BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G34570.1
Length=1026
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313952 jgi|Araly1|313952|fgenesh1_pm.C_scaffold_1002732 832 0.0
Ahg891202 jgi|Araly1|891202|Al_scaffold_0007_3188 553 1e-156
> Ahg313952 jgi|Araly1|313952|fgenesh1_pm.C_scaffold_1002732
Length=621
Score = 832 bits (450), Expect = 0.0
Identities = 573/631 (91%), Gaps = 14/631 (2%)
Strand=Plus/Plus
Query 43 ATGGAGCCGCCTGAAGATGGGAAGGTTAATTTCGCCAAAGAGCTTTATGGAGAAAGTTTG 102
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
Sbjct 1 ATGGAGCCGCCTGAAGATGTGAAGGATAATTTCGCCAAAGAGCTTTATGGAGAAAGTGTA 60
Query 103 CAGATTTCGAAACTTAGTAATAAAGATCATGGTCTTGAGAATTTAGATGATCCCTTTTAC 162
||| ||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 61 CAGCTTTCGAAACATGGTAATAAAGATCATGTTCTTGAGAATTTAGATGATCCCTTTTAC 120
Query 163 GGAAGTTCAGATGAAGATTATAGTGAAGCTCGCGTGTTGGACAATGAGAATGAGC-AGAG 221
||||||||||||||||||||||||||| ||||||| ||||||||||||||| | | |||
Sbjct 121 GGAAGTTCAGATGAAGATTATAGTGAAACTCGCGTCTTGGACAATGAGAAT-AACTTGAG 179
Query 222 ACGTGTGAAATTCCACTCGGCTGGATATCGTGATGGGATTGTTGTCGGGAAAGAAGCTAT 281
|||||||||||| | ||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 180 ACGTGTGAAATTTGAATCGGCTGGATACCGTGATGGGATTGTTGCCGGGAAAGAAGCTAT 239
Query 282 TGCGCAGGAAGGTTATAACTTTGGCTATAAGGAATCAGTTCTTGCTGGTTACAAGTTTGG 341
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 240 TGCGCAGGAAGGTTATAACTTTGGCTATAAGGAATCTGTTCTTGATGGTTACAAGTTTGG 299
Query 342 TATTGTTAGAGGTGTTTCTAGTGCGCTGGCTTTCCTCCCGGTTGAGTTTAGAGAAAAGCT 401
|||||| ||||||||||| |||||||| ||||||||||| | |||| |||||||||||||
Sbjct 300 TATTGTAAGAGGTGTTTCCAGTGCGCTTGCTTTCCTCCCTGATGAGCTTAGAGAAAAGCT 359
Query 402 TATCGATGAACAAGAAACTAGAGAGAAGTTTCAGAAATTACACAGTTCTGTGCATGCTCT 461
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AATCGATGAACAAGAAACTAGAGAGAAGTTTCAGAAATTACACAGTTCTGTGCATGCTCT 419
Query 462 TTCGACGGAAGTCGCAATGAAGCAGTTCTATGAAACTTTGACTACGAAA-CAAGGGGAAG 520
|| || ||||| |||||||| | ||||||||||||||||||||| ||| |||||||||
Sbjct 420 CTCAACTGAAGTAGCAATGAAACGGTTCTATGAAACTTTGACTAC-AAAGCAAGGGGAAA 478
Query 521 AGAAGAGTGGAGAAGAAGGGCCCGACTCTTG-TTCTGTTTCAGGTTCTTGTTCAGGTGTT 579
|||||||||||||||||||| | |||| ||| ||||||||| ||||| | ||||||
Sbjct 479 AGAAGAGTGGAGAAGAAGGGTCTGACT-TTGGTTCTGTTTCCGGTTC--G----GGTGTT 531
Query 580 AATGTCACAGCCGACTTAGGAAGCTATGTTACTGAGCTAAGTTCTCTTCTTGACAAATCT 639
