BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G33270.1 Length=1588 Score E Sequences producing significant alignments: (Bits) Value Ahg473502 jgi|Araly1|473502|fgenesh2_kg.1__3456__AT1G33270.1 2113 0.0 > Ahg473502 jgi|Araly1|473502|fgenesh2_kg.1__3456__AT1G33270.1 Length=1417 Score = 2113 bits (1144), Expect = 0.0 Identities = 1361/1458 (93%), Gaps = 46/1458 (3%) Strand=Plus/Plus Query 111 CATCCTCATGAGTGTTTTGTGAGCTGCGATGATCGTGTGATTTTCAAATCCCTAACTTTT 170 ||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| Sbjct 1 CATCCTCATGAGTGTTTTGTGTGCTGCGATGATGGTGTGA-TTTCAAATCCCTAACTTTT 59 Query 171 CGAAATTCCCAAAACCCTCAAATAATCTGAGTGTGACCCATTAATCCATGGCGATGTCTC 230 ||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 60 CGAAATT--------CC-CAAATAATCTGAGTGTGACCCATTAATCCATGGCGATGTCTC 110 Query 231 TCCGTTCCACTCCATTCATCTCTCTCCGTACGAGAAAAAGCTTTAACCTTTCTCCGAGAA 290 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 111 TCCGTTCCACTCCATTCATCTCTCTCCGTACAAGAAAAAGCTTTAACCTTTCTCCAAGAA 170 Query 291 TTCTCGCCCTTAG-GTTATCATGCTGCT-CTGGTGGGTCTTCTCAAAATCAGAACTTTTC 348 ||||||||||||| | |||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 171 TTCTCGCCCTTAGAG-TATCATGCTG-TGCTGGTGGGTCTTCACAAAATCAGAACTTTTC 228 Query 349 TACAGATTCCGAGAACAAGAGATCATTCGCTGTTGCCACCGGTGAGCTTTTCATCGGAAT 408 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 229 TACAGATTCCGAGAACAAGAGATCATTCGCTGTTGCCACCGGTGAGCTTTTCATCGGAAT 288 Query 409 CGCGTCGAGGCTTTTGAAGAGTTCTAATCAAAAGACGCCGCCGATTGATGATGGTGATAG 468 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 289 TGCGTCGAGGCTTTTGAAGAGTTCTAATCAAAAGATGCCGCCGATTGATGATGGTGATAG 348 Query 469 AATAGCTAGTGTAATTGAGGATGAGATTGAGCCAGCGATGATATGGGAACAAAGGGTTAA 528 |||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||| Sbjct 349 AATAGCAAGTGTAATTGAAGATGAGATTGAGCCAGCGATGATATGGGAACAAAGGATTAA 408 Query 529 AGATGTTGAAGCGGAGAAAGAGAGGAGAGTCATTACAAGTCCTGGGTTTAGTTTCTCTGC 588 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 409 AGATGTTGAAGCGGAGAAAGAGAGGAGAGTCATTACAAGTCCTGGGTTTAGTTTCTCTGC 468 Query 589 TGCTGGTCTTTTGTTTCCTTATCATCTTGGAGTTGCTCAGTTGCTTATTGAAAAGGGTTA 648 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 469 TGCTGGTCTTTTGTTTCCTTATCATCTTGGAGTTGCTCAGTTGCTTATTGAAAAGGGTTA 528 Query 649 CATAAAGGAAACTACTCCTTTAGCAGGATCTTCTGCTGGTGCTATAGTCTGTGCTGTGAT 708 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 529 CATAAAGGAAACTACTCCTTTAGCAGGATCTTCTGCTGGTGCTATTGTCTGTGCTGTCAT 588 Query 709 AACCTCAGGAGCTACTATGCGAGAAGCCCTTGAAGCTACTAAGGAACTTGCTTATGATTG 768 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 589 AACCTCAGGAGCCACTATGCGAGAAGCCCTTGAAGCTACTAAGGAACTTGCTTATGATTG 648 Query 769 TCGACGCAATGGCACTGCTTTCCGTCTTGGGGCTGTCCTTAGAGAATCCATGGAGAGGTT 828 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 649 