BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G34550.1
Length=2600
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922568 jgi|Araly1|922568|scaffold_103849.1 3116 0.0
Ahg942741 jgi|Araly1|942741|scaffold_603285.1 1260 0.0
Ahg313952 jgi|Araly1|313952|fgenesh1_pm.C_scaffold_1002732 137 3e-31
Ahg891202 jgi|Araly1|891202|Al_scaffold_0007_3188 119 1e-25
> Ahg922568 jgi|Araly1|922568|scaffold_103849.1
Length=1981
Score = 3116 bits (1687), Expect = 0.0
Identities = 1898/1993 (95%), Gaps = 41/1993 (2%)
Strand=Plus/Plus
Query 259 CTCATCGACGACGACAATGCTAAAATGGCTCAATTTAGACAATCGGGAACAGATAGATTT 318
||||||| |||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 3 CTCATCGTCGACGACAATGCTAAAATGGCTCAATTTAGACAATC-GG---AG--AGATTT 56
Query 319 AGTGTTCGCGGCAACGGCGGAGGAGCTTCTTCTGATCACGTAACGATCGGGATCCGAAAC 378
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 57 AGTGTTCGCGG---CGGCGGAGCAGCTTCTTCTGATCACGTAACGATCGGGATCCGAAAC 113
Query 379 GGCGTCGGTGGAGCTACTAAAGGTAACAACAAC-A--GGTGGCGAAGATCCGTGAGAGCT 435
||||||||||||| ||||||||||||||||| | |||||||| ||||||||||||||
Sbjct 114 GGCGTCGGTGGAG---CTAAAGGTAACAACAACAACCGGTGGCGACGATCCGTGAGAGCT 170
Query 436 GATAAGATTCGTCGACTTGGAATCGGTTCTGTTGTGTTTGTTCTTTGCTTTGTGCTTCTT 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 171 GATAAGATTCGTCGACTTGGAATCGGTTCTGTTGTGTTTGTTCTTTGCTTTGTGCTTGTT 230
Query 496 GTTACTGTTCTCGCTTACTGTTATATCTCTGGGTTTACTTATAATAGCTACGATGATAAA 555
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 231 GTTACTCTTCTCGCTTACTATTATATCTCTGGGTTTACTTATAATAGCTACGATGATAAA 290
Query 556 GGATTTGTTGATTCATATGAGGGTGATTTTTTGACGAATGTGACTAGATTAGATCCTTCG 615
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 291 GGATTTGTTGATTCATATGAAGGTGATTTTTTGACGAATGTGACTAGAATAGATCCTTCG 350
Query 616 AAAGTGCTTGAGTTTGGTCAAGGTTCAGTGATTCATGGACGAGATTCGAGGTATTGGGAT 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 AAAGTGCTTGAGTTTGGTCAAGGTTCAGTGATTCATGGACGAGATTCGAGGTATTGGGAT 410
Query 676 AAAGATGATAGAAGAAGAGATGATGATTATAATGAGGATGAAGTGAAAAAGGATGTACAA 735
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 411 AAAGATGATAGAAGAAGAGATGATGATTATAATGAGGATGAAGTGAAAAAGGATGT---A 467
Query 736 CAAGTTCATAATCCTGTGAAGGGGATTGGTTTGTATAATGAAGCTGGAAGGAATGAGTTG 795
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 468 CAAGTTCACAATCCTGTGAAAGGGATTGGTTTGTATAATGAAGCTGGAAGGAATGAGTTA 527
Query 796 AAGATGTATGAAGCTGAGTATAAAGCTACGCTTGGGAAAGGTGGTCATGAGA-AAA---- 850
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 528 AAGATGTATGAAGCTGAGTATCAAGCTACGCTTGGGAAAGGTGGTCATGAGAGAAACGGT 587
Query 851 ----A-C--AATGAGGGAGTTGATAGGGATCGTGAGgatgatgatgcgattgattctcat 903
