BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G34245.1 Length=608 Score E Sequences producing significant alignments: (Bits) Value Ahg922535 jgi|Araly1|922535|scaffold_103816.1 649 0.0 Ahg922544 jgi|Araly1|922544|scaffold_103825.1 318 2e-86 Ahg922543 jgi|Araly1|922543|scaffold_103824.1 272 2e-72 > Ahg922535 jgi|Araly1|922535|scaffold_103816.1 Length=404 Score = 649 bits (351), Expect = 0.0 Identities = 383/399 (96%), Gaps = 0/399 (0%) Strand=Plus/Plus Query 108 aaaaaGATTATAAACATGACGAAGTTTGTACGCAAGTATATGTTTTGCCTCGTCCTAGTC 167 ||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 6 AAAAATATTAAAAACATGACGAAGTTTGTACGCAAGTATATGTTTTGCATCGTCCTAGTC 65 Query 168 TTCGCCGCGTGTTCTTTGGTCGTTAACTCCATTCGCACGCCGCCACTAAAAAACACGGTC 227 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 66 TTCGCCGCGTGTTCTTTGGTCGTTAACTCCATTCGCACGCCGCCACTAAAAATCACGGTC 125 Query 228 AATGGCGGAGAAAAGAAAAACGCCGATATAGAACAAGCTCAAACGCACCACAAGAAGGAA 287 ||||||||||||||||||||| || |||| ||||||||||||||||||||| |||||||| Sbjct 126 AATGGCGGAGAAAAGAAAAACTCCCATATGGAACAAGCTCAAACGCACCACGAGAAGGAA 185 Query 288 ATAAGCAAAAACGGAGGGGTAGAAATGGAAATGTACCCAACAGGATCAAGCTTACCGGAT 347 ||| | ||||| |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 186 ATAGGGAAAAAAGGAGGGGTAGAAATGGAAATGTACCCGACAGGATCAAGCTTACCGGAT 245 Query 348 TGTTCATACGCGTGTGGCGCATGTTCGCCGTGTAAACGTGTGATGATTAGTTTCGAATGC 407 ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| Sbjct 246 TGTTCATACGCGTGTGGCGCATGCTCGCCGTGTAAACGTGTGATGATTAGTTTCCAATGC 305 Query 408 TCAGTCGCCGAATCATGTAGCGTCATCTACAGATGCACGTGCAGAGGGAGATACTATCAC 467 |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct 306 TCAGTCGCCGAATCATGTAGCGTCATTTACAGATGCACGTGCAGAGGAAGATACTATCAC 365 Query 468 GTGCCATCTAGAGCTTGAATTGAATCTCCGCCGTTTAtt 506 ||||||||||||||||||||||||||||||||||||||| Sbjct 366 GTGCCATCTAGAGCTTGAATTGAATCTCCGCCGTTTATT 404 > Ahg922544 jgi|Araly1|922544|scaffold_103825.1 Length=211 Score = 318 bits (172), Expect = 2e-86 Identities = 195/206 (95%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 294 AAAAACGGAGGGGTAGAAATGGAAATGTACCCAACAGGATCAAGCTTACCGGATTGTTCA 353 ||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||| Sbjct 7 AAAAA-AGAGGGGTATAAATGGAAATGTACCCAATAGGATCAAGCTTACCGGATTGTTCA 65 Query 354 TACGCGTGTGGCGCATGTTCGCCGTGTAAACGTGTGATGATTAGTTTCGAATGCTCAGTC 413 |||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||| Sbjct 66 TACGCGTGTGGCGCATATTCGCCGTGTAAACGTATGATGATTAGTTTCCAATGCTCAGTC 125 Query 414 GCCGAATCATGTAGCG-TCATCTACAGATGCACGTGCAGAGGGAGATACTATCACGTGCC 472 |||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||| Sbjct 126 GCCGAATCATGTAGCGGTCATTTACAGATGCACGTGCAGAGGAAGATACTATCACGTGCC 185 Query 473 ATCTAGAGCTTGAATTGAATCTCCGC 498 ||||||| |||||||||||||||||| Sbjct 186 ATCTAGAACTTGAATTGAATCTCCGC 211 > Ahg922543 jgi|Araly1|922543|scaffold_103824.1 Length=208 Score = 272 bits (147), Expect = 2e-72 Identities = 170/180 (94%), Gaps = 6/180 (3%) Strand=Plus/Plus Query 105 aaaaaaaaGATTATAAA-CATGACGAAGTTTGTACGCAAGTAT-ATGTTTTGCCTCGTCC 162 ||||||| ||||| ||| ||||||||||||||||||||||| | |||||||||||||||| Sbjct 3 AAAAAAAGGATTA-AAACCATGACGAAGTTTGTACGCAAGT-TCATGTTTTGCCTCGTCC 60 Query 163 TAGTCTTCGCCGCGTGTTCTTTGGTCGTTAACTCCATTCGCACGCCGCCACTAAAAAACA 222 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 61 TAGTCTTCGCCGCGTGTTCTTTGGTCGTTAACTCCATTCGCACGCCGCCACTAAAAATCA 120 Query 223 CGGTCAATGGCGGAGAAAAGAAAAACGCCGATATAGAACAAGCTCAAAC-GCACCACAAG 281 |||||||||||||| ||||||||||||||||| |||||||||||||||| | |||||||| Sbjct 121 CGGTCAATGGCGGACAAAAGAAAAACGCCGATGTAGAACAAGCTCAAACCG-ACCACAAG 179 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22225660611 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5