BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G33330.1 Length=1081 Score E Sequences producing significant alignments: (Bits) Value Ahg473511 jgi|Araly1|473511|fgenesh2_kg.1__3465__AT1G33330.1 1343 0.0 Ahg948629 jgi|Araly1|948629|scaffold_800516.1 492 3e-138 > Ahg473511 jgi|Araly1|473511|fgenesh2_kg.1__3465__AT1G33330.1 Length=983 Score = 1343 bits (727), Expect = 0.0 Identities = 905/990 (91%), Gaps = 16/990 (2%) Strand=Plus/Plus Query 18 ATGGCGATCATGGCCGTTGCCGCTCTCTTTCACGCCCGCTTCCCTCTTCTCCTCCGTCGC 77 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1 ATGGCGATCATGGCCGTTGCCGCTCTCTTTCACGCCCGCTTCCCTCTTCTCCTCCGTCAC 60 Query 78 AGTATCCCGT-TACTGTCGGCTCCT-ACTTCTGTTATTTACAATCACAGAACTCTTCTAT 135 ||| |||||| || || || || |||| || || ||| ||| ||| ||| ||| || Sbjct 61 AGTGTCCCGTCCAC-GTTTTCT-CTGTCTTCCGTCATATACTATCGCAGGACTGTTCCAT 118 Query 136 CCGATGGACTCAGTACTCGATTATGCTCGATTCTCCGTTATTCATCGTCTGACGGCGTCA 195 || | ||||||||||| ||||| |||||||||||||||||||||||||| || || | Sbjct 119 CCAACGGACTCAGTACCCGATTCTGCTCGATTCTCCGTTATTCATCGTC---CGTCGACG 175 Query 196 ACGGCGGAAGTAGCGGTGGCGATTTCGGTAACGATAACGATTCCGTTAGTGTTGTTTCGG 255 ||| ||||||||| ||||||||| || || | || |||||||||||| |||||| ||| Sbjct 176 GCGGTGGAAGTAGCAGTGGCGATTCCGTTAGCTTTAGCGATTCCGTTAGCGTTGTTGCGG 235 Query 256 ATGTTCAGAGTCCTAATTACTTAAAATTCACCGATGAAGAATTGATGAAGCAATGTAGAT 315 |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| Sbjct 236 ATGTTCAGAGTCCTAATTACTTGAAATTCACCGATGATGAATTGATGAAGCAATGTAGAT 295 Query 316 TAGAGACATTTAGAGTTTCAGGACCTGGAGGACAACACCGGAACAAGCGTGACTCCGCCG 375 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 296 TAGAGACATTCAGAGTTTCAGGACCTGGAGGACAACACCGGAACAAGCGTGACTCCGCCG 355 Query 376 TGCGTCTGAAACATCTCCCCACCGGAATCGTAGCTCAAGCCGTCGAAGATCGTTCACAGC 435 ||||||| ||||||||||||||||||||||| ||||| |||||||| ||||||||||||| Sbjct 356 TGCGTCTCAAACATCTCCCCACCGGAATCGTTGCTCAGGCCGTCGAGGATCGTTCACAGC 415 Query 436 ACAAGAACCGTGCTTCTGCTCTAAACCGTCTTCGTACGCTCCTCGCCATTAAAGTGAGAA 495 |||||||||||||||||||||||||||| |||||||||||||| || || |||||||| | Sbjct 416 ACAAGAACCGTGCTTCTGCTCTAAACCGGCTTCGTACGCTCCTGGCAATCAAAGTGAGGA 475 Query 496 ACAAAGTGGACATTGAAGCTTATGCTCCTCCTCCAGAGCTTCTTCAGATTCTACCTCCTA 555 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 476 ACAAAGTGGACCTTGAAGCTTATGCTCCTCCTCCAGAGCTTCTTCAGATTCTACCTCCCA 535 Query 556 AGTCTACCATTAGAACTTCTTCTGGTTCACAGATTGGTCCCAACAATCCTAAATTTGTAC 615 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 536 AGTCTACTATAAGAACTTCTTCTGGTTCACAGATTGGTCCCAACAATCCTAAATTTGTAC 595 Query 616 CTGGAATGCAAGCTTTGCTTGATGTTATTTCTGCTTCTGACGGTTCTATCGCTGATTCTG 675 |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 596 CTGGAATGCAAGCTTTGCTTGATGTTATTTCTGCTTCTGATGGTTCTATCGCCGATTCTG 655 Query 676 CCAAATTGCTGGGTTTGAGCACTGGTGGCTTATCTCGTTTGATACTCTCCCATGATGGTC 735 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 656 CCAAATTACTTGGTTTGAGCACTGGTGGCTTATCTCGTTTGATACTCTCCCATGATGGTC 