BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G34550.1 Length=2600 Score E Sequences producing significant alignments: (Bits) Value Ahg922568 jgi|Araly1|922568|scaffold_103849.1 3116 0.0 Ahg942741 jgi|Araly1|942741|scaffold_603285.1 1260 0.0 Ahg313952 jgi|Araly1|313952|fgenesh1_pm.C_scaffold_1002732 137 3e-31 Ahg891202 jgi|Araly1|891202|Al_scaffold_0007_3188 119 1e-25 > Ahg922568 jgi|Araly1|922568|scaffold_103849.1 Length=1981 Score = 3116 bits (1687), Expect = 0.0 Identities = 1898/1993 (95%), Gaps = 41/1993 (2%) Strand=Plus/Plus Query 259 CTCATCGACGACGACAATGCTAAAATGGCTCAATTTAGACAATCGGGAACAGATAGATTT 318 ||||||| |||||||||||||||||||||||||||||||||||| || || |||||| Sbjct 3 CTCATCGTCGACGACAATGCTAAAATGGCTCAATTTAGACAATC-GG---AG--AGATTT 56 Query 319 AGTGTTCGCGGCAACGGCGGAGGAGCTTCTTCTGATCACGTAACGATCGGGATCCGAAAC 378 ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 57 AGTGTTCGCGG---CGGCGGAGCAGCTTCTTCTGATCACGTAACGATCGGGATCCGAAAC 113 Query 379 GGCGTCGGTGGAGCTACTAAAGGTAACAACAAC-A--GGTGGCGAAGATCCGTGAGAGCT 435 ||||||||||||| ||||||||||||||||| | |||||||| |||||||||||||| Sbjct 114 GGCGTCGGTGGAG---CTAAAGGTAACAACAACAACCGGTGGCGACGATCCGTGAGAGCT 170 Query 436 GATAAGATTCGTCGACTTGGAATCGGTTCTGTTGTGTTTGTTCTTTGCTTTGTGCTTCTT 495 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 171 GATAAGATTCGTCGACTTGGAATCGGTTCTGTTGTGTTTGTTCTTTGCTTTGTGCTTGTT 230 Query 496 GTTACTGTTCTCGCTTACTGTTATATCTCTGGGTTTACTTATAATAGCTACGATGATAAA 555 |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 231 GTTACTCTTCTCGCTTACTATTATATCTCTGGGTTTACTTATAATAGCTACGATGATAAA 290 Query 556 GGATTTGTTGATTCATATGAGGGTGATTTTTTGACGAATGTGACTAGATTAGATCCTTCG 615 |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| Sbjct 291 GGATTTGTTGATTCATATGAAGGTGATTTTTTGACGAATGTGACTAGAATAGATCCTTCG 350 Query 616 AAAGTGCTTGAGTTTGGTCAAGGTTCAGTGATTCATGGACGAGATTCGAGGTATTGGGAT 675 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 351 AAAGTGCTTGAGTTTGGTCAAGGTTCAGTGATTCATGGACGAGATTCGAGGTATTGGGAT 410 Query 676 AAAGATGATAGAAGAAGAGATGATGATTATAATGAGGATGAAGTGAAAAAGGATGTACAA 735 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 411 AAAGATGATAGAAGAAGAGATGATGATTATAATGAGGATGAAGTGAAAAAGGATGT---A 467 Query 736 CAAGTTCATAATCCTGTGAAGGGGATTGGTTTGTATAATGAAGCTGGAAGGAATGAGTTG 795 |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 468 CAAGTTCACAATCCTGTGAAAGGGATTGGTTTGTATAATGAAGCTGGAAGGAATGAGTTA 527 Query 796 AAGATGTATGAAGCTGAGTATAAAGCTACGCTTGGGAAAGGTGGTCATGAGA-AAA---- 850 ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| Sbjct 528 AAGATGTATGAAGCTGAGTATCAAGCTACGCTTGGGAAAGGTGGTCATGAGAGAAACGGT 587 Query 851 ----A-C--AATGAGGGAGTTGATAGGGATCGTGAGgatgatgatgcgattgattctcat 903 | | ||||||| ||||||| |||||||||||||||||||| ||||||||||||| Sbjct 588 GTGCAGCGTCATGAGGGTGTTGATATGGATCGTGAGGATGATGATGGGATTGATTCTCAT 647 Query 904 gatggggatgaatatgttgattctgggcatgaggatgatAATGAAGAGGTGCATAAAGAG 963 |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| Sbjct 648 GATGGGGATGAATATGTTGATTCTGGGCATGAGGATGAGAATGAAGAGGCGCATAAAGAG 707 Query 964 -A--------AGGTTGTTCATTTGGTGACCAAGCAAGAGAATGTGGACAAGGATGATGGA 1014 | ||||||||||| ||||||| |||||||||||| |||| |||||||||||| Sbjct 708 AAGGTTGGTGAGGTTGTTCATATGGTGACTAAGCAAGAGAATATGGAGAAGGATGATGGA 767 Query 1015 GGTGTTTCAAAAATGTCACTTGGGGATTCTTCTCTTGTTAGTAAGGGTGGTAAGTCTGGG 1074 ||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||| Sbjct 768 GGTATTTCAAAAAGGTCACTTGGGGATTCTTATCTTGTTAGTAAGGGTGGTAAGTCCGGG 827 Query 1075 AAAACATCACGATCTGATACTAAA-AGAAGAGGTCGTCGCAGATCTTCAGGTTCATGTGA 1133 ||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||| Sbjct 828 AAAACATCACGGTCTGATAC-AAAGAGAAGAGGTCGTCGCAGATCTTCAGGTTCATGTGA 886 Query 1134 AATGAAGCTATTGAATTCTAGTCAACCAATAGTGGAGCCCTTGAATACTCGAAAATCTGC 1193 |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| Sbjct 887 AATGAAGCTATTGAATTCGAGTCAACAAATAGTGGAGCCCTTGAATACTCGAAAATCTGC 946 Query 1194 TAGATTTTCTTTACAGTACATAGAGAAGGAAGATAAGCCTGATGAAGAAGAACAGTGGGA 1253 |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 947 TAGATTCTCTTTACAGTACATAGAGAAGGAAGATAAGCCTGATGGAGAAGAACAGTGGGA 1006 Query 1254 GCCTAGATTTGCAGGTCATCAGAGTTTACAGGAGCGAGAAGATTCCTTCGTGGCTCAAGA 1313 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1007 GCCTAGATTTGCAGGTCATCAGAGTTTACAGGAGCGAGAAGATTCCTTCGTGGCTGAAGA 1066 Query 1314 CAAGAAAATTCATTGCGGCTTTGTCAAAGGTCCCAAAGGATCTTCAAGCACTGGGTTTGA 1373 ||||||||||||||| |||||||||||||| |||||||||||| |||||||||| ||||| Sbjct 1067 CAAGAAAATTCATTGTGGCTTTGTCAAAGGCCCCAAAGGATCTCCAAGCACTGGATTTGA 1126 Query 1374 CCTGACAGAAGATGATACTAATTATATCAGTAGATGCCACATCGCTGTTAGCTCATGCAT 1433 |||||||||||||||||||||||||||||||||||||||||||||||| | |||||| || Sbjct 1127 CCTGACAGAAGATGATACTAATTATATCAGTAGATGCCACATCGCTGTGATCTCATGTAT 1186 Query 1434 CTTTGGCAATTCTGATCGTTTGAGGCCTCCTGCCAACAAAATGATAAGTCGGTTGTCGAG 1493 |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| || Sbjct 1187 CTTTGGCAATTCTGATCGCTTGAGGCCTCCTGCCAACAAAATGATAAGTAGGTTGTCAAG 1246 Query 1494 AAAAAATGTATGCTTCATTGTGTTCGTGGACGAGATTACCATGCAAACACTTTCTGCAGA 1553 ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1247 AAAAAATGTGTGCTTCATTGTGTTTGTGGACGAGATTACCATGCAAACACTTTCTGCAGA 1306 Query 1554 AGGACATGCCCCAGACAGAGCAGGATTCATTGGTCTGTGGAAGTTGGTTGTCGTGAAGAA 1613 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1307 