| | ||||||| ||||||| |||||||||||||||||||| |||||||||||||
Sbjct 588 GTGCAGCGTCATGAGGGTGTTGATATGGATCGTGAGGATGATGATGGGATTGATTCTCAT 647
Query 904 gatggggatgaatatgttgattctgggcatgaggatgatAATGAAGAGGTGCATAAAGAG 963
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 648 GATGGGGATGAATATGTTGATTCTGGGCATGAGGATGAGAATGAAGAGGCGCATAAAGAG 707
Query 964 -A--------AGGTTGTTCATTTGGTGACCAAGCAAGAGAATGTGGACAAGGATGATGGA 1014
| ||||||||||| ||||||| |||||||||||| |||| ||||||||||||
Sbjct 708 AAGGTTGGTGAGGTTGTTCATATGGTGACTAAGCAAGAGAATATGGAGAAGGATGATGGA 767
Query 1015 GGTGTTTCAAAAATGTCACTTGGGGATTCTTCTCTTGTTAGTAAGGGTGGTAAGTCTGGG 1074
||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 768 GGTATTTCAAAAAGGTCACTTGGGGATTCTTATCTTGTTAGTAAGGGTGGTAAGTCCGGG 827
Query 1075 AAAACATCACGATCTGATACTAAA-AGAAGAGGTCGTCGCAGATCTTCAGGTTCATGTGA 1133
||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 828 AAAACATCACGGTCTGATAC-AAAGAGAAGAGGTCGTCGCAGATCTTCAGGTTCATGTGA 886
Query 1134 AATGAAGCTATTGAATTCTAGTCAACCAATAGTGGAGCCCTTGAATACTCGAAAATCTGC 1193
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 887 AATGAAGCTATTGAATTCGAGTCAACAAATAGTGGAGCCCTTGAATACTCGAAAATCTGC 946
Query 1194 TAGATTTTCTTTACAGTACATAGAGAAGGAAGATAAGCCTGATGAAGAAGAACAGTGGGA 1253
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 947 TAGATTCTCTTTACAGTACATAGAGAAGGAAGATAAGCCTGATGGAGAAGAACAGTGGGA 1006
Query 1254 GCCTAGATTTGCAGGTCATCAGAGTTTACAGGAGCGAGAAGATTCCTTCGTGGCTCAAGA 1313
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1007 GCCTAGATTTGCAGGTCATCAGAGTTTACAGGAGCGAGAAGATTCCTTCGTGGCTGAAGA 1066
Query 1314 CAAGAAAATTCATTGCGGCTTTGTCAAAGGTCCCAAAGGATCTTCAAGCACTGGGTTTGA 1373
||||||||||||||| |||||||||||||| |||||||||||| |||||||||| |||||
Sbjct 1067 CAAGAAAATTCATTGTGGCTTTGTCAAAGGCCCCAAAGGATCTCCAAGCACTGGATTTGA 1126
Query 1374 CCTGACAGAAGATGATACTAATTATATCAGTAGATGCCACATCGCTGTTAGCTCATGCAT 1433
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||
Sbjct 1127 CCTGACAGAAGATGATACTAATTATATCAGTAGATGCCACATCGCTGTGATCTCATGTAT 1186
Query 1434 CTTTGGCAATTCTGATCGTTTGAGGCCTCCTGCCAACAAAATGATAAGTCGGTTGTCGAG 1493
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||
Sbjct 1187 CTTTGGCAATTCTGATCGCTTGAGGCCTCCTGCCAACAAAATGATAAGTAGGTTGTCAAG 1246
Query 1494 AAAAAATGTATGCTTCATTGTGTTCGTGGACGAGATTACCATGCAAACACTTTCTGCAGA 1553
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1247 AAAAAATGTGTGCTTCATTGTGTTTGTGGACGAGATTACCATGCAAACACTTTCTGCAGA 1306
Query 1554 AGGACATGCCCCAGACAGAGCAGGATTCATTGGTCTGTGGAAGTTGGTTGTCGTGAAGAA 1613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1307 AGGACATGCCCCAGACAGAGCAGGATTCATTGGTCTGTGGAAGTTGGTTGTCGTGAAGAA 1366
