BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G35190.1
Length=1353
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473661 jgi|Araly1|473661|fgenesh2_kg.1__3615__AT1G35190.1 1755 0.0
Ahg485020 jgi|Araly1|485020|fgenesh2_kg.5__1012__AT3G46490.1 699 0.0
Ahg359346 jgi|Araly1|359346|fgenesh1_pg.C_scaffold_132000003 507 1e-142
Ahg937350 jgi|Araly1|937350|scaffold_501541.1 213 3e-54
> Ahg473661 jgi|Araly1|473661|fgenesh2_kg.1__3615__AT1G35190.1
Length=1210
Score = 1755 bits (950), Expect = 0.0
Identities = 1122/1203 (93%), Gaps = 19/1203 (2%)
Strand=Plus/Plus
Query 135 CGACCATGAAAGTTTCATCTCTTAATTGTATCGATCTAGCCAACGACGATCTTAATCATT 194
|||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||| ||
Sbjct 23 CGACCATGAAAGTTTCATCTCTTAATTGTATCGATCTAGCTAACGATGATCTTCATCTTT 82
Query 195 CTGTTGTTTCCCTCAAACAGGCATGTTTGGATTGTGGATTTTTCTATGTGATCAATCATG 254
| |||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 83 CAGTTGCTTCCCTTAAACAGGCATCTTTGGATTGTGGATTTTTCTATGTGATCAATCATG 142
Query 255 GGATAAGCGAAGAGTTCATGGACGATGTTTTCGAGCAGAGCAAGAAGCTTTTTGCTCTTC 314
|||||| ||||||||||||||| |||||||||||||||||||||||| ||||||| ||||
Sbjct 143 GGATAAACGAAGAGTTCATGGAAGATGTTTTCGAGCAGAGCAAGAAGTTTTTTGCCCTTC 202
Query 315 CTTTAGAAGAAAAGATGAAAGTGTTGAGAAACGAAAAGCATCGAGGCTATACACCTGTTC 374
||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 203 CTTTAGAGGAGAAGATGAAAGTGTTGAGAAACGAAAAGCATAGAGGCTATACACCTGTTC 262
Query 375 TTGATGAACTTTTAGATCCCAAGAATCAAATCAATGGGGATCACAAAGAGGGTTATTACA 434
|||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 263 TTGATGAAAAATTAGATCCCAAGAATCAAGTCAATGGGGATCACAAAGAAGGTTATTACA 322
Query 435 TTGGAATTGAAGTTCCTAAAGATGATCCTCATTGGGATAAGCCATTCTATGGTCCTAACC 494
|||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 323 TTGGAATTGAAGTTCCTAAAGATGATCCTCATTGGGATAAACCATTTTATGGCCCTAACC 382
Query 495 CTTGGCCTGATGCTGATGTTTTACCTGGTTGGCGAGAAACAATGGAGAAATATCATCAAG 554
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 383 CTTGGCCTGATACTGATGTTTTACCTGGTTGGCGAGAAACAATGGAGAAATATCATCAAG 442
Query 555 AAGCATTGAGGGTTTCTATGGCTATTGCAAGACTTTTGGCGTTAGCACTTGACTTGGATG 614
|||||||||||||||||| |||||||| || ||| |||||||||||||| ||||||||||
Sbjct 443 AAGCATTGAGGGTTTCTAAGGCTATTGGAAAACTATTGGCGTTAGCACTCGACTTGGATG 502
Query 615 TGGGATACTTTGATAGGACGGAGATGCTTGGAAAACCTATTGCAACTATGCGACTGTTGC 674
||| ||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||
Sbjct 503 TGGAATACTTTGATAGGACAGAGATGCTTGGAAAGCCTATTGCAACTATGCGATTGTTGC 562