AGGACATGCCCCAGACAGAGCAGGATTCATTGGTCTGTGGAAGTTGGTTGTCGTGAAGAA 1366 Query 1614 TCTTCCTTACGCAGATATGCGGAGGGTAGGAAAAATACCAAAAATGTTGCCACACCGACT 1673 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1367 TCTTCCTTATGCAGATATGCGGAGGGTAGGAAAAATACCAAAAATGTTGCCACACCGACT 1426 Query 1674 TTTCCCATCAGCAAGGTACTCAATCTGGTTGGACAGCAAGTTACGACTTCAGTTGGACCC 1733 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1427 TTTCCCATCAGCAAGGTACTCAATCTGGTTGGACAGCAAGTTACGACTTCAGTTGGACCC 1486 Query 1734 ACTACTCATTCTGGAGTACTTCCTATGGCGTAAAGGTCACGAGTATGCTATATCCAATCA 1793 ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1487 ACTGCTCATTCTGGAGTACTTTCTATGGCGTAAAGGTCACGAGTATGCTATATCCAATCA 1546 Query 1794 CTATGACCGTCATTGTTTATGGGAAGAGGTTGCACAAAACAAGAAGCTGAACAAGTATAA 1853 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1547 CTATGACCGTCATTGTTTATGGGAAGAGGTTGCACAAAACAAGAAGCTGAACAAGTATAA 1606 Query 1854 CCATACTGTTATTAATCAACAGTTTCAGTTTTACAAGGCTGATGGGCTGACCAGATTCAA 1913 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1607 CCATACTGTTATTAATCAACAGTTTCAGTTTTACAAGGCTGATGGGCTAACCAGATTCAA 1666 Query 1914 TGCTTCGGATCCGTTCAAGCTTCTTCCTAGCAATGTTCCAGAGGGGTCTTTCATAGTACG 1973 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1667 CGCGTCGGATCCGTTCAAGCTTCTTCCTAGCAATGTTCCAGAGGGGTCTTTCATAGTACG 1726 Query 1974 AGCTCATACTCCCATGTCGAACCTATTCTCATGTCTTTGGTTCAATGAAGTGGAACGCTT 2033 ||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||| Sbjct 1727 AGCTCATACTCCCATGTCGAATCTATTCTCTTGTCTTTGGTTCAATGAAGTAGAACGCTT 1786 Query 2034 CACTCCCCGGGACCAGCTGAGCTTTGCCTATACTTACCAGAAACTAAGAAGGATGAATCC 2093 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1787 CACTCCCCGGGACCAGCTGAGCTTTGCCTATACTTACCAGAAACTAAGAAGGATGAATCC 1846 Query 2094 TGATAAACCATTTAATCTTCACATGTTCAAGGACTGTGAGAGAAGAAAAATTGCAAAGTT 2153 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1847 TGATAAACCATTTAATCTTCACATGTTCAAGGACTGTGAGAGAAGAAAGATTGCAAAGTT 1906 Query 2154 GTTCCGTCACAGATCAGACGAGAAGCGAAACCTTATACAAGCAGCAATACAATAAACAAC 2213 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1907 GTTCCGTCACAGATCAGACGAGAAGCGAAACCTTATACAAGCAGCAATACAATAAACAAC 1966 Query 2214 TCTATGTTGTACC 2226 ||||||||||||| Sbjct 1967 TCTATGTTGTACC 1979 > Ahg942741 jgi|Araly1|942741|scaffold_603285.1 Length=2138 Score = 1260 bits (682), Expect = 0.0 Identities = 1032/1202 (86%), Gaps = 20/1202 (2%) Strand=Plus/Plus Query 1020 TTCAAAAATGTCACTTGGGGATTCTTCTCTTGTTAGTAAGGGTGGTAAGTCTGGGAAAAC 1079 |||||||| ||||| |||| | |||||||||||| || |||||||||||| |||||||| Sbjct 923 TTCAAAAAGGTCACGTGGGAAGTCTTCTCTTGTTGGTGCGGGTGGTAAGTCCGGGAAAAC 982 Query 1080 ATCACGATCTGATACTAAAAGA--AGAG-GTCGTCGCAGATCTTCA-G-GT-TCATGTGA 