BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G34060.1
Length=1603
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473561 jgi|Araly1|473561|fgenesh2_kg.1__3515__AT1G34060.1 2178 0.0
Ahg473558 jgi|Araly1|473558|fgenesh2_kg.1__3512__AT1G34040.1 1567 0.0
> Ahg473561 jgi|Araly1|473561|fgenesh2_kg.1__3515__AT1G34060.1
Length=1539
Score = 2178 bits (1179), Expect = 0.0
Identities = 1406/1515 (93%), Gaps = 18/1515 (1%)
Strand=Plus/Plus
Query 1 GTAATTGATCCCCACCTTTTATACAAACAAAAAGTTGAAGCTGAAttttttttGCAGGTT 60
|||||||||||||||||||| ||| |||||||||||||||| || |||||||||||||
Sbjct 1 GTAATTGATCCCCACCTTTTTTACTTACAAAAAGTTGAAGCTTAA--TTTTTTGCAGGTT 58
Query 61 TTAAGTAAAGATGATGCAGAAGAAGCTACTTCTTATAGTATCAATCATCTTGAATCTCGT 120
||||||||||| ||||||||||||||||||||||| ||| |||||| | |||||||||||
Sbjct 59 TTAAGTAAAGACGATGCAGAAGAAGCTACTTCTTACAGTGTCAATCTTTTTGAATCTCGT 118
Query 121 ATTCACCATTCATATTCTTTATTATAGTTCAACCACATGGAATCCAACGTGGACCAAC-A 179
||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||| || |
Sbjct 119 ATTCACCGTTCATATTCTTTATTATAGTTCAACTACATGGAATCCGACGTGGACC-ACTA 177
Query 180 GAGCTGCAGCGGAAGCAGAAACTGTAGCCTCTTTTTCATGCTCAGGCCACGGCAGAGCTT 239
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GAGCTGCCGCGGAAGCAGAAACTGTAGCCTCTTTTTCATGCTCAGGCCACGGCAGAGCTT 237
Query 240 TTGTGGATGGTCTTGGTGTCCTTGACGGCCAGAAACCTCCTTGTGAGTGCAACAATTGCT 299
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 238 TTGTGGATGGTCTTGGTGTCCTTGATGGCCAGAAACCTTCTTGTGAGTGCAACAATTGCT 297
Query 300 ACATAGGAAAAGATTGCTCCGTTCTTCTCAAAGATTGTCCTGTCGATGCTAACTCAGGAG 359
||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 298 ACACCGGAAAAGATTGCTCTGTTCTTCTCAAAGATTGTCCTGTCGATGCTAACTCAGGAG 357
Query 360 ACCCTTTGTTCTTGGAGCCTTTCTGGATGCGACAAGCAGAGAGAAGCGCGATTTTGGTCT 419
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 358 ACCCTTTGTTCTTGGAGCCTTTCTGGATGCGACAAGCAGAGAGCAGCGCGGTTTTGGTCT 417
Query 420 CGGGATGGCACAGGATGAGTTATATATA-CGAAGATGGGACATATGTGTCTCGAGAGCTC 478
|||||||||||||||||||||| || || | |||||||||||||||||||||||||||||
Sbjct 418 CGGGATGGCACAGGATGAGTTACATTTATC-AAGATGGGACATATGTGTCTCGAGAGCTC 476
Query 479 GAGAAGGTCATTAGAAAACTTCATAGTGTAGTGGGAAATGCAGTTACAGATAACAGATTC 538
|||||||||||||| ||||| |||||||| |||||||| || ||||||||||||||||||
Sbjct 477 GAGAAGGTCATTAGGAAACTGCATAGTGTTGTGGGAAACGCTGTTACAGATAACAGATTC 536
Query 539 GTAATCTTTGGATCTGGTACCACACAATTGCTTGCAGCAGCTGTTCATG-CCTTGTCTTT 597
||||||||||||||||| |||||||||||||| ||||||||||| |||| ||| ||||||
Sbjct 537 GTAATCTTTGGATCTGGAACCACACAATTGCTGGCAGCAGCTGTACATGTCCT-GTCTTT 595
Query 598 GACAAACTCATCAGTATCATCACCTGCAAGACTTCTGACTTCTATTCCATACTATGCTAT 657
||||||||||||| |||||||||||||||| ||| ||||||||||||||||||| |||||
Sbjct 596 GACAAACTCATCATTATCATCACCTGCAAGGCTTTTGACTTCTATTCCATACTACGCTAT 655
