BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G34120.2
Length=2010
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473564 jgi|Araly1|473564|fgenesh2_kg.1__3518__AT1G34120.2 3018 0.0
> Ahg473564 jgi|Araly1|473564|fgenesh2_kg.1__3518__AT1G34120.2
Length=1931
Score = 3018 bits (1634), Expect = 0.0
Identities = 1822/1914 (95%), Gaps = 7/1914 (0%)
Strand=Plus/Plus
Query 1 TCTTCCTCCTGCAACCTCTTCTTCCCTCTCTCAGTTTGATTTGACCGGAGTATATGGCGG 60
||||||||||||||||||||||| ||||||| ||| | |||||||||||| ||||||||
Sbjct 1 TCTTCCTCCTGCAACCTCTTCTT--CTCTCTCTGTTAGGTTTGACCGGAGTTTATGGCGG 58
Query 61 AAGTACGATCACG---ATCACGGAGAACGGAGAGCAATTGGGCTACAATATGCTGCTCAG 117
||||||||||||| ||||||| |||| ||||||||||||||||||||||| |||||||
Sbjct 59 AAGTACGATCACGATCATCACGGCGAACCGAGAGCAATTGGGCTACAATATGTTGCTCAG 118
Query 118 CTTTCTCGTGTCTCCAGCTCTACTGGGCACGTATTGTTCTCCGTAAATGGTTCAATGTTT 177
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 119 CTTTCTCATGTCTCCAGCTCTACTGGGCACGTCTTGTTCTCCGTAAATGGTTCAATGTTT 178
Query 178 CTGCTTCTGAATCAGATTATAGTGCTGATAGTGACGATGACTACGAAGATAGATCACAAG 237
|||| |||||||||||||||| |||||||||||||||||||||||||||||| | ||||
Sbjct 179 CTGCCACTGAATCAGATTATAGCGCTGATAGTGACGATGACTACGAAGATAGAGCCCAAG 238
Query 238 AATTTGATCCAATTAGCTCTGGAGTTACCAATCCTCGTGTTGATACTGACGGTAATGTGA 297
|||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 239 AATTTGATCCAAGTAGCTCTGGAGTTACCAATCCTCGTGCTGATATTGACGGTAATGTGA 298
Query 298 TATATAGGCCTAAGCTTAGAAGACGAAATTCTGAAACTTTCAGGATGCAGTATATAGATA 357
||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 299 TATATGGGCCTAAGCTTAGAAGACGAAATTCTGAAACTTTCAGGGTGCAGTATATGGATA 358
Query 358 CCAAAGCAATCAGAATCTGTGCTGGGACATGGAATGTTGGAGGGAGAGTTCCTTCATCTG 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CCAAAGCAATCAGAATCTGTGCTGGGACATGGAATGTTGGAGGGAGAGTTCCTTCATCTG 418
Query 418 ACTTGGATATTGATGGTTGGCTAGACACTCTTGAACCTGCTGACATTTATGTTCTTGGTC 477
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 419 ACTTGGATATTGATGGTTGGCTAGACACTGTTGAACCTGCTGACATTTATGTTCTTGGTC 478
Query 478 TTCAGGAAATCGTTCCCTTAAATGCTGGAAACATTTTTGGTATGGAGGATGACCAGCCTG 537
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TTCAGGAAATTGTTCCCTTAAATGCTGGAAACATTTTTGGTATGGAGGATGACCAGCCTG 538
Query 538 CTT-TGGAATGGGAGAACTTGATACGTGATGCCTTAAACCGAGTTCAACCTAGAAAGCTG 596
||| | |||||||||||||||||||| ||||| ||||||| ||||| ||| |||||||||
Sbjct 539 CTTCT-GAATGGGAGAACTTGATACGAGATGCTTTAAACCAAGTTCGACCAAGAAAGCTG 597
Query 597 AAGATTAAAAGTCACAGTGATCCCCCTTCTCCATCAAAGTTTAAGCAACCCGAAGAGGTT 656
|||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 598 AAGATTGTAAGTCACAGTGATCCCCCTTCTCCATCAAAATTTAAGCAATCCGAAGAGGTT 657
Query 657 CCTTATAGTGTAGAAGATATGTTTGTTGAAACCAGTCATGATGCTTGCGATGGAATTAGT 716
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 658 CCTTATAGTGTAGAAGATATGTTTGTTGAAACCAGTCATGATGCTTGCGATGCTATTAGT 717
Query 717 TCAATGGATAACAAACTCAACTCTGTTGAAAGCACGGACGTACCAATCGTAAGCGAAGAT 776
||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||
Sbjct 718 TCAATGGATAACAAACTCAACTCTGTTGAAATCACAGACATACCAATCGTAAGCGAAGAT 777
Query 777 TCACTTACTAATATAGACGTTTTGGGTTCTACCAATGACAATGCGTCTTGCTTACCAATA 836
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 778 TCACTTACTAATATAGACGTTTTGGGTTCTGCCAATGACAATGCGTCTTGCTTGCCAATA 837
Query 837 CAAGAATATCTACAGAGACAATTTTCAACACCAAATACGCCAGACCGCTCTCTGTCGATG 896
||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 838 CAAGAATATCTACAGAGGCAATTTTCATCACCAAATACGCCAGACCGCTCTCTTTCGATG 897
Query 897 CAGATTAATAGTGATTCCAAAAGGGAAGAAAGATTTAGTTACACTGAAAGGGTAGGTTTG 956