1133 ||||| | ||||||| |||||| || | | ||| ||||| |||| | || || ||||| Sbjct 983 ATCACAAACTGATACAAAAAGACGAGCGCGAAGTCACAGATTTTCAGGCGTATCTTGTGA 1042 Query 1134 AATGAAGCTATTGAATTCTAGTCAACCAATAGTGGAGCCCTTGAATACTCGAAAA-TCTG 1192 |||||||| |||||||| ||||||| |||| ||||| ||||| |||| |||| | || Sbjct 1043 GATGAAGCTGTTGAATTCCAGTCAACAAATAAAAGAGCCTTTGAAAACTC-AAAATTTTG 1101 Query 1193 CTAG-ATTTTCTTTACAGTACATAGAGAAGGAAGATAAGCCTGATGAAGAAGAACAGTGG 1251 || | | || ||||| |||||||||| ||| ||||| ||||||| ||||||||||||| Sbjct 1102 CT-GCACCCTCCTTACAATACATAGAGATGGAGGATAAACCTGATGGAGAAGAACAGTGG 1160 Query 1252 GAGCCTAGATTTGCAGGTCATCAGAGTTTACAGGAGCGAGAAGATTCCTTCGTGGCT-CA 1310 ||||||| |||||||||||| |||||||||||||| |||||||| || ||| ||| | || Sbjct 1161 GAGCCTAAATTTGCAGGTCACCAGAGTTTACAGGAACGAGAAGACTCTTTCTTGG-TCCA 1219 Query 1311 AGA-CAAGAAAATTCATTGCGGCTTTGTCAAAGGTCCC-AAAGGATCT-TCAAGCACTGG 1367 ||| | ||||||| ||||| |||||||||||| | ||| |||||| | |||||||||| Sbjct 1220 AGAGC-AGAAAATCCATTGTGGCTTTGTCAAA-GCCCCTGAAGGAT-TGCCAAGCACTGG 1276 Query 1368 GTTTGACCTGACAGAAGATGATACTAATTATATCAGTAGATGCCACATCGCTGTTAGCTC 1427 ||||||||||||||||||||| |||| |||||||||||||| ||||||||||| | || Sbjct 1277 ATTTGACCTGACAGAAGATGATGCTAACTATATCAGTAGATGTCACATCGCTGTGATATC 1336 Query 1428 ATGCATCTTTGGCAATTCTGATCGTTTGAGGCCTCCTGCCAACAAAATGATAAGTCGGTT 1487 || || ||||| ||||||||||| ||||||| |||||| || |||||| ||||| | || Sbjct 1337 CTGTATTTTTGGAAATTCTGATCGCTTGAGGCATCCTGCTAATAAAATGGTAAGTAGTTT 1396 Query 1488 GTCGAGAAAAAATGTATGCTTCATTGTGTTCGTGGACGAGATTACCATGCAAACACTTTC 1547 ||| |||||| |||| |||||| ||||||| ||||||||||||||||||||||||||||| Sbjct 1397 GTCAAGAAAAGATGTTTGCTTCGTTGTGTTTGTGGACGAGATTACCATGCAAACACTTTC 1456 Query 1548 TGCAGAAGGACATGCCCCAGACAGAGCAGGATTCATTGGTCTGTGGAAGTTGGTTGTCGT 1607 ||| ||||| || | || ||| |||| |||||| ||||||||||||| |||||||| || Sbjct 1457 TGCCGAAGGCCAAGTACCTGACGGAGCTGGATTCGTTGGTCTGTGGAAATTGGTTGTGGT 1516 Query 1608 GAAGAATCTTCCTTACGCAGATATGCGGAGGGTAGGAAAAATACCAAAAATGTTGCCACA 1667 || ||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||| Sbjct 1517 GAGGAATCTTCCTTACGCAGATATGCGGAGGGTAGGGAAAATACCAAAACTGTTACCACA 1576 Query 1668 CCGACTTTTCCCATCAGCAAGGTACTCAATCTGGTTGGACAGCAAGTTACGACTTCAGTT 1727 | |||||||||| || |||||||||||||||||||| |||||||||||||| || ||||| Sbjct 1577 CAGACTTTTCCCTTCGGCAAGGTACTCAATCTGGTTAGACAGCAAGTTACGTCTCCAGTT 1636 Query 1728 GGACCCACTACTCATTCTGGAGTACTTCCTATGGCGTAAAGGTCACGAGTATGCTATATC 1787 |||||| ||| |||| ||||| ||||| || |||||| |||| |||||||||||||| || Sbjct 1637 GGACCCCCTAGTCATACTGGAATACTTTCTGTGGCGTGAAGGGCACGAGTATGCTATCTC 1696 Query 1788 CAATCACTATGACCGTCATTGTTTATGGGAAGAGGTTGCACAAAACAAGAAGCTGAACAA 