BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G34000.1 Length=824 Score E Sequences producing significant alignments: (Bits) Value Ahg922501 jgi|Araly1|922501|scaffold_103782.1 856 0.0 > Ahg922501 jgi|Araly1|922501|scaffold_103782.1 Length=566 Score = 856 bits (463), Expect = 0.0 Identities = 534/567 (94%), Gaps = 10/567 (2%) Strand=Plus/Plus Query 46 CAATTCAACT-AACaaaaaaaTGTCAGTAGCTTCACCGATTCAATGTATCAGGATTCTAA 104 |||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1 CAATTCAACTAAACGAAAAGATGTCAGTAGCTTCACCGATTCAATGTATCAGGATTCTAA 60 Query 105 ATCCATCATC-T--TCATC-T--TCTTCTTCGACAGCTTCGTCGTCTTTTAGATTCTCAA 158 |||||||||| | || || | |||||||| |||||||||||||||||||||||||||| Sbjct 61 ATCCATCATCTTCCTCTTCTTCATCTTCTTCAACAGCTTCGTCGTCTTTTAGATTCTCAA 120 Query 159 CAACGACTAAGCCATGTGTCTTCATCATCAGATGCTCTCAGACAGAAGGTCCTTTAAGAA 218 | ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 121 CGACGACTAAGCCATGTGTATTCATCATCAGATGTTCTCAGACAGAAGGTCCTTTAAGAA 180 Query 219 GACCATCGGCTCCTCCTACTCTCCGGGAGCCTCAAAAACCTGTTCCTCCATCACAGCCAT 278 | || |||||||||||||||||||||||||| |||||||||||||||||||| ||||| | Sbjct 181 GGCCCTCGGCTCCTCCTACTCTCCGGGAGCCGCAAAAACCTGTTCCTCCATCGCAGCCGT 240 Query 279 CTTCCT-CTCCTCCTCCTTCTCCGCCGCCGCAGAAAGCTGTAGCTGTTGATGGGAAGAGT 337 ||| || ||||||||||| |||| ||||||||||||||||| |||||||||||||||||| Sbjct 241 CTT-CTGCTCCTCCTCCTCCTCCCCCGCCGCAGAAAGCTGTGGCTGTTGATGGGAAGAGT 299 Query 338 GTAACTACAGTGGAGTTTCAGAGACAAAAGGCTAAAGAGCTTCAAGAGTACTTTAAACAG 397 |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 300 GTAACTACGGTGGAGTTTCAGAGACAGAAGGCTAAAGAGCTTCAAGAGTACTTTAAACAG 359 Query 398 AAAAAGCTTGAAGCTGCTGGTCAAGGTCCCTTTTTTGGTTTCCAACCCAAAAATGAGATC 457 || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 360 AAGAAGCTTGAAGCTGCTGGTCAAGGTCCTTTTTTTGGTTTCCAACCCAAAAATGAGATC 419 Query 458 TCCAATGGAAGGTGGGCTATGTTTGGTTTCGCAGTTGGTATGCTCACAGAGTATGCAACA 517 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 420 TCCAATGGAAGGTGGGCTATGTTTGGTTTCGCAGTTGGAATGCTCACAGAGTATGCAACA 479 Query 518 GGATCAGACCTTGTTGATCAAGTTAAGATCCTTCTCTCAAATTTCGGCATTCTAGACTTG 577 |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| Sbjct 480 GGATCAGACCTTGTTGATCAAGTTAAGATCCTTCTCTCGAATTTCGGCATTGTAGACTTG 539 Query 578 GAATAATAAGAGTGTTGTTGTTATATA 604 ||||||||||||||||||| | ||||| Sbjct 540 GAATAATAAGAGTGTTGTTAT-ATATA 565 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30460210683 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5