Query 675 GGTATCAAGGGATTTCTGATCCTTCGAAAGGAATATATGCATGTGGAGCACATTCTGACT 734
| |||||||||||||||||||| || ||||||||||||||||||||||||||||| || |
Sbjct 563 GCTATCAAGGGATTTCTGATCCCTCAAAAGGAATATATGCATGTGGAGCACATTCAGATT 622
Query 735 TCGGAATGATGACTCTGTTAGCCACTGATGGTGTAATGGGACTCCAGATATGCAAAGATA 794
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 623 TCGGAATGATGACTCTGTTAGCCACCGATGGTGTAATGGGACTCCAGATATGCAAAGATA 682
Query 795 AGAACGCGATGCCGCAGAAGTGGGAATATGTACCGCCGATTAAAGGAGCATTTATAGTGA 854
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 683 AGAACGCGACGCCTCAGAAGTGGGAATATGTACCGCCGATTAAAGGAGCATTTATCGTGA 742
Query 855 ATCTTGGCGATATGCTGGAACGTTGGAGCAATGGCTTTTTTAAATCCACGTTGCATCGGG 914
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 743 ATCTTGGCGATATGCTGGAACGTTGGAGTAATGGCTTTTTCAAATCCACGTTGCATCGGG 802
Query 915 TTCTTGGAAACGGTCAGGAACGATATTCTATTCCATTCTTTGTGGAACCAAATCATGACT 974
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 803 TTCTTGGGAACGGTCAGGAACGATATTCCATTCCATTCTTTGTGGAACCAAATCATGACT 862
Query 975 GTCTCGTGGAGTGTCTCCCAACCTGCAAGTCGGAAAGCGAGCTTCCTAAATATCCACCGA 1034
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 863 GTCTCGTGGAGTGTCTCCCAACCTGCAAGTCGGAAAGCGACCTTCCTAAATATCCACCGA 922
Query 1035 TCAAATGTTCGACATACCTCACCCAGCGTTACGAGGAAACACATGCGAATTTAAGCATCT 1094
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 923 TCAAATGCTCGACATACCTCACCCAGCGTTACGAGGAAACACATGCGAAGTTAAGCATCT 982
Query 1095 ACCACCAACAAACATGAATGCTCTTTGTGAGATCGACACTAGGAGGGAGTCTACAAAAGT 1154
|||||||||||||||||||||||||| ||| || ||||||||| |||||||||||||||
Sbjct 983 ACCACCAACAAACATGAATGCTCTTTTTGA--TCAACACTAGGAAGGAGTCTACAAAAGT 1040
Query 1155 AAATTTTATGTAAGTTCGTTGTTA-G--CTCAAAG-CAAAGTAAAAGATATTGTAAGAAT 1210
|| ||| || |||||||| ||||| | || |||| | ||||||||||||||||
Sbjct 1041 AAGTTT-ATATAAGTTCGCTGTTACGTACTTAAAGTCC---TAAAAGATATTGTAAG--- 1093
Query 1211 GTAAGGTAAGTGAAGTTTACGGCCACACCCTCCCTTACTTATTGGGAGGGATACACATAC 1270
||||| | | || |||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1094 GTAAG-TGA---AA-TTTACGGC-ACACCCTCCCTTACTTATTGGGAGGGATACACATGC 1147
Query 1271 TTATGTCTTGTTTCAATCTATGTATCTGTACGAATTGACAGTCTCTTTAACGTTTAGAAT 1330
|||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||
Sbjct 1148 TTATGTCTTGTTTCAATCTATGCATCTGTACGAATTGACAGTCTCTGTAACATTTAGAAT 1207
Query 1331 CTA 1333
|||
Sbjct 1208 CTA 1210
> Ahg485020 jgi|Araly1|485020|fgenesh2_kg.5__1012__AT3G46490.1
Length=996
Score = 699 bits (378), Expect = 0.0