1847 ||| || || ||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1697 CAACCATTACGACCGCCATTGCCTATGGGAAGAGGTTGCACAAAACAAGAAGCTGAACAA 1756 Query 1848 GTATAACCATACTGTTATTAATCAACAGTTTCAGTTTTACAAGGCTGATGGGCTGACCAG 1907 ||| || || ||||| ||| |||| || ||| |||||||| ||||||| |||||||| || Sbjct 1757 GTACAATCACACTGTCATTGATCAGCAATTTGAGTTTTACCAGGCTGACGGGCTGACGAG 1816 Query 1908 ATTCAATGCTTCGGATCCGTTCAAGCTTCTTCCTAGCAATGTTCCAGAGGGGTCTTTCAT 1967 |||||||||||| ||||| |||||||||||| |||||||||||||| ||||||||||| Sbjct 1817 ATTCAATGCTTCAGATCCCAACAAGCTTCTTCCCAGCAATGTTCCAGAAGGGTCTTTCAT 1876 Query 1968 AGTACGAGCTCATACTCCCATGTCGAACCTATTCTCATGTCTTTGGTTCAATGAAGTGGA 2027 ||||||| ||||| |||||||| ||||||||||| |||||||||||||| ||||| || Sbjct 1877 TGTACGAGAACATACCCCCATGTCAAACCTATTCTCTTGTCTTTGGTTCAACGAAGTTGA 1936 Query 2028 ACGCTTCACTCCCCGGGACCAGCTGAGCTTTGCCTATACTTACCAGAAACTAAGAAGGAT 2087 |||||||||||||| || |||||||||||||| || || ||||||||| ||| |||||| Sbjct 1937 GCGCTTCACTCCCCGAGATCAGCTGAGCTTTGCATACACCTACCAGAAATTAACAAGGAT 1996 Query 2088 GAATCCTGATAAACCATTTAATCTTCACATGTTCAAGGACTGTGAGAGAAGAAAAATTGC 2147 ||||||||| | |||||||||||||||||||||||||| || ||||| |||||||| | Sbjct 1997 GAATCCTGACACTCCATTTAATCTTCACATGTTCAAGGATTGCGAGAGGAGAAAAATCAC 2056 Query 2148 -AAAGTTGTTCCGTCACAGATCAGACGAGAAGCGAAACCTTATACAAGCAGCAATACAAT 2206 ||| ||||| |||||||||||||| |||||||||||||||||||||||||||| ||||| Sbjct 2057 CAAA-TTGTTTCGTCACAGATCAGAAGAGAAGCGAAACCTTATACAAGCAGCAACACAAT 2115 Query 2207 AA 2208 || Sbjct 2116 AA 2117 > Ahg313952 jgi|Araly1|313952|fgenesh1_pm.C_scaffold_1002732 Length=621 Score = 137 bits (74), Expect = 3e-31 Identities = 84/89 (94%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 164 TTTCTGGTTCGGGTGTTAATGCCACAAGTGACTGGGGTAGCTATGTTACTGAGCTAAGCT 223 |||| |||||||||||||||||||||| |||| ||| |||||||||||||||||||||| Sbjct 515 TTTCCGGTTCGGGTGTTAATGCCACAACCGACTTGGGAAGCTATGTTACTGAGCTAAGCT 574 Query 224 CTCTTCTTGAAAAATCTCCTAAGATTGAA 252 ||||||||||||||||||||||||||||| Sbjct 575 CTCTTCTTGAAAAATCTCCTAAGATTGAA 603 > Ahg891202 jgi|Araly1|891202|Al_scaffold_0007_3188 Length=675 Score = 119 bits (64), Expect = 1e-25 Identities = 82/90 (91%), Gaps = 3/90 (3%) Strand=Plus/Plus Query 165 TTCTGGTTCGGGTGTTAATGC--C-ACAAGTGACTGGGGTAGCTATGTTACTGAGCTAAG 221 ||||||||||||||||||||| | |||| |||| ||| |||||||||||||||||||| Sbjct 567 TTCTGGTTCGGGTGTTAATGCTGCCACAACCGACTTGGGAAGCTATGTTACTGAGCTAAG 626 Query 222 CTCTCTTCTTGAAAAATCTCCTAAGATTGA 251 |||||||||||| ||||||||||||||||| Sbjct 627 CTCTCTTCTTGACAAATCTCCTAAGATTGA 656 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 98044290630 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5