TCGACGCAATGGCACTGCTTTCCGTCTTGGGGCTGTCCTCAGAGAATCCATGGAGAGGTT 708 Query 829 ACTGCCCGATGATATTCACATTAGGTCCAACGGGAGAATTCGTGTTGCCATCACTCAAGT 888 |||||| ||||||||||| | ||||||||||||||||||||||||||||||||| || || Sbjct 709 ACTGCCAGATGATATTCATACTAGGTCCAACGGGAGAATTCGTGTTGCCATCACCCAGGT 768 Query 889 GTTTTGGAGACCTAGAGGTCTT-CTAGTGGATCAGTTCGACTCCAAAAGCGACTTGATAG 947 ||| ||||||||||||||| || |||||||||||||| |||||||| ||||||||||||| Sbjct 769 GTTCTGGAGACCTAGAGGT-TTACTAGTGGATCAGTTTGACTCCAAGAGCGACTTGATAG 827 Query 948 ATGCAGTTTTCACATCTTCTTTTATTCCAGGATATCTTGCACCAAGGCCTGCAACAATGT 1007 |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 828 ATGCAGTTTTCACATCTTCTTTTATTCCAGGATATCTTGCACCAAGACCTGCAACGATGT 887 Query 1008 TCCGTAATCGACTTTGTGTTGATGGAGGCTTGACATTGTTTATGCCACCAACAGCTGCTG 1067 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 888 TCCGTAATCGACTTTGTGTTGATGGAGGCTTGACATTGTTTATGCCACCAACAGCTGCTG 947 Query 1068 CTAAAACAGTTCGAGTTTGTGCTTTTTCCGCTAGTAACTTCAAACTAAAGGGTATTGAGA 1127 ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| Sbjct 948 CTAAAACAGTTCGAGTTTGTGCTTTTTCCCCGAGTAACTTCAAACTAAAGGGTATTGAGA 1007 Query 1128 TCTGCCCAGATTGCAACCCTTTAAACAGAGCAACATCTAGACAACTATTGAATTGGGCAC 1187 |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| Sbjct 1008 TCTGCCCAGATTGCAACCCTTTAAACAGGGCAACATTTAGACAACTATTGAATTGGGCAC 1067 Query 1188 TTGAGCCAGCAGAGGACGAGGTGTTGGAGAGGCTGTTTGAGTTAGGATACGCAGATGCAG 1247 |||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||| Sbjct 1068 TTGAGCCAGCAGAGGACGAGGTGTTGGAAAATCTGTTTGAGTTGGGATACGCAGATGCAG 1127 Query 1248 CTACATGGGCTGAGATGAATCCAGTTGAGGGATTGGTCTATGACGATACTCCTACAGCTC 1307 |||| ||||||||||||||||||||||||| | |||||||||||||||||||||| |||| Sbjct 1128 CTACGTGGGCTGAGATGAATCCAGTTGAGGAACTGGTCTATGACGATACTCCTACCGCTC 1187 Query 1308 AAGAGATTCCTACT-AGCTAAGAACTCACGAACTCAATACTATATAACAGTACCATATAT 1366 |||||||| ||||| || ||||||| ||||||||||||||||||| |||||| || | | Sbjct 1188 AAGAGATTGCTACTTAGTTAAGAACACACGAACTCAATACTATATTACAGTA--AT-TCT 1244 Query 1367 TATCGCGGTACAAAATATTCAGATAGTTTTCCAGAAGCTGGCTTTAAAGTCACAGAAAGT 1426 | | || | | ||| ||||||||||||| |||||||||||||||| Sbjct 1245 ----G----A-----TA----G-T--TTT-CCAGAAGCTGGCTCTAAAGTCACAGAAAGT 1283 Query 1427 TGTAGTTCTTAGATCAAACAAAGTAAATGGTACATCACTTTTAGTCGGAGTTCATACACT 1486 ||||||||||||||||||||||| ||||||||||||||| | ||| | |||||| ||| Sbjct 1284 TGTAGTTCTTAGATCAAACAAAGCAAATGGTACATCACTATCAGTTG---TTCATATACT 1340 Query 1487 TGTTCATCAA-AATAACATGTGCTTCGAGGAGTCGCTGTTAAGACCAAACCATTCTCAAT 1545 |||||||||| || |||||||||||||||| |||||| ||| ||||||| |||||||||| Sbjct 1341 TGTTCATCAAGAA-AACATGTGCTTCGAGGCGTCGCTATTAGGACCAAAACATTCTCAAT 1399 Query 1546 AGAGTTGTCCACAAATTT 1563 |||||||||||||||||| Sbjct 1400 AGAGTTGTCCACAAATTT 1417 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59496962690 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5