Identities = 771/959 (80%), Gaps = 34/959 (4%)
Strand=Plus/Plus
Query 139 CATGAAAGTTTCAT-CTCTTAATTGTATCGATCTAGCCAACGACGATCTTAATCATTCTG 197
||| |||||||| | | |||| ||| || ||||| | |||| | ||||| |||| || |
Sbjct 36 CATCAAAGTTTC-TGCCCTTACTTGCATAGATCTCGACAACTCCAATCTTCATCAATCAG 94
Query 198 TTGTTTCCCTCAAACAGGCATGTTTGGATTGTGGATTTTTCTATGTGATCAATCATGGGA 257
||||| ||||| ||||||||| | ||| |||||||||||||||| || |||||||| |
Sbjct 95 CTGTTTTACTCAAGCAGGCATGTCTCGATAGTGGATTTTTCTATGTCATTAATCATGGTA 154
Query 258 TAAGCGAAGAGTTCATGGACGATG-TTTTCGAGCAGAGCAAGAAGCTTTTTGCTCTTCCT 316
||||||| || | | |||||| | |||| || |||||||||||| ||||||||||||||
Sbjct 155 TAAGCGAGGAACTGAAGGACGAGGCTTTT-GAACAGAGCAAGAAGTTTTTTGCTCTTCCT 213
Query 317 TTAGAAGA-AAAGATGAAAGTGTTGAGAAACGAAAAGCATCGAGGCTATACACC-TGTTC 374
|| || || ||| |||||||| |||||||| |||||| ||||||||||| |||| | |||
Sbjct 214 TTGGAGGAGAAA-ATGAAAGTCTTGAGAAATGAAAAGTATCGAGGCTATGCACCAT-TTC 271
Query 375 TTGATGAACTTTTAGATCCC-AAGAATCAAAT-CAATGGGGATC-ACAAAGAGGGTTATT 431
||| || ||||| ||| || || ||| | | | ||||| | |||||||||||| ||
Sbjct 272 ACGATTCTCTCTTAGA-CCCTAAAAACCAATTCCGA-GGGGA-CTACAAAGAGGGTT-TT 327
Query 432 A-CATTGGAATT-GAA-GTTCCTAAAGATGATCCTCATTGGGATAAGCCATTCTATGGTC 488
| |||||| || ||| || | ||||||| ||| ||| ||||||| |||||| || | |
Sbjct 328 ACCATTGG-GTTCGAAGGTGGC-AAAGATGGTCCCCATGGGGATAAACCATTCCATAGCC 385
Query 489 CTAACCCTTGGCCTGA-TGCTGATGTTTTACCTGGTTGGCGAGAAACAATGGAGAAATAT 547
| ||| ||||||| | | |||| ||||| || || ||||| || || ||||||||||||
Sbjct 386 CCAACATTTGGCCTAACT-CTGACGTTTTGCCCGGATGGCGGGAGACCATGGAGAAATAT 444
Query 548 CATCAAGAAGCATTGAGGGTTTCTATGGCTATTGCAAGACTTTTGGCGTTAGCACTTGAC 607
||||||||||||||||||||| || | ||||||| ||| | |||| || || || |||
Sbjct 445 TATCAAGAAGCATTGAGGGTTTGTAAGTCTATTGCGAGAATAATGGCTTTGGCGCTCGAC 504
Query 608 TTGGATGTGGGA-TACTTT-GATAGGA-CGGAGATGCTTGGAAAACCTATTGCA-ACTAT 663
|||||||| ||| || ||| ||| | |||||||||| ||||| || |||||| | |||
Sbjct 505 TTGGATGT-GGATTA-TTTCAATA-CACCGGAGATGCTGGGAAATCCAATTGCAGA-TAT 560
Query 664 GCGAC-TGTTGCGGTATCAAGGGATTTCTGATCCTTCGAAAGGAATATATGCATGTGGAG 722
| | | |||| | ||| |||||| |||||||| |||||||||||||||||||||||||
Sbjct 561 G-GTCTTGTTTCACTATGAAGGGAAGTCTGATCCCTCGAAAGGAATATATGCATGTGGAG 619
Query 723 CACATTCTGACTTCGGAATGATGACTCTGTTAGCCACTGATGGTGTAATGGGACTCCAGA 782
|||||||||| |||||||||||| |||| ||||| |||||||||||||||||||| ||||
Sbjct 620 CACATTCTGATTTCGGAATGATGTCTCTCTTAGCAACTGATGGTGTAATGGGACTTCAGA 679
Query 783 TATGCAAAGATAA-GAACGCGATGCCGCAGAAGTGGGAATATGTACCGCCGATTAAAGGA 841
