BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G35420.2 Length=1251 Score E Sequences producing significant alignments: (Bits) Value Ahg473673 jgi|Araly1|473673|fgenesh2_kg.1__3627__AT1G35420.1 1476 0.0 > Ahg473673 jgi|Araly1|473673|fgenesh2_kg.1__3627__AT1G35420.1 Length=1040 Score = 1476 bits (799), Expect = 0.0 Identities = 968/1047 (92%), Gaps = 22/1047 (2%) Strand=Plus/Plus Query 52 GGACCATATTGATTCTAGAAAGATACTTACAATGGCTGCATCGTTAGCCTCTCTTTCCTC 111 |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct 1 GGACCATATTGATTCTAGAAAGATACATACAATGGCTGCGTCGTTAGCCTCTCTTTCCTC 60 Query 112 CTTAGCTAAAGCCGGAGCACCACGGTCACTGTTCAACCGCCATGGCAGCCACCGCCTTCC 171 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 61 CTTAGCTAAAGCCGGAGCACCACGGTCACTATTCAACCGCCATGGCAGCCACCGCCTTCC 120 Query 172 TCCTCCACAAAT-CATACCTCTTGCTTCCTCTATCATGTTTTGTCAGATCAAGAAACATA 230 |||||| | ||| | | |||||||||| | | || | | |||||||||||| Sbjct 121 TCCTCCGCGAATCCCT-CCTCTTGCTT-C-C--TC--------T--G-TCAAGAAACATA 164 Query 231 TCACGACGAGCTTCTATAGGAGAGGAAGTTCTCTGAAGAACATTTATGCCCTCGAGACCT 290 ||||||| ||||||| ||| | ||| ||| |||||||||||| |||||||||||||| Sbjct 165 TCACGACAAGCTTCTCGCGGACACAAAGGTCTATGAAGAACATTTCTGCCCTCGAGACCT 224 Query 291 CTGACGGCGCCATTAACGTGGAGG-T--CGATGATGATGAGGAAGAAGAAGCGTGTGAGC 347 |||||||| || |||||||||||| | ||||| |||||||||||||||||||||||||| Sbjct 225 CTGACGGCACCGTTAACGTGGAGGTTGACGATGGTGATGAGGAAGAAGAAGCGTGTGAGC 284 Query 348 TTGTTAACGGAACAGAAGTGTCCGTTGACGGTGTTGAAGGTTATCTTTTAACGGCGGTGA 407 |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| | Sbjct 285 TTGTTAACGGAACAGAAGTGTCTGTTGATGGTGTTGAAGGTTATCTTTTAACGGCGGTAA 344 Query 408 AGAACAATAACGGAACTGGATTGCTTCTACTCTCTGATGTCTTTGGCTTTCAAGATTCAG 467 |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 345 AGAACAATAACGGAACTGGATTGCTTCTTCTCTCTGATGTCTTTGGATTTCAAGATTCAG 404 Query 468 CTACACGCGATTTCGCTTACCGTGTGGCTTGCAATGGCTATAACGTTCTTGTCCCGGACT 527 | ||||||||||||||||||||||| |||||||||||||| || |||||||||||||||| Sbjct 405 CCACACGCGATTTCGCTTACCGTGTCGCTTGCAATGGCTACAATGTTCTTGTCCCGGACT 464 Query 528 TGTTTCGTGGAGATCCATGGTCGAAAAACCGACCAAAGTCCGAATACGAGGAATGGAGAA 587 | ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| Sbjct 465 TATTTCGTGGAGATCCATGGTCGGAAAACCGACCAAAGTCCGAATTCGAGGAATGGAGAA 524 Query 588 GAGGACATGACCCTAACCGTATCAGACAAGACACTACTACCTTCACAAAATGGATGGTTG 647 ||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 525 GAGGACACGACCCGAACCGTATCAGACAAGACACTACTAGCTTCACAAAATGGATGGTTG 584 Query 648 AGGAATTTGCAGCGGCTGGAATCTCCAAGAAGCTAGGAGTGATGGGGTTCTGTTTTGGCG 707 ||||||||||||||||||| |||||||||||||||||||| |||||||||||||| || | Sbjct 585 AGGAATTTGCAGCGGCTGGGATCTCCAAGAAGCTAGGAGTAATGGGGTTCTGTTTCGGTG 644 Query 708 GTGGACGTGTGGTTGACGTGTTAGCCACGGATGAGAGCGGTTACTTTAGCACCGGTGTCT 767 |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| Sbjct 645 GTGGACGTGTGGTTGACGTGTTAGCCACGGATGAGAATGGTTACTTCAGCACCGGTGTCT 704 Query 768 CGTTCTACGGTACGAGAATAGACTCGGCGGTGGCGGGAGATGTGAAAGTGCCAGTCTTGT 827 ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 705 CGTTCTATGGTACGCGAATAGACTCGGCGGTGGCGGGAGATGTGAAAGTGCCAGTCTTGT 764 Query 828 TTATTGCTGGAGATAGAGACCCGCTTTGTGAAGTGAAGGGTTTGTATGAAATTGAGGAGA 887 ||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||| Sbjct 765 TTATTGCTGGAGACAGAGACCCGCTTTGTGAAGTGAAGGGTTTGTACGAAGTTGAGGAGA 824 Query 888 AGATTGGTGAA-GGTTCAAAGGTTGTTGTGTATGAAGGAAGAGGTCACGGCTTTGTTCAC 946 ||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||| Sbjct 825 AGATTGGTGAAAGGA-CAAAGGTTGTTGTGTATGAAGGAAGAGGTCACGGTTTTGTTCAC 883 Query 947 CGGCCCGAGACACCCGAAGATGATCGAGACGCTGAGGAAGCGTTTGCTCTCATGAGAAAT 1006 ||||| |||||||| ||||||||| ||||||| ||||| ||||||||||| ||||| ||| Sbjct 884 CGGCCGGAGACACCGGAAGATGATAGAGACGCGGAGGAGGCGTTTGCTCTTATGAGGAAT 943 Query 1007 TGGTTACATCATCATTTGATTTGAAGCCAATTGTTTTTCTCTACTCTTTGTACATCCAAG 1066 ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| Sbjct 944 TGGTTACATCATCATTTGATTTGAAACCAATTATTTTTCTCTACTCTTTGTACATCCAAG 1003 Query 1067 TTAAAATAAAACTCGGATTCTAGTAAA 1093 ||||||||||||||||||||||||||| Sbjct 1004 TTAAAATAAAACTCGGATTCTAGTAAA 1030 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46738696242 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5