Query 658 GTACAAGGACCAAGCAGAGTTTTTTGATTCAGCACATCTCAAGTTTGAAGGAAATGCGTC 717
||| ||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 656 GTATAAGGACCAAGCGGAGTTCTTTGATTCAGCACATCTCAAGTTTGAAGGAGATGCGTC 715
Query 718 TGCGTGGAAGCAGAGCGGACGCAATGATAATATCACACAAGTTATAGAGGTGGTGACATC 777
|||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||
Sbjct 716 TGCGTGGAAGCAGAGCGGACGCAATGATAATACCACACAAGTTATAGAGGTAGTAACATC 775
Query 778 TCCGAATAATCCAGATGGGAAATTGAAAAGAGCGGTTCTT-GATGGTCCTAATGTGAAAA 836
||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 776 TCCAAATAATCCAGATGGGAAATTGAAAAGAGCGGTT-TTAGATGGTCCTAATGTGAAAA 834
Query 837 CACTTCATGATTATGCTTATTACTGGCCTCATTTCTCACCTATTACACATCCAGTTGATG 896
| | ||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 835 TAGTGCATGATTTTGCTTATTACTGGCCTTATTTCACACCTATTACACATCCAGTTGATG 894
Query 897 AAGATTTGAGCCTGTTTAGTCTCTCCAAGACTACAGGTCATGCTGGTTCAAGATTCGGGT 956
|| |||||||| |||| |||||||| ||| |||||||||||||||| |||||||||||||
Sbjct 895 AAAATTTGAGCTTGTTCAGTCTCTCAAAGGCTACAGGTCATGCTGGCTCAAGATTCGGGT 954
Query 957 GGGGATTGGTAAAGGACAAAGCTATTTATGAAAAAATGGATAGATTTATACGTTTAACTA 1016
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 955 GGGGATTGGTAAAGGACAAAGCTATTTATGAAAAAATGGACAGATATATACGTTTAACTA 1014
Query 1017 GTATGGGAGTTTCTAAAGAAACACAGCTTCATGTTCTTCAGTTGCTCAAAGTAGTAGTTG 1076
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 GTATGGGAGTTTCCAAAGAAACACAGCTTCATGTTCTTCAGTTGCTCAAAGTAGTAGTTG 1074
Query 1077 GTGATGGAGGCAATGAGATATTCAGTTTTGGTTATGGAACTGTGAAGAAAAGATGGGAGA 1136
| ||| ||||| |||| ||||||| |||||| ||||||||| ||||||||||||||||||
Sbjct 1075 GCGATAGAGGCGATGATATATTCAATTTTGGCTATGGAACTCTGAAGAAAAGATGGGAGA 1134
Query 1137 CACTGAACAAGATCTTCTCCATGTCCACGCGTTTCTCGCTCCAGACAATCAAACCTGAGT 1196
||||||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||
Sbjct 1135 TACTGAACAAGATCTTGTCCATTTCCACGCGTTTCTCGCTCCAGACTATCAACCCTGAGT 1194
Query 1197 ACTGCAACTATTTCAAGAAAGTTAGAGAGTTTACTCCTTCTTATGCATGGGTGAAGTGTG 1256
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1195 ACTGCAACTATTTCAAGAAAGTCAGAGAGTTTACTCCTTCTTATGCATGGGTGAAGTGTG 1254
Query 1257 AGAGACCAGAAGACACAAACTGCTATGAGATTTTCAGAGCGGCGAAGATAACAGGACGCA 1316
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 AGAGACCAGAAGATACAAACTGCTATGAGATTTTCAGAGCGGCGAAGATAACAGGACGCA 1314
Query 1317 ATGGCAATGTGTTTGGATCAGAAGAAAGGTTTGTGCGATTGAGTCTCATCAGATCACAAG 1376
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1315 ATGGCAATGTGTTTGGATCAGAAGAAAGGTTTGTTCGATTGAGTCTCATCAGATCACAAG 1374
Query 1377 ATGACTTTGATCAGCTTATTGCTATGTTGAAGAAGTTAGTTTACCATGAGGAAGATGTTC 1436
||||||||||||||||||||| |||||||||||||||||| | || ||||||| ||
Sbjct 1375 ATGACTTTGATCAGCTTATTGATATGTTGAAGAAGTTAGTCT-CC--GAGGAAGCCGTAG 1431