| ||||| ||||| || || |||||| || |||||||||||| | || | |||||||||
Sbjct 680 TTTGCAAGGATAAAGA-CGTGATGCCTCAAAAGTGGGAATATATTCCATCAATTAAAGGA 738
Query 842 GCATTTATAGTGAATCTTGGCGATATGCTGGAACGTTGGAGCAATGGCTTTTTTAAATCC 901
|| | ||| ||||||||||| ||| ||||||| |||||||| ||||||| ||| || ||
Sbjct 739 GCCTATATTGTGAATCTTGGTGATCTGCTGGAGCGTTGGAGTAATGGCTATTTCAAGTCG 798
Query 902 ACGTTGCATCGGGTTCTTGGAAACGGTCAGGAACGATATTCTATTCCATTCTTTGTGGAA 961
|| || |||||||| ||||| || || || || |||||||||||||||||||| || ||
Sbjct 799 ACATTACATCGGGTACTTGGGAATGGGCAAGACCGATATTCTATTCCATTCTTCCTGAAA 858
Query 962 CCAAATCATGACTGTCTCGTGGAGTGTCTCCCAACCTGCAAGTCGGAAAGCGAGCTTCCT 1021
|| | |||||||||| | | |||||||| || |||||| |||| |||| | | |||||
Sbjct 859 CCGAGTCATGACTGTATAATAGAGTGTCTTCCTACCTGCCAGTCCGAAAACAACCTTCCC 918
Query 1022 AAATATCCACCGATCAAATGTTCGACATACCTCACCCAGCGTTACGAGGAAACACATGC 1080
||||||||| ||||||||||||| || ||| || |||| |||||| | | | |||||||
Sbjct 919 AAATATCCAGCGATCAAATGTTCAACGTACATCTCCCAACGTTACAAAGCAGCACATGC 977
> Ahg359346 jgi|Araly1|359346|fgenesh1_pg.C_scaffold_132000003
Length=789
Score = 507 bits (274), Expect = 1e-142
Identities = 565/702 (80%), Gaps = 34/702 (5%)
Strand=Plus/Plus
Query 139 CATGAAAGTTTCAT-CTCTTAATTGTATCGATCTAGCCAACGACGATCTTAATCATTCTG 197
||| |||||||| | | |||| ||| || ||||| | |||| | ||||| |||| || |
Sbjct 36 CATCAAAGTTTC-TGCCCTTACTTGCATAGATCTCGACAACTCCAATCTTCATCAATCAG 94
Query 198 TTGTTTCCCTCAAACAGGCATGTTTGGATTGTGGATTTTTCTATGTGATCAATCATGGGA 257
||||| ||||| ||||||||| | ||| |||||||||||||||| || |||||||| |
Sbjct 95 CTGTTTTACTCAAGCAGGCATGTCTCGATAGTGGATTTTTCTATGTCATTAATCATGGTA 154
Query 258 TAAGCGAAGAGTTCATGGACGATG-TTTTCGAGCAGAGCAAGAAGCTTTTTGCTCTTCCT 316
||||||| || | | |||||| | |||| || |||||||||||| ||||||||||||||
Sbjct 155 TAAGCGAGGAACTGAAGGACGAGGCTTTT-GAACAGAGCAAGAAGTTTTTTGCTCTTCCT 213
Query 317 TTAGAAGA-AAAGATGAAAGTGTTGAGAAACGAAAAGCATCGAGGCTATACACC-TGTTC 374
|| || || ||| |||||||| |||||||| |||||| ||||||||||| |||| | |||
Sbjct 214 TTGGAGGAGAAA-ATGAAAGTCTTGAGAAATGAAAAGTATCGAGGCTATGCACCAT-TTC 271
Query 375 TTGATGAACTTTTAGATCCC-AAGAATCAAAT-CAATGGGGATC-ACAAAGAGGGTTATT 431
||| || ||||| ||| || || ||| | | | ||||| | |||||||||||| ||
Sbjct 272 ACGATTCTCTCTTAGA-CCCTAAAAACCAATTCCGA-GGGGA-CTACAAAGAGGGTT-TT 327
Query 432 A-CATTGGAATT-GAA-GTTCCTAAAGATGATCCTCATTGGGATAAGCCATTCTATGGTC 488
| |||||| || ||| || | ||||||| ||| ||| ||||||| |||||| || | |
Sbjct 328 ACCATTGG-GTTCGAAGGTGGC-AAAGATGGTCCCCATGGGGATAAACCATTCCATAGCC 385