715 Query 736 TTCGTATGGCTGTCAATAGCATGAGAGCAGCCAAGGGAATAAAGCCTCTCAAATAGTTGG 795 |||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 716 TTCGTATGGCCGTCAATAGCATGAGGGCAGCCAAGGGAATTAAGCCTCTCAAATAGTTGG 775 Query 796 GATGTATCGGCATTTGAAAGATGACGTTCGGGCCTTCGACAAGTTGTAT---G-TGGATT 851 ||||||||||||||||||||||||||| |||| ||| ||| |||||||| | ||| || Sbjct 776 GATGTATCGGCATTTGAAAGATGACGTGCGGGTCTTTGACGAGTTGTATTTAGGTGGCTT 835 Query 852 --GCAGCACAGTGATTACCATTTTATGCACCATATTTTGTATACaaaaaaaaaGGTGAAA 909 |||||||||||| |||||||| |||||||| || |||||||||||| ||| ||||||| Sbjct 836 CTGCAGCACAGTGACTACCATTTGATGCACCACATATTGTATACAAAACAAA-GGTGAAA 894 Query 910 TGTTGAGTTCAGTTTAACATTTGTTCTTCTAACATCATAAAAATAGTCACGTATTTGAGA 969 ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 895 TGTTGAGTTCAGTCTAACATTTGTTCTTCTAACATCATAAAAATAGTCACGTGTTTGAGA 954 Query 970 TGATATACTATAGGT-TGTTCAAATGGTTA 998 ||||||||||||| | |||||||||| ||| Sbjct 955 TGATATACTATAG-TCTGTTCAAATGTTTA 983 > Ahg948629 jgi|Araly1|948629|scaffold_800516.1 Length=433 Score = 492 bits (266), Expect = 3e-138 Identities = 344/381 (90%), Gaps = 7/381 (2%) Strand=Plus/Plus Query 1 GCGGTGGTTCTTCTGCCATGGCGATCATGGCCGTTGCCGCTCTCTTTCACGCCCGCTTCC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4 GCGGTGGTTCTTCTGCCATGGCGATCATGGCCGTTGCCGCTCTCTTTCACGCCCGCTTCC 63 Query 61 CTCTTCTCCTCCGTCGCAGTATCCCGTT-ACTGTCGGCTCC-TACTTCTGTTATTTACAA 118 ||||||||||||||| |||| ||||||| || || ||| | ||||||| || ||| | Sbjct 64 CTCTTCTCCTCCGTCACAGTGTCCCGTTCAC-GTTTTCTCTGT-CTTCTGTCATATACTA 121 Query 119 TCACAGAACTCTTCTATCCGATGGACTCAGTACTCGATTATGCTCGATTCTCCGTTATTC 178 || ||| ||| ||| |||||||||||||||||| |||||||||||||||||||||||||| Sbjct 122 TCGCAGGACTGTTCCATCCGATGGACTCAGTACCCGATTATGCTCGATTCTCCGTTATTC 181 Query 179 ATCGTCTGACGGCGTCAACGGCGGA--A-GTAGCGGTGGCGATTTCGGTAACGATAACGA 235 |||| | ||||||| | ||||||| | |||| ||||||||| ||||| || |||||| Sbjct 182 ATCGCCCGACGGCGGCGGCGGCGGAGGAAGTAGTAGTGGCGATTCCGGTAGCGTTAACGA 241 Query 236 TTCCGTTAGTGTTGTTTCGGATGTTCAGAGTCCTAATTACTTAAAATTCACCGATGAAGA 295 ||||||||| |||||| | ||||||||||||||||||||||| |||||||||||||| || Sbjct 242 TTCCGTTAGCGTTGTTGCAGATGTTCAGAGTCCTAATTACTTGAAATTCACCGATGATGA 301 Query 296 ATTGATGAAGCAATGTAGATTAGAGACATTTAGAGTTTCAGGACCTGGAGGACAACACCG 355 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 302 ATTGATGAAGCAATGTAGATTAGAGACATTTAGAGTTTCAGGACCTGGAGGAAAACACCG 361 Query 356 GAACAAGCGTGACTCCGCCGT 376 ||||||||||||||||||||| Sbjct 362 GAACAAGCGTGACTCCGCCGT 382 Score = 93.5 bits (50), Expect = 3e-18 Identities = 52/53 (98%), Gaps = 0/53 (0%) Strand=Plus/Plus Query 426 CGTTCACAGCACAAGAACCGTGCTTCTGCTCTAAACCGTCTTCGTACGCTCCT 478 |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 380 CGTTCACAGCACAAGAACCGTGCTTCTGCTCTGAACCGTCTTCGTACGCTCCT 432 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40257800352 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5