Query 1614 TCTTCCTTACGCAGATATGCGGAGGGTAGGAAAAATACCAAAAATGTTGCCACACCGACT 1673
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1367 TCTTCCTTATGCAGATATGCGGAGGGTAGGAAAAATACCAAAAATGTTGCCACACCGACT 1426
Query 1674 TTTCCCATCAGCAAGGTACTCAATCTGGTTGGACAGCAAGTTACGACTTCAGTTGGACCC 1733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1427 TTTCCCATCAGCAAGGTACTCAATCTGGTTGGACAGCAAGTTACGACTTCAGTTGGACCC 1486
Query 1734 ACTACTCATTCTGGAGTACTTCCTATGGCGTAAAGGTCACGAGTATGCTATATCCAATCA 1793
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1487 ACTGCTCATTCTGGAGTACTTTCTATGGCGTAAAGGTCACGAGTATGCTATATCCAATCA 1546
Query 1794 CTATGACCGTCATTGTTTATGGGAAGAGGTTGCACAAAACAAGAAGCTGAACAAGTATAA 1853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1547 CTATGACCGTCATTGTTTATGGGAAGAGGTTGCACAAAACAAGAAGCTGAACAAGTATAA 1606
Query 1854 CCATACTGTTATTAATCAACAGTTTCAGTTTTACAAGGCTGATGGGCTGACCAGATTCAA 1913
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1607 CCATACTGTTATTAATCAACAGTTTCAGTTTTACAAGGCTGATGGGCTAACCAGATTCAA 1666
Query 1914 TGCTTCGGATCCGTTCAAGCTTCTTCCTAGCAATGTTCCAGAGGGGTCTTTCATAGTACG 1973
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1667 CGCGTCGGATCCGTTCAAGCTTCTTCCTAGCAATGTTCCAGAGGGGTCTTTCATAGTACG 1726
Query 1974 AGCTCATACTCCCATGTCGAACCTATTCTCATGTCTTTGGTTCAATGAAGTGGAACGCTT 2033
||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||
Sbjct 1727 AGCTCATACTCCCATGTCGAATCTATTCTCTTGTCTTTGGTTCAATGAAGTAGAACGCTT 1786
Query 2034 CACTCCCCGGGACCAGCTGAGCTTTGCCTATACTTACCAGAAACTAAGAAGGATGAATCC 2093
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1787 CACTCCCCGGGACCAGCTGAGCTTTGCCTATACTTACCAGAAACTAAGAAGGATGAATCC 1846
Query 2094 TGATAAACCATTTAATCTTCACATGTTCAAGGACTGTGAGAGAAGAAAAATTGCAAAGTT 2153
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1847 TGATAAACCATTTAATCTTCACATGTTCAAGGACTGTGAGAGAAGAAAGATTGCAAAGTT 1906
Query 2154 GTTCCGTCACAGATCAGACGAGAAGCGAAACCTTATACAAGCAGCAATACAATAAACAAC 2213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1907 GTTCCGTCACAGATCAGACGAGAAGCGAAACCTTATACAAGCAGCAATACAATAAACAAC 1966
Query 2214 TCTATGTTGTACC 2226
|||||||||||||
Sbjct 1967 TCTATGTTGTACC 1979
> Ahg942741 jgi|Araly1|942741|scaffold_603285.1
Length=2138
Score = 1260 bits (682), Expect = 0.0
Identities = 1032/1202 (86%), Gaps = 20/1202 (2%)
Strand=Plus/Plus
Query 1020 TTCAAAAATGTCACTTGGGGATTCTTCTCTTGTTAGTAAGGGTGGTAAGTCTGGGAAAAC 1079
|||||||| ||||| |||| | |||||||||||| || |||||||||||| ||||||||
Sbjct 923 TTCAAAAAGGTCACGTGGGAAGTCTTCTCTTGTTGGTGCGGGTGGTAAGTCCGGGAAAAC 982
Query 1080 ATCACGATCTGATACTAAAAGA--AGAG-GTCGTCGCAGATCTTCA-G-GT-TCATGTGA 1133
