTCCT-TCCGGTGTTTTTCTTGGCTATGTCGTTGG 1301
Query 1462 TTTGCAAGTGAAAGGCGTATGGATCGGAATGCTCTTT-GGAATATTCGTTCAGACTTGTG 1520
||| ||||| ||||| || ||| | ||| || | ||| ||||| |||||||||||||| |
Sbjct 1302 TTTACAAGTCAAAGGTGTTTGGTTAGGATTGAT-TTTCGGAATCTTCGTTCAGACTTGCG 1360
Query 1521 TGCTTACCGTCATGACTCTGAGAACAGATTGGGATCAACAGGTGTCAACGTCGTTGAGAC 1580
|||||||||| |||||| |||| ||||| ||||||||||||||||| ||||| ||| ||
Sbjct 1361 TGCTTACCGTAATGACTATGAGGACAGACTGGGATCAACAGGTGTCTTCGTCGCTGAAAC 1420
Query 1581 GTTTAAATCGGTGGGTTGTACCAGAATC 1608
|||| || || ||||||| |||||||||
Sbjct 1421 GTTTGAACCGTTGGGTTGAACCAGAATC 1448
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69743238595
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5