|||| |||| ||||||| ||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 532 AATGCCACAACCGACTTGGGAAGCTATGTTACTGAGCTAAGCTCTCTTCTTGAAAAATCT 591
Query 640 CC-AACGATTGAAGTGAAATTTGATACATAG 669
|| || ||||||||| ||||| || ||||||
Sbjct 592 CCTAA-GATTGAAGTTAAATTGGACACATAG 621
> Ahg891202 jgi|Araly1|891202|Al_scaffold_0007_3188
Length=675
Score = 553 bits (299), Expect = 1e-156
Identities = 467/545 (86%), Gaps = 24/545 (4%)
Strand=Plus/Plus
Query 134 GTCTTGAGAATTTAGATGATCCCTTTTACGGAAGTTCAGATGAAG-A-TTA-TAGTGAAG 190
|||||||||||| ||| |||||||||||||||||||| ||||||| | || ||||||||
Sbjct 146 GTCTTGAGAATTCAGAGGATCCCTTTTACGGAAGTTCGGATGAAGAACATAGTAGTGAAG 205
Query 191 CTCGCGTGTTGGACAATGAGAATGAGCAGAGACGTGTGAAATTCCACTCGGCTGGATATC 250
||||||||||||||||||||||| || ||||| ||| ||||||||| |||||||||| |
Sbjct 206 CTCGCGTGTTGGACAATGAGAATAAGTTGAGACTTGTTAAATTCCACACGGCTGGATACC 265
Query 251 GTGATGGGATTGTTGTCGGGAAAGAAGCTATTGCGCAGGAAGGTTATAACTTTGGCTATA 310
||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 266 GTGATGGGATTGTCGCCGGGAAAGAAGCTATTGCGCAACAAGGTTATAACTTTGGCTATA 325
Query 311 AGGAATCAGTTCTTGCTGGTTACAAGTTTGGTATTGTTAGAGGTGTTTCTAGTGCGCTGG 370
||||||||||||||| || ||||| ||||||||||||||||||||||| ||||| ||||
Sbjct 326 AGGAATCAGTTCTTGATGCCTACAAATTTGGTATTGTTAGAGGTGTTTCCAGTGCACTGG 385
Query 371 CTTTCCTCCCGGTTGAGTTTAGAGAAAAGCTTATCGATGAACAAGAAACTAGAGAGAAGT 430
|||||||||| | |||| | ||||| ||||| |||||||||||||||||| |||| || |
Sbjct 386 CTTTCCTCCCAGATGAGCTAAGAGAGAAGCTGATCGATGAACAAGAAACTCGAGATAATT 445
Query 431 TTCAGAAATTACACAGTTCTGTGCATGCTCTT-TCGAC-GGAAGTCGCAATGAAGCAGTT 488
|||||||||||||||||| ||||||||| ||| || || |||||| |||||||||| |||
Sbjct 446 TTCAGAAATTACACAGTTGTGTGCATGC-CTTATC-ACCGGAAGTAGCAATGAAGCGGTT 503
Query 489 CTATGAAACTTTGACTACGAAA-CAAGGGGAAGAGAA-GAGTGGAGAAGAAGGGCCCGAC 546
||||||||| ||||||| ||| ||| |||||| ||| ||||||||| ||||| | |||
Sbjct 504 CTATGAAACGCTGACTAC-AAAGCAAAGGGAAG-GAAAGAGTGGAGATCAAGGGTCTGAC 561
Query 547 TCTTGTTCTGTTTCAGGTTCTTGTTCAGGTGTTAATGTCACAGCCGACTTAGGAAGCTAT 606
| |||||| ||| ||| ||| | || | | |||| ||||||| |||||||||
Sbjct 562 AATGGTTCTGGTTCGGGT----GTTAA--TGCT---GCCACAACCGACTTGGGAAGCTAT 612
Query 607 GTTACTGAGCTAAGTTCTCTTCTTGACAAATCTCC-AACGATTGA-AGTGAAATTTGATA 664
|||||||||||||| |||||||||||||||||||| || |||||| | | ||||| || |
Sbjct 613 GTTACTGAGCTAAGCTCTCTTCTTGACAAATCTCCTAA-GATTGACATT-AAATTGGACA 670
Query 665 CATAG 669
|||||
Sbjct 671 CATAG 675
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38161039917
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5