Query 1437 CTTCTGAAAACTT-T-ATGTATATTTAGGCCTCTTTG-TTAAAGCCTAGCGCTTAGTCCA 1493
|||| | | | || | || |||||||||||| |||| |||||||| |||| ||
Sbjct 1432 GAGCTGACTCCATCTGATATTTACTTAGGCCTCTTTAATTAA-GCCTAGCG-TTAGGCCC 1489
Query 1494 ATTCTATAAAACCTC 1508
|||||||||||||||
Sbjct 1490 ATTCTATAAAACCTC 1504
> Ahg473558 jgi|Araly1|473558|fgenesh2_kg.1__3512__AT1G34040.1
Length=1383
Score = 1567 bits (848), Expect = 0.0
Identities = 1215/1387 (88%), Gaps = 46/1387 (3%)
Strand=Plus/Plus
Query 71 ATGATGCAGAAGAAGCTACTTCTTATAGTATCAATCATCTTGAATC-TCGTATTCACCAT 129
|||||||| || |||||||| || ||| || || |||||||||| || |||||||| |
Sbjct 1 ATGATGCATAACAAGCTACTAGTTGCAGTGTCGATAATCTTGAATCTTC-TATTCACCGT 59
Query 130 TCATATTCTTTATTATAGTTCAACCACATGGAATCCAACGTGGACCAACAGAGCTGCAGC 189
||||||||||||| ||| |||||||||||||| ||||||||||||| | ||||| || |
Sbjct 60 TCATATTCTTTATAATAATTCAACCACATGGAGTCCAACGTGGACCGATAGAGCCGCCTC 119
Query 190 GGAAGCAGAA-ACTGTAGCCTCTTTTTCATGCTCAGGCCACGGCAGAGCTTTTGTGGATG 248
||| |||||| | || ||| ||| |||| ||||||||||| |||||||||| |||||| |
Sbjct 120 GGAGGCAGAAGA-TGCAGCTTCTGTTTCTTGCTCAGGCCATGGCAGAGCTTATGTGGACG 178
Query 249 GTCTTGGTGTCCTTGACGGCCAGAAACCTCCTTGTGAGTGCAACAATTGCTACATAGGAA 308
|||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||| |
Sbjct 179 GTCTTGGTGTCCTTGACGGCCATAAACCTCCTTGTGAGTGCAATAATTGCTACACAGGCA 238
Query 309 AAGATTGCTCCGTTC-TTCTCA-AAGATTGTCCTGTCGATGCTAACTCAGGAGACCCTTT 366
||||||||||| ||| || | | ||||||||||||||||||| ||||||||||||||||
Sbjct 239 AAGATTGCTCC-TTCTTTGT-ACCAGATTGTCCTGTCGATGCTGACTCAGGAGACCCTTT 296
Query 367 GTTCTTGGAGCCTTTCTGGATGCGACAA-GCAGAGAGAAGCGCGATT-TTGGTCTCGGGA 424
||| ||||||||||||||||| ||| || |||||| |||| ||| || || | || |||
Sbjct 297 GTTTTTGGAGCCTTTCTGGATTCGA-AACGCAGAGGGAAGTGCGGTTGTT-GAGTCAGGA 354
Query 425 TGGCACAGGATGAGTTA-T-ATAT-ACGAAGATGGGACATATGTGTCTC-G-AGAGCTCG 479
||||||||||||||||| | ||| ||| || || | ||| ||| || | |||||| |
Sbjct 355 TGGCACAGGATGAGTTATTCCTATCACGGCTAT-GG-CTTATTTGTGTCGGCAGAGCTTG 412
Query 480 AGAAGG-TCATTAGAAAACTTCATAGTGTAGTGGGAAATGCAGTTACAGATAACAGATTC 538
|| ||| |||||||||| || |||| ||| ||||||||||||||||| ||||||||||||
Sbjct 413 AG-AGGATCATTAGAAAGCTACATAATGTGGTGGGAAATGCAGTTACTGATAACAGATTC 471
Query 539 GTAATCTTTGGATCTGGTA-CCACACAATTGCTTGCAGCAGCTGTTCATGCCTTGTCTTT 597
| ||||| ||| |||| | ||||||||||||||||||| ||||||||||||||||
Sbjct 472 ATTATCTTCGGAACTGG-AGCCACACAATTGCTTGCAGCTTCTGTTCATGCCTTGTCCCA 530
Query 598 GACAAACTCATCAGT-ATCATCACCTGCAAGACTTCTGACTTCTATTCCATACTATGCTA 656
||||| |||||| | |||||| ||| |||||||| |||||||| |||||||||| ||
Sbjct 531 AACAAATTCATCA-TCATCATCTCCTTCAAGACTTGTGACTTCTGTTCCATACTACAATA 589
Query 657 TGTACAAGGACCAAGCAGAGTTTTTTGATTCAGCAC-ATCTCAAGTTTGAAGGAAATGCG 715
|| |||| |||||||||||||| ||| |||| || | ||||||||||||||||| |||||
