BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G35340.1 Length=1115 Score E Sequences producing significant alignments: (Bits) Value Ahg922683 jgi|Araly1|922683|scaffold_103964.1 1415 0.0 > Ahg922683 jgi|Araly1|922683|scaffold_103964.1 Length=923 Score = 1415 bits (766), Expect = 0.0 Identities = 868/919 (94%), Gaps = 0/919 (0%) Strand=Plus/Plus Query 53 CTGCGATTCACATTTTCCCGATGACTTCCACTCTAATCTCCTCAAACCTCTCTTCCTCTT 112 ||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||| Sbjct 1 CTGCGATTCACATTTTCCCGATGACTTCCGCTTTAATCTCCTCAAATCTCTCTTCCTCTT 60 Query 113 TCTTCCCAACCCAAAATATCCACCGAATTCGAATCCCGACGACTTCAATTCCCGGAAGTT 172 ||||||| || ||||| ||||||| |||||||||||| ||||||||||||||||| ||| Sbjct 61 TCTTCCCTACTAAAAATCTCCACCGGATTCGAATCCCGGCGACTTCAATTCCCGGAGGTT 120 Query 173 TCAACATTCGCGCACGCCGTTCAAAAATCGTCGCCAAATCTCTCGATCTTCCTCTTCTTC 232 |||||||||||||||||||||||||||||||||| ||||| ||| ||||||| ||||||| Sbjct 121 TCAACATTCGCGCACGCCGTTCAAAAATCGTCGCGAAATCACTCAATCTTCCACTTCTTC 180 Query 233 CTTTTAGCATGAGCGAGGTTCTTGTACCAACGGAGAGTAAAACTTTGCATTTATATGAAG 292 | || |||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 181 CCTTCAGCATGAGCGAGGTTCTTGTACCAACGGAGAGTACAACTTTGCATTTGTATGAAG 240 Query 293 CTAGGTACTTAGCTTTACTCGAAGAGTCTATGAAGAGAAAGAAGAATATGTTTGTTCATT 352 | ||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||| Sbjct 241 CAAGGTACTTAGCTTTACTTGAAGAGTCGATGAAGAGGAAGAAGAATATGTTTGTTCATT 300 Query 353 TCATTCTAGATCCTATTTCGATTAGTGAGACTGCAACAGAAGCTTCTTTTGCTGCTAGAT 412 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TCATTCTGGATCCTATTTCGATTAGTGAGACTGCAACAGAAGCTTCTTTTGCTGCTAGAT 360 Query 413 ATGGTTGCTTGGTACTTATTGAAAACGTTGAGAGATTGGATGTTGGTGCACTTGTTTCGA 472 |||| || |||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 361 ATGGATGTTTGGTACTTATTGAAAACGTTGAGAGATTGGATGTTGGCGCGCTTGTTTCGA 420 Query 473 TAAGAGGCGCGGGTCGTGTGAAGATTTCGAGGTTTTTAGGGGCAGATCCTTACTTGTCCG 532 ||||||| || |||||||||||||||||| |||||||||||||||||||||| ||||||| Sbjct 421 TAAGAGGTGCTGGTCGTGTGAAGATTTCGCGGTTTTTAGGGGCAGATCCTTATTTGTCCG 480 Query 533 GAGAGGTCAGACCAATACAGGATCGTATGAATTATGAGAGCAGCAATGAATTAACCTCAA 592 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 481 GAGAGGTCAGACCAATACAGGATCGTGTGAATTATGAGAGCAGCAATGAATTAACCTCAA 540 Query 593 AAATCTCCCAGCTGAAGGAATCTATTAAAAATCTTAACAGCTTGGAGATCAAACTTAAGG 652 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 541 AAATCTCCCAGCTGAAGGAATCTATTAAGAATCTTAACAGCTTGGAGATCAAACTTAAGG 600 Query 653 CTCCAGCAGACTCGCCGCTACAAACTCGTCTCATTAACTCTCTAAACTGGGCTGAAGATG 712 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 CTCCAGCAGACTCGCCGCTACAAACTCGTCTCATTAACTCTCTAAACTGGGCTGAAGATG 660 Query 713 AGCCGCCGGTCGACTTTGACGAATCATTCGTACCTTCTCTCCAAGAACGTCTATCATTTT 772 |||||||||| || ||||||||||||||| ||||||| ||||||||||||||||| |||| Sbjct 661 AGCCGCCGGTTGAGTTTGACGAATCATTCTTACCTTCCCTCCAAGAACGTCTATCCTTTT 720 Query 773 CAGCATTTCAACCCATCTCTGGATCGACGAAGTCGGAACTATCAAGGTTACAACAAGAGA 832 | |||||||||||||| || |||||||| ||||||||||||||||||||||||||||||| Sbjct 721 CTGCATTTCAACCCATTTCCGGATCGACAAAGTCGGAACTATCAAGGTTACAACAAGAGA 780 Query 833 AAATAAAAGCAATGGATATGAAAGATACAATAGAGAGATTAGAACTCTCAATGGGACTCA 892 || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 781 AATTAAAAGCAATGGATATGAAAGATACAATAGAGAGGTTAGAACTCTCAATGGGACTCA 840 Query 893 TAAAGGAGAACATCTCCTCAATTGCAGCCAAACTCGCTATCCAATCCTTGGATATTCGCT 952 ||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 841 TAAAGGAGAACATTTCCTCAATTGCAGCCAAACTCGCCATCCAATCCTTGGACATTCGCT 900 Query 953 AACCACTAGACTATACAAT 971 || | || |||||||||| Sbjct 901 AATCGTTACACTATACAAT 919 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41553979530 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5