||||| | ||||||| |||||| || | | ||| ||||| |||| | || || |||||
Sbjct 983 ATCACAAACTGATACAAAAAGACGAGCGCGAAGTCACAGATTTTCAGGCGTATCTTGTGA 1042
Query 1134 AATGAAGCTATTGAATTCTAGTCAACCAATAGTGGAGCCCTTGAATACTCGAAAA-TCTG 1192
|||||||| |||||||| ||||||| |||| ||||| ||||| |||| |||| | ||
Sbjct 1043 GATGAAGCTGTTGAATTCCAGTCAACAAATAAAAGAGCCTTTGAAAACTC-AAAATTTTG 1101
Query 1193 CTAG-ATTTTCTTTACAGTACATAGAGAAGGAAGATAAGCCTGATGAAGAAGAACAGTGG 1251
|| | | || ||||| |||||||||| ||| ||||| ||||||| |||||||||||||
Sbjct 1102 CT-GCACCCTCCTTACAATACATAGAGATGGAGGATAAACCTGATGGAGAAGAACAGTGG 1160
Query 1252 GAGCCTAGATTTGCAGGTCATCAGAGTTTACAGGAGCGAGAAGATTCCTTCGTGGCT-CA 1310
||||||| |||||||||||| |||||||||||||| |||||||| || ||| ||| | ||
Sbjct 1161 GAGCCTAAATTTGCAGGTCACCAGAGTTTACAGGAACGAGAAGACTCTTTCTTGG-TCCA 1219
Query 1311 AGA-CAAGAAAATTCATTGCGGCTTTGTCAAAGGTCCC-AAAGGATCT-TCAAGCACTGG 1367
||| | ||||||| ||||| |||||||||||| | ||| |||||| | ||||||||||
Sbjct 1220 AGAGC-AGAAAATCCATTGTGGCTTTGTCAAA-GCCCCTGAAGGAT-TGCCAAGCACTGG 1276
Query 1368 GTTTGACCTGACAGAAGATGATACTAATTATATCAGTAGATGCCACATCGCTGTTAGCTC 1427
||||||||||||||||||||| |||| |||||||||||||| ||||||||||| | ||
Sbjct 1277 ATTTGACCTGACAGAAGATGATGCTAACTATATCAGTAGATGTCACATCGCTGTGATATC 1336
Query 1428 ATGCATCTTTGGCAATTCTGATCGTTTGAGGCCTCCTGCCAACAAAATGATAAGTCGGTT 1487
|| || ||||| ||||||||||| ||||||| |||||| || |||||| ||||| | ||
Sbjct 1337 CTGTATTTTTGGAAATTCTGATCGCTTGAGGCATCCTGCTAATAAAATGGTAAGTAGTTT 1396
Query 1488 GTCGAGAAAAAATGTATGCTTCATTGTGTTCGTGGACGAGATTACCATGCAAACACTTTC 1547
||| |||||| |||| |||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1397 GTCAAGAAAAGATGTTTGCTTCGTTGTGTTTGTGGACGAGATTACCATGCAAACACTTTC 1456
Query 1548 TGCAGAAGGACATGCCCCAGACAGAGCAGGATTCATTGGTCTGTGGAAGTTGGTTGTCGT 1607
||| ||||| || | || ||| |||| |||||| ||||||||||||| |||||||| ||
Sbjct 1457 TGCCGAAGGCCAAGTACCTGACGGAGCTGGATTCGTTGGTCTGTGGAAATTGGTTGTGGT 1516
Query 1608 GAAGAATCTTCCTTACGCAGATATGCGGAGGGTAGGAAAAATACCAAAAATGTTGCCACA 1667
|| ||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||
Sbjct 1517 GAGGAATCTTCCTTACGCAGATATGCGGAGGGTAGGGAAAATACCAAAACTGTTACCACA 1576
Query 1668 CCGACTTTTCCCATCAGCAAGGTACTCAATCTGGTTGGACAGCAAGTTACGACTTCAGTT 1727
| |||||||||| || |||||||||||||||||||| |||||||||||||| || |||||
Sbjct 1577 CAGACTTTTCCCTTCGGCAAGGTACTCAATCTGGTTAGACAGCAAGTTACGTCTCCAGTT 1636
Query 1728 GGACCCACTACTCATTCTGGAGTACTTCCTATGGCGTAAAGGTCACGAGTATGCTATATC 1787
|||||| ||| |||| ||||| ||||| || |||||| |||| |||||||||||||| ||
Sbjct 1637 GGACCCCCTAGTCATACTGGAATACTTTCTGTGGCGTGAAGGGCACGAGTATGCTATCTC 1696
Query 1788 CAATCACTATGACCGTCATTGTTTATGGGAAGAGGTTGCACAAAACAAGAAGCTGAACAA 1847