Sbjct 590 TGAACAAAGACCAAGCAGAGTTCTTTAATTCTGC-CGATCTCAAGTTTGAAGGAGATGCG 648
Query 716 TCTGCGTGGAAGCA-GAGCGGA-CGCAATGATAATATCACACAAGTTATAGAGGTGGTGA 773
|| ||||||||| | |||| || |||||||||||||| ||||||||||||||| | ||||
Sbjct 649 TCCGCGTGGAAG-AGGAGC-GAGCGCAATGATAATATGACACAAGTTATAGAGATAGTGA 706
Query 774 CATCTCCGAATAATCCAGATGGGAA-ATTGAAAAGAGCGGTTCTTGATGGTCCTAATGTG 832
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 707 CATCTCCGAATAATCCAGATGGGAAGCTT-AAAAGAGCGGTTCTTGATGGTCCTAATGTC 765
Query 833 AAA-ACACTTCATGATTATGCTTATTACTGGCCTCATTTCTCACCTATTACACATCCAGT 891
||| ||| |||||||||||||||||||||||||| |||| ||||||||||||||||| ||
Sbjct 766 AAATACA-TTCATGATTATGCTTATTACTGGCCTTATTTTTCACCTATTACACATCCTGT 824
Query 892 TGATGAAGATTTGAGCCTGTTTAGTCTCTCCAAGACTACAGGTCATGCTGGTTCAAGATT 951
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 825 TGATGAAGATTTGAGCCTGTTTAGTCTCTCCAAGACTACAGGTCATGCTGGCTCAAGATT 884
Query 952 CGGGTGGGGATTGGTAAAGGACAAAGCTATTTATGAAAAAATGGATAGATTTATACGTT- 1010
|| |||| ||| ||||| ||||||||| |||||||||||||| | | || |||| ||
Sbjct 885 CGACTGGGCATTAGTAAAAGACAAAGCTGTTTATGAAAAAATGAAAACATATATA-ATTC 943
Query 1011 TAACTAGTATGGGAGTTTCTAAAGAAACACAGCTTCATG-TTCTTCAGTTGCTCAAAGTA 1069
||| || |||||||||||| ||||| ||||||||||||| || | |||||||| ||||||
Sbjct 944 TAAGTACTATGGGAGTTTCAAAAGACACACAGCTTCATGCTT-TGCAGTTGCTTAAAGTA 1002
Query 1070 GTAG-TTGGTGATGGAGGCAATGAGATATTCAGTTTTGGTTATGGAA-CTGTGAAGAAAA 1127
|| | |||| |||||||| |||| |||||||||||||||||||||| || |||| ||||
Sbjct 1003 GT-GATTGGCGATGGAGGGGATGAAATATTCAGTTTTGGTTATGGAACCT-TGAAAAAAA 1060
Query 1128 GATGGGAGACACTGAACAAGATCTTCTCCATGTCCACGCGTTTCTCGCTCCAGACAATCA 1187
||||||||| ||||||||||||| ||||||||||||||||| ||||||||||| ||||
Sbjct 1061 GATGGGAGATTTTGAACAAGATCTTTTCCATGTCCACGCGTTTTTCGCTCCAGACTATCA 1120
Query 1188 AACCTGAGTACTGCAACTATTTCAAGAAAGTTAGAGAGTTTACTCCTTCTTATGCATGGG 1247
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1121 AACCTCAGTATTGCAACTATTTCAAGAAAGTTAGAGAGTTTACTCCTTCTTATGCATGGG 1180
Query 1248 TGAAGTGTGAGAGACCAGAAGACACAAACTGCTATGAGATTTTCAGAGCGGCGAAGATAA 1307
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1181 TGAAGTGTGAGAGACCAGAAGACAAAAACTGCTATGAGATTTTCAGAGCGGTGAAGATAA 1240
Query 1308 CAGGACGCAATGGCAATGTGTTTGGATCAGAAGAAAGGTTTGTGCGATTGAGTCTCATCA 1367
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1241 CTGGACGCAATGGCAATGTGTTTGGATCAGAAGAAAGGTTTGTGCGATTGAGTCTCATCA 1300
Query 1368 GATCACAAGATGACTTTGATCAGCTTATTGCTATGTTGAAGAAGTTAGTTTACCATGAGG 1427
|||||||||| ||||||||||||||||||||||| ||||||||||| || | ||| |||
Sbjct 1301 GATCACAAGACGACTTTGATCAGCTTATTGCTATATTGAAGAAGTTTGTCT-CCA--AGG 1357
Query 1428 AAGATGT 1434
||| |||
Sbjct 1358 AAGCTGT 1364
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60068316365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5