||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||
Sbjct 898 CAGATTAATAGTGATTCAAAAAGGGAAGAAAGATTTAGTTACACTAAAAGAGTAGGTTTG 957
Query 957 AGCTGGCCAGAGCCTCCATTAAGGCTCCTAAATCAATATGTTTCCGAAAGACGTGGTTCC 1016
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 958 AGCTGGCCAGAGCCTCCATTGAGGCTGCTAAATCAATATGTTTCCGAAAGACGTGGTTCC 1017
Query 1017 TTCAAGTCAGTGAATCTGACTATCACGAATCTGAGAAAACCATCGTATGTTCGGATTGTG 1076
||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1018 TTCAAGTCAGTGAATCTGACTATCACGCATCTGAGAAAACCATCGTATGTAAGGATTGTG 1077
Query 1077 AGCAAACAGATGGTTGGAGTGTTTCTCACCATTTGGGTTCGGAGGAACTTGCGCAAGCAC 1136
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1078 AGCAAACAGATGGTTGGAGTGTTTCTCACCATCTGGGTTCGGAGGAACTTGCGCAAGCAC 1137
Query 1137 ATAAGCAACCTTTGTGTGTCTACTGTTGGTGTTGGTATTATGGGCTACATTGGTAACAAG 1196
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 ATAAGCAACCTTTGTGTATCTACTGTTGGTGTTGGTATTATGGGCTACATTGGTAACAAG 1197
Query 1197 GGGTCTGTATCTGTGAGCATGTCAATCTATCAAACACCATTTTGTTTCTTGTGCACGCAT 1256
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1198 GGATCTGTATCTGTGAGCATGTCAATCTATCAAACACCATTTTGTTTCTTGTGCTCGCAT 1257
Query 1257 CTGTCATCTGGAGAAAAGGATACAGATCAAGAGAAAAGAAACGATGATGTACGTGAAATC 1316
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 CTGTCATCTGGGGAAAAGGATACAGATCAAGAGAAAAGAAACGATGATGTACGTGAAATT 1317
Query 1317 CACAGAAGAACGCAGTTTCTTCCTCATTCTTTAAATGCCAATGAGCTTCCAAGAAGCATC 1376
||||||||||||||||||||||| ||||||||||||||||| | | ||||||||||||||
Sbjct 1318 CACAGAAGAACGCAGTTTCTTCCGCATTCTTTAAATGCCAACGGGATTCCAAGAAGCATC 1377
Query 1377 TGTAATCATGAAAGAATAATCTGGCTGGGAGATCTGAACTATCGGATTAACTTGTCGTAT 1436
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 CGCGATCATGAAAGAATAATCTGGCTGGGAGATCTGAACTATCGGATTAACTTGTCGTAT 1437
Query 1437 GAGAAGACACATGAACTTATTGCAAGAAAGGAATGGCAAAGGTTGGTAGAGTACGACCAG 1496
|||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||
Sbjct 1438 GAGAAGACACATGAACTTATTGCAAGAAAGGAATGGCAGAGGTTGGTAGAGTATGATCAG 1497
Query 1497 CTTTCAAGAGAAATGACAAAAGGGAACCTATTCGAGGGATGGTCAGAGGGAACTTTAGAT 1556
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1498 CTTTCAAGAGAAATGACAAAAGGGAACGTATTCGAGGGATGGTCAGAGGGAACTTTAGAT 1557
Query 1557 TTTGCACCAACATATAAATACGAAATCGATTCAGAAAATTACATCGGAGATGACCCGGAA 1616
||| |||||||||| |||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 1558 TTTCCACCAACATACAAATACGAAATCAATTCAGAAAACTACATCGGAGATGACCCGGAA 1617
Query 1617 TCCGGGAAACGTAGACCGGCCTGGTGTGACCGCATCATTTGGAACGGAAAGGGAATGAAG 1676
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1618 TCCGGGAAACGTAGACCAGCCTGGTGTGACCGCATCATTTGGAATGGAAAGGGAATGAAG 1677
Query 1677 CTCTTCAATTACAGAAGAAACGAGATTAAACTATCGGATCACCGGCCTGTCACAGCCACG 1736
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 CTTTTTAATTACAGAAGAAACGAGATTAAACTATCGGATCACCGGCCTGTCACAGCCACG 1737
Query 1737 TTCTTGGCCGAGGTTGAGGTTTTGTCTCCACGGAAACTTCAACATGCGCTTACACTTACA 1796
||||||||| |||| |||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1738 TTCTTGGCCAAGGTCGAGGTTTTGTCTCCACGGAAACTTCAGCATGCGCTTACACTCACA 1797
Query 1797 TATGCTGAGATTCAAGGCCTTGACGCCTAAACAACCACTTCCGTCAGATCCCATTTGTGT 1856
||||| ||||||||||||||||||||||||| | || |||| ||||||||||||||||||
Sbjct 1798 TATGCCGAGATTCAAGGCCTTGACGCCTAAATACCCTCTTCTGTCAGATCCCATTTGTGT 1857
Query 1857 ATAGTAATTTAACGATTTGTATGCCCTTCATGTATAATAGTGTTCACGTACACA 1910
||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 1858 ATAGTAATTTAACAATTTATATGCCCTTCATGTATAATAGTGTTCACGTACACA 1911
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75571046080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5