||| || || ||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1697 CAACCATTACGACCGCCATTGCCTATGGGAAGAGGTTGCACAAAACAAGAAGCTGAACAA 1756
Query 1848 GTATAACCATACTGTTATTAATCAACAGTTTCAGTTTTACAAGGCTGATGGGCTGACCAG 1907
||| || || ||||| ||| |||| || ||| |||||||| ||||||| |||||||| ||
Sbjct 1757 GTACAATCACACTGTCATTGATCAGCAATTTGAGTTTTACCAGGCTGACGGGCTGACGAG 1816
Query 1908 ATTCAATGCTTCGGATCCGTTCAAGCTTCTTCCTAGCAATGTTCCAGAGGGGTCTTTCAT 1967
|||||||||||| ||||| |||||||||||| |||||||||||||| |||||||||||
Sbjct 1817 ATTCAATGCTTCAGATCCCAACAAGCTTCTTCCCAGCAATGTTCCAGAAGGGTCTTTCAT 1876
Query 1968 AGTACGAGCTCATACTCCCATGTCGAACCTATTCTCATGTCTTTGGTTCAATGAAGTGGA 2027
||||||| ||||| |||||||| ||||||||||| |||||||||||||| ||||| ||
Sbjct 1877 TGTACGAGAACATACCCCCATGTCAAACCTATTCTCTTGTCTTTGGTTCAACGAAGTTGA 1936
Query 2028 ACGCTTCACTCCCCGGGACCAGCTGAGCTTTGCCTATACTTACCAGAAACTAAGAAGGAT 2087
|||||||||||||| || |||||||||||||| || || ||||||||| ||| ||||||
Sbjct 1937 GCGCTTCACTCCCCGAGATCAGCTGAGCTTTGCATACACCTACCAGAAATTAACAAGGAT 1996
Query 2088 GAATCCTGATAAACCATTTAATCTTCACATGTTCAAGGACTGTGAGAGAAGAAAAATTGC 2147
||||||||| | |||||||||||||||||||||||||| || ||||| |||||||| |
Sbjct 1997 GAATCCTGACACTCCATTTAATCTTCACATGTTCAAGGATTGCGAGAGGAGAAAAATCAC 2056
Query 2148 -AAAGTTGTTCCGTCACAGATCAGACGAGAAGCGAAACCTTATACAAGCAGCAATACAAT 2206
||| ||||| |||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 2057 CAAA-TTGTTTCGTCACAGATCAGAAGAGAAGCGAAACCTTATACAAGCAGCAACACAAT 2115
Query 2207 AA 2208
||
Sbjct 2116 AA 2117
> Ahg313952 jgi|Araly1|313952|fgenesh1_pm.C_scaffold_1002732
Length=621
Score = 137 bits (74), Expect = 3e-31
Identities = 84/89 (94%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 164 TTTCTGGTTCGGGTGTTAATGCCACAAGTGACTGGGGTAGCTATGTTACTGAGCTAAGCT 223
|||| |||||||||||||||||||||| |||| ||| ||||||||||||||||||||||
Sbjct 515 TTTCCGGTTCGGGTGTTAATGCCACAACCGACTTGGGAAGCTATGTTACTGAGCTAAGCT 574
Query 224 CTCTTCTTGAAAAATCTCCTAAGATTGAA 252
|||||||||||||||||||||||||||||
Sbjct 575 CTCTTCTTGAAAAATCTCCTAAGATTGAA 603
> Ahg891202 jgi|Araly1|891202|Al_scaffold_0007_3188
Length=675
Score = 119 bits (64), Expect = 1e-25
Identities = 82/90 (91%), Gaps = 3/90 (3%)
Strand=Plus/Plus
Query 165 TTCTGGTTCGGGTGTTAATGC--C-ACAAGTGACTGGGGTAGCTATGTTACTGAGCTAAG 221
||||||||||||||||||||| | |||| |||| ||| ||||||||||||||||||||
Sbjct 567 TTCTGGTTCGGGTGTTAATGCTGCCACAACCGACTTGGGAAGCTATGTTACTGAGCTAAG 626
Query 222 CTCTCTTCTTGAAAAATCTCCTAAGATTGA 251
|||||||||||| |||||||||||||||||
Sbjct 627 CTCTCTTCTTGACAAATCTCCTAAGATTGA 656
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98044290630
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5