BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G33290.1 Length=1281 Score E Sequences producing significant alignments: (Bits) Value Ahg473506 jgi|Araly1|473506|fgenesh2_kg.1__3460__AT1G33290.1 1820 0.0 > Ahg473506 jgi|Araly1|473506|fgenesh2_kg.1__3460__AT1G33290.1 Length=1237 Score = 1820 bits (985), Expect = 0.0 Identities = 1169/1256 (93%), Gaps = 20/1256 (2%) Strand=Plus/Plus Query 23 AACTATGGCCGGAGTTTGCGTCCCATGGGGCGGCGGAGCTTGTCGTCTTATTTCCCCAAT 82 |||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1 AACTATGGCCGGCGTGTGCGTCCCATGGGGCGGCGGAGCTTGTCGTCTTTTTTCCCCAAT 60 Query 83 TCGCCGGCGTTTTCCGGTTTCCTCCTCCGTCGCTTCTCTTGCTCTTCCAGACTCCTCCTC 142 | ||||||||| ||||||||||||| |||||||||| ||| |||||||||| |||||| | Sbjct 61 TAGCCGGCGTTCTCCGGTTTCCTCCACCGTCGCTTCCCTTTCTCTTCCAGATTCCTCCGC 120 Query 143 TATGATCGTCGACGACAATCTCGGCGCATTTCTCGAGATTCTTCCAAAAGATCTTCGTCA 202 |||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||| Sbjct 121 TATGATTATCGACGACAATCTCACCGCATTTCTTGAGATTCTTCCAAAAGATCTTCGTCA 180 Query 203 CCGTCTCTTGAACGATTCAAGAAGAAACCAGCTCGTAGAGGTCATAATGGATTTAGGAAG 262 |||||| |||||||||| |||||||||||||||||||||| || |||||||| || || Sbjct 181 TCGTCTCCTGAACGATTCTCGAAGAAACCAGCTCGTAGAGGTGATTATGGATTTGGGGAG 240 Query 263 ACCACCTGAAGCACGTTATCTCGGAGAACCTGGAGGTCAATATCTTAGGAACAACGAGGT 322 ||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||| Sbjct 241 ACCACCTGAAGCACGTTATCTTGGAGAACCTGGAGGCCAGTATCTTAGGAACAACGAGGT 300 Query 323 ATCTATGGAAGAGTTAGAGGATGCTCAAGAGCTTGTAGGTGAGTTTGGAGCTGATAATAG 382 ||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||| Sbjct 301 ATCTATGGAAGAGTTAGAGGATGCTCAAGAGCTGGTAGGTGAATTTGGGGCTGATAATAG 360 Query 383 AGCTGGAATAGAAGGTACATTGCACAGGATATCAGCTATTCGTAATCGGAAGGGATTCAT 442 |||||||||||||||||||||||||||||||||||||||||||||||||| || || || Sbjct 361 GGCTGGAATAGAAGGTACATTGCACAGGATATCAGCTATTCGTAATCGGAAAGGCTTTAT 420 Query 443 TGTCGGTTTAACTTGTCGTGTTGGGAGAGCTGTGAGTGGTCACATTGACATGCTTTATGA 502 ||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 421 TGTCGGTTTGACTTGTCGGGTTGGGAGAGCTGTGAGTGGTCACATTGACATGCTCTATGA 480 Query 503 TCTTCTTCACTATGGCAAAAGCATCTTGTTCGTTGGACGGCCTGGTGTTGGTAAGACCAC 562 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 481 CCTTCTTCACTATGGCAAAAGCATCTTGTTCGTTGGACGGCCCGGTGTTGGTAAGACCAC 540 Query 563 TGTTTTGCGAGAGATTGCTCGTGTCTTGTCTGATGAATTCCAGAAAAGAGTGGTGATAAT 622 |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 541 TGTTTTGCGAGAGATTGCCCGTGTCTTGTCCGATGAATTCCAGAAAAGAGTGGTGATAAT 600 Query 623 TGATACAAGCAACGAAATAGGAGGAGATGGTGATATTCCACACTCAGCTATTGGAGGTTC 682 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 601 TGATACAAGCAACGAAATAGGAGGAGATGGCGATATTCCACACTCAGCTATTGGAGGTTC 660 Query 683 GCGTAGAATGCAAGTACCTAAGCCATCTTTGCAGCATAAAGTGATGATTGAGGCAGTTGA 742 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 661 GCGTAGAATGCAAGTACCTAAGCCATCATTGCAGCATAAAGTGATGATTGAGGCAGTAGA 720 Query 743 GAATCATATGCCTCAAGTGATCATCGTTGATGAGATTGGCACAGAAGCTGAAGCACTTGC 802 ||| |||||||||||||||||||||||||||||||| || |||||||||||||| ||||| Sbjct 721 GAACCATATGCCTCAAGTGATCATCGTTGATGAGATCGGTACAGAAGCTGAAGCGCTTGC 780 Query 803 TTGTCGTTCCATTGCTGAAAGAGGAGTGATGCTAATTGGCACTGCTCATGGAGAGCAGCT 862 |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 781 CTGTCGTTCCATTGCTGAAAGGGGAGTGATGCTTATTGGCACTGCTCATGGAGAGCAGCT 840 Query 863 ACAGAACATCATAAAGAATCCTACTCTTTCAGACTTGATTGGTGGTATTGAGACTGTAAC 922 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || Sbjct 841 ACAGAACATCATAAAGAATCCTACTCTTTCAGACCTGATTGGTGGTATTGAGACTGTCAC 900 Query 923 GCTTGGAGATGAAGAAGCGAGGGCGAGAAGGAGTCAGAAGAGTATTCTCGAGAGAAAAGC 982 ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 901 TCTTGGAGATGAAGAAGCGAGGGCAAGAAGGAGTCAAAAGAGTATTCTCGAGAGAAAAGC 960 Query 983 TCCACCGACtttttattttttGATCGAGATGAGAGAAAGAGATTATTGGATTGCACATCA 1042 ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 961 TCCACCGACCTTTTATTTCCTGATCGAGATGAGAGAAAGAGATTATTGGATTGCACATCA 1020 Query 1043 AACTGAAAAGAGTGTTGATATGTTGCTTCGCGGAAGAAATCCCATGGTTGAGGTGAGGAG 1102 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1021 AACTGAAAAAAGTGTTGATATGTTGCTTCGCGGAAGAAATCCCATGGTTGAGGTGAGGAG 1080 Query 1103 AAGGGATGAAGAGTACAAGGTGGTGATAGAAAGATGGAAGGCATACGACGGGCAAGGCAT 1162 ||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1081 AAGAGATGAGGAGTACAAGGTGGTGATAGAAAGATGGAAGGCGTACGACGGGCAAGGCAT 1140 Query 1163 TTGAG-TTTCCTTCATCGTTGTCAAACTTATGACACTAACAGTAAATGTGTCTTTCTTAA 1221 ||| |||| ||||||||||||||| | | | | ||| ||||||||| Sbjct 1141 CTGATCTTTC-TTCATCGTTGTCAAA---A--A---T-----T---TGT--CTTTCTTAA 1181 Query 1222 ATGATCAACCATTTGTGTAAAATAATCAAAAGAAAACAATAAGCATGCATCCGTCT 1277 |||||||||||||||| |||||||||||||||||||| ||||||||||||| |||| Sbjct 1182 ATGATCAACCATTTGTATAAAATAATCAAAAGAAAACGATAAGCATGCATCAGTCT 1237 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47882383752 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5