BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G34630.1
Length=1769
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922573 jgi|Araly1|922573|scaffold_103854.1 2307 0.0
> Ahg922573 jgi|Araly1|922573|scaffold_103854.1
Length=1486
Score = 2307 bits (1249), Expect = 0.0
Identities = 1396/1469 (95%), Gaps = 2/1469 (0%)
Strand=Plus/Plus
Query 107 CCGCCGTCGTCATGTCGCCGTCCGACGAATCGACGAACGGTTCTCGTTGCTCATCATGCA 166
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 10 CCGCCGTCGTCATGTCGCCTTCCGGCGAATCGACGAACGGTTCTCGTTGCTCATCATGCA 69
Query 167 TCTCCAGCGACA-ACGATGGCAACGATTTCGGTAAATCGGATGAGTTTACATGCAAACAA 225
|||| | |||| | ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 70 TCTCTGGTGACATA-TATGGCGACGATTTCCGTAAATCGGATGAGTTTACATGCAAACAA 128
Query 226 TGCAAAAACTCCGATTCGAAATCGAAATCAAAATCGGTGAATGATTCGGATAAGCTTCGA 285
|||||||| |||||||||||||| ||||| |||||||| |||||||| || |||||||||
Sbjct 129 TGCAAAAATTCCGATTCGAAATCTAAATCGAAATCGGTTAATGATTCAGAGAAGCTTCGA 188
Query 286 AGAATCATCGTCGCTTCCGTCAAAGGATTCACTATAGGTACTGGTTTAAAAGGTGGTTTA 345
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 189 AGAATCATCGTCGCTTCCGTCAAAGGATTCACTATAGGTACTGGTTTAAAAGGTGGATTA 248
Query 346 GCTATTTTCTCAATCGTCGCTCGTTTCGCTCGTCGTCGTAGATCTTCTCCTCAATCTAGG 405
|| |||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||
Sbjct 249 GCGATTTTCTCAATCGTCGCTCGTTTCGCTCGTCGCCGTAGATCTTCTCTTCAATCGAGG 308
Query 406 AAAACCGGAGAGTTTTCGAATAGTGAAGCTATCGCTATGGGGATTAAGGAGACGTTAAGA 465
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 309 AAAACCGGAGAGTTTTCGAATAGTGAAGCTATTGCTATGGGGATTAAGGAGACATTAAGA 368
Query 466 TATGGATTGTTCTTAGGAACTTTTGCTGGGACTTTTGTTTCTGTAGATGAAGCTATTGCT 525
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 369 TATGGATTGTTCTTAGGAACTTTTGCTGGGACTTTTGTTTCAGTAGATGAAGCTATTGCT 428
Query 526 GCTTTAGCAGGAGACAAGAGAACTGCAAAATGGAGGGCCCTGTTTGCTGGATTGGTGGCT 585
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 429 GCTTTAGCAGGAGACAAGAGAACTGCAAAGTGGAGGGCCCTGTTTGCTGGATTGGTGGCT 488
Query 586 GGACCATCTATGCTTCTCACAGGGCCAAATACGCAACATACGAGTTTGGCTGTTTATATA 645
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 489 GGACCATCTATGCTTCTCACAGGGCCAAATACTCAACATACAAGTTTGGCTGTTTATATA 548
Query 646 TTGATGCGTGCTGCGGTTCTCGCATCGCGTTGCGGTATTAAAAGTAAACGCTTTGGTACC 705
|||||||||||||||||||| || ||||| |||||||||||||||||||| |||||| ||
Sbjct 549 TTGATGCGTGCTGCGGTTCTTGCGTCGCGGTGCGGTATTAAAAGTAAACGGTTTGGTTCC 608
Query 706 ATTTGCAAGCCACTTACTTGGAAACATGGAGATTTATTCCTCATGTGTCTCTCTTCCTCA 765
|| |||||||| |||||||||||||||||||||||||| |||||||||||||| || |||
Sbjct 609 ATATGCAAGCCGCTTACTTGGAAACATGGAGATTTATTTCTCATGTGTCTCTCATCTTCA 668
Query 766 CAGATTTTGTCTGCTTACATTTTGAAACAAGAAAGCCTTCCTTCATCGTACAAGTCTTTC 825
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 669 CAGATTTTGTCTGCTTACATTTTGAAACAAGAAAGTCTTCCTTCATCGTACAAGTCTTTC 728