Query 489 CTAACCCTTGGCCTGA-TGCTGATGTTTTACCTGGTTGGCGAGAAACAATGGAGAAATAT 547
| ||| ||||||| | | |||| ||||| || || ||||| || || ||||||||||||
Sbjct 386 CCAACATTTGGCCTAACT-CTGACGTTTTGCCCGGATGGCGGGAGACCATGGAGAAATAT 444
Query 548 CATCAAGAAGCATTGAGGGTTTCTATGGCTATTGCAAGACTTTTGGCGTTAGCACTTGAC 607
||||||||||||||||||||| || | ||||||| ||| | |||| || || || |||
Sbjct 445 TATCAAGAAGCATTGAGGGTTTGTAAGTCTATTGCGAGAATAATGGCTTTGGCGCTCGAC 504
Query 608 TTGGATGTGGGA-TACTTT-GATAGGA-CGGAGATGCTTGGAAAACCTATTGCA-ACTAT 663
|||||||| ||| || ||| ||| | |||||||||| ||||| || |||||| | |||
Sbjct 505 TTGGATGT-GGATTA-TTTCAATA-CACCGGAGATGCTGGGAAATCCAATTGCAGA-TAT 560
Query 664 GCGAC-TGTTGCGGTATCAAGGGATTTCTGATCCTTCGAAAGGAATATATGCATGTGGAG 722
| | | |||| | ||| |||||| |||||||| |||||||||||||||||||||||||
Sbjct 561 G-GTCTTGTTTCACTATGAAGGGAAGTCTGATCCCTCGAAAGGAATATATGCATGTGGAG 619
Query 723 CACATTCTGACTTCGGAATGATGACTCTGTTAGCCACTGATGGTGTAATGGGACTCCAGA 782
|||||||||| |||||||||||| |||| ||||| |||||||||||||||||||| ||||
Sbjct 620 CACATTCTGATTTCGGAATGATGTCTCTCTTAGCAACTGATGGTGTAATGGGACTTCAGA 679
Query 783 TATGCAAAGATAA-GAACGCGATGCCGCAGAAGTGGGAATAT 823
| ||||| ||||| || || |||||| || ||||||||||||
Sbjct 680 TTTGCAAGGATAAAGA-CGTGATGCCTCAAAAGTGGGAATAT 720
> Ahg937350 jgi|Araly1|937350|scaffold_501541.1
Length=533
Score = 213 bits (115), Expect = 3e-54
Identities = 221/271 (82%), Gaps = 12/271 (4%)
Strand=Plus/Plus
Query 576 CTATTGCAAGACTTTTGGCGTTAGCACTTGACTTGGATGTGGGA-TACTTT-GATAGGA- 632
||||||| ||| | |||| || || || ||||||||||| ||| || ||| ||| |
Sbjct 7 CTATTGCGAGAATAATGGCTTTGGCGCTCGACTTGGATGT-GGATTA-TTTCAATA-CAC 63
Query 633 CGGAGATGCTTGGAAAACCTATTGCA-ACTATGCGAC-TGTTGCGGTATCAAGGGATTTC 690
|||||||||| ||||| || |||||| | |||| | | |||| | ||| |||||| ||
Sbjct 64 CGGAGATGCTGGGAAATCCAATTGCAGA-TATG-GTCTTGTTTCACTATGAAGGGAAGTC 121
Query 691 TGATCCTTCGAAAGGAATATATGCATGTGGAGCACATTCTGACTTCGGAATGATGACTCT 750
|||||| |||| |||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 122 TGATCCCTCGATAGGAATATATGCATGTGGAGCACATTCTGATTTCGGAATGATGTCTCT 181
Query 751 GTTAGCCACTGATGGTGTAATGGGACTCCAGATATGCAAAGATAA-GAACGCGATGCCGC 809
||||| |||||||||||||||||||| ||||| ||||| ||||| || || || ||| |
Sbjct 182 CTTAGCAACTGATGGTGTAATGGGACTTCAGATTTGCAAGGATAAAGA-CGTGAAGCCTC 240
Query 810 AGAAGTGGGAATATGTACCGCCGATTAAAGG 840
| |||||||||||| | || | ||||||||
Sbjct 241 AAAAGTGGGAATATATTCCATCAATTAAAGG 271
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50627233776
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5