BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G35140.1
Length=1132
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473657 jgi|Araly1|473657|fgenesh2_kg.1__3611__AT1G35140.1 1362 0.0
> Ahg473657 jgi|Araly1|473657|fgenesh2_kg.1__3611__AT1G35140.1
Length=935
Score = 1362 bits (737), Expect = 0.0
Identities = 873/939 (93%), Gaps = 8/939 (1%)
Strand=Plus/Plus
Query 91 AAATGGCTTCTTTTGTGATGGGATACTTCTTATTGTTCGCTGTTGC-TTTCATGTGTTTG 149
||||||| ||||||||||||| ||||||||||||||||||||||| ||| ||||||||
Sbjct 1 AAATGGCGACTTTTGTGATGGGTTACTTCTTATTGTTCGCTGTTGCGTTT-GTGTGTTTG 59
Query 150 GATGCGAGAACGGACAAAACGCAAGATTATACGTCGTTTCAGTACCATAAAGGAGCTCTC 209
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GATGCGAGGACGGACAAAACGCAAGATTATACGTCGTTTCAGTACCATAAAGGAGCTCTC 119
Query 210 CTCACCGGAGACGTTTCCATCAACCTAATCTGGTACGGTAAGTTTAAACCGTCGCAGCGT 269
|||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 120 CTCACCGGAGACGTCTCCATCAACCTGATATGGTACGGTAAGTTTAAACCGTCGCAGCGT 179
Query 270 GCAATCGTAACCGATTTCGTTGCTTCCCTCTCGTCTTCCCGGAGATCGACCATGGCTCAA 329
|||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 180 GCAATCGTAACCGACTTCGTTGCTTCCCTCTCGTCTTCCCGGAGATCGACCGTTGCTCAA 239
Query 330 AATCCC-TCAGTCGCCACGTGGTGGAAGACGGTGGAGAAGTATTACCAATTCCGCAAGAT 388
|| ||| || || ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 240 AA-CCCATCGGTTGCCACGTGGTGGAAGACGGTGGAGAAGTATTACCACGTCAGCAAGAC 298
Query 389 GACCACGACACGTGGACTCAGTCTCTCCCTCGGAGAACAGATCCTCGACCAAGGATACTC 448
||| |||||||||||||||| |||||| |||||||||||||| ||||| ||||||||||
Sbjct 299 GACGACGACACGTGGACTCACTCTCTCACTCGGAGAACAGATTCTCGATGAAGGATACTC 358
Query 449 AATGGGAAAATCTTTAACAGAGAAAAACCTCAAAGA-CTTGGCCGCAAAAGGTGGCCAAA 507
||||||||||||||||||||||| |||||||||| | ||||||||| ||||| | ||||
Sbjct 359 AATGGGAAAATCTTTAACAGAGAGAAACCTCAAA-ACCTTGGCCGCTAAAGGCCGTCAAA 417
Query 508 GCTACGCGGTTAACGTCGTGTTGACCTCAGCTGACGTGACGGTCCAAGGCTTTTGCATGA 567
|||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 418 GCTATGCGGTTAACGTGGTGTTGACCTCAGCTGACGTGTCGGTCCAAGGCTTTTGCATGA 477
Query 568 ACAGATGCGGGTCACACGGGACTGGTTCCGGGTCAGGCAAGAAAGGATCAAGATTCGCTT 627
|| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 478 ACCGATGCGGGTCACACGGGTCAGGTTCCGGGTCAGGCAAGAAAGGATCAAGATTCGCTT 537
Query 628 ACATCTGGGTTGGAAACTCAGA-AACACAATGTCCAGGACAATGCGCGTGGCCATTCCAC 686
|||||||||| || |||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 538 ACATCTGGGTCGGGAACTCAGAGAA-ACAATGTCCAGGACAATGCGCGTGGCCATTCCAC 596
Query 687 GCGCCGGTTTACGGACCGCAAAGCCCACCACTAGTGGCACCAAACAACGACGTTGGTTTA 746
||||| ||||| |||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 597 GCGCCTGTTTATGGACCGCAAAGCCCACCACTTGTTGCACCAAACAACGACGTTGGTTTA 656
Query 747 GACGGGATGGTGATTAACTTGGCGAGTCTCATGGCTGCGACGGCAACGAACCCGTTCGGA 806
|| |||||||| ||||||||||||||||| |||||| ||| ||||||||||| ||||||
Sbjct 657 GATGGGATGGTCATTAACTTGGCGAGTCTTTTGGCTGGGACCGCAACGAACCCATTCGGA 716
Query 807 GATGGATATTACCAAGGGCCTAAAACGGCACCGCTTGAGGCTGGATCGGCTTGTACTGGA 866
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 717 GATGGGTATTACCAAGGGCCTAAAACGGCACCGCTTGAAGCTGGATCGGCTTGTACTGGA 776
Query 867 GTCTATGGGAAAGGTTCGTATCCTGGTTATGCTGGAGAGTTACTTGTGGATGCAACGACC 926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 GTCTATGGGAAAGGTTCGTATCCTGGTTATGCTGGAGAGTTACTTGTGGATGCAACGACC 836
Query 927 GGTGGGAGTTATAACGTTAAGGGACTGAATGGGAGAAAATATTTGTTACCGGCTTTGTTT 986
|||||||||||||||| ||||||| |||||||||| ||||||||| ||||||||||||||
Sbjct 837 GGTGGGAGTTATAACGCTAAGGGATTGAATGGGAGGAAATATTTGCTACCGGCTTTGTTT 896
Query 987 GACCCTAAAACAGATTCTTGCTCGACTCTGTTTTGAATA 1025
||||| |||||| | ||||||||||| |||||||||||
Sbjct 897 GACCCCAAAACATCTACTTGCTCGACTATGTTTTGAATA 935
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42202069119
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5