Query 826 CTTAACAAACAAGGTGGGAAGGATCTTTCAATCTTACAAGGCGTAAAAGATATCGCAACC 885
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
Sbjct 729 CTTAACAAACAAGGTGGGAAGGATCTTTCTATCTTACAAGGCGTAAAAGATATTGCAAGC 788
Query 886 GCGCAACCGTTCACTAATTTAAGAGCGATTGAGAAATATTACAAGTCTGTTGGAGTTGAT 945
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 789 GCCCAACCGTTCACTAATCTAAGAGCGATTGAGAAATATTACAAGTCTGTTGGAGTTGAT 848
Query 946 ATCAAACTGGATCCTACCATGAAAGTCCCCTGTACGATAATACATGGAAATGAGTCATGT 1005
|||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 849 ATCAAACTAGATCCTAACATGAAAGTCCCCTGTTCGATAATACATGGAAATGAGTCATGT 908
Query 1006 GTTAAGCATGGTGTTACATTTTTCCTTCAAGCTTACAAGAGGGCGTTACCTGTCTATGTC 1065
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 909 GTTAAGCATGGTATTACATTTTTCCTGCAAGCTTACAAGAGGGCGTTACCTGTCTATGTC 968
Query 1066 CCTGTGTATTTGATTCCAGCGCTAATAGTCCATCGTCAAGACCTGCTAAAAAAGCAATAC 1125
||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 969 CCTGTCTATTTGATTCCAGCGCTAATCGTTCATCGTCAAGACCTGCTAAAAAAGCAATAC 1028
Query 1126 TCTATACTTGGCAAGGGTCTTCTGGGCACAGCGAGATCAAGTTTGTTTCTCGCTACTTAC 1185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1029 TCTATACTTGGCAAGGGTCTTCTGGGCACAGCGAGATCAAGTTTGTTTCTCGCTACTTAC 1088
Query 1186 TGCTCTTCTGCCTGGGCTTGGACTTGTCTACTATTCCGCACTTTTGAGACATGCAACATA 1245
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1089 TGCTCTTCTGCCTGGGCTTGGACTTGTCTACTTTTCCGGACTTTTGAGACATGCAACATA 1148
Query 1246 CCGCTTGTGGCCATAGCAACATTCCCAACAGGTCTGGCTTTAGCTATTGAGAAGAAAAGC 1305
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1149 CCTCTTGTGGCCATAGCAACGTTCCCAACAGGTCTGGCTTTAGCTATTGAGAAGAAAAGC 1208
Query 1306 AGAAGGATAGAGATATCACTATACTGCTTAGCGAGGGCGATAGAGAGCTTCTTTACTTGC 1365
|||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 1209 AGAAGGATAGAGATATCACTCTACTGCTTAGCGAGGGCAATAGAGAGCTTCTTCACTTGC 1268
Query 1366 ATGACAGAGGCAGGATACATTCGACCGCCCAAGAGTTTAAGAAGAGCGGATGTGGTTGTG 1425
|||||||| ||||||||||||||||||| ||||||| |||||||||| ||||||||||||
Sbjct 1269 ATGACAGATGCAGGATACATTCGACCGCACAAGAGTCTAAGAAGAGCAGATGTGGTTGTG 1328
Query 1426 TTCAGCGTTTCGACAGCCATTATAATGCATTGTTACGCACAAGAAAGAGACGTATTTCGA 1485
||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1329 TTCAGCGTTTCAACAGCCATTATAATGCATTGTTACGCACAGGAAAGAGAAGTATTTCGA 1388
Query 1486 TCAAAATACTTGAACGTACTAGATTGGGTCTTCGGTGTTCCTCCTCCCCCTCCTGCTCCT 1545
||||||||||| ||||| ||||||||||| ||||||||||||||||| |||||| | ||
Sbjct 1389 TCAAAATACTTAAACGTGCTAGATTGGGTTTTCGGTGTTCCTCCTCCTCCTCCTCCCCCC 1448
Query 1546 TCTTGCGAAACAACCTAGAGACATTCACT 1574
||||||||||||||||||||||||||||
Sbjct 1449 CCTTGCGAAACAACCTAGAGACATTCACT 1477
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66391297035
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5