BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G35470.2 Length=1696 Score E Sequences producing significant alignments: (Bits) Value Ahg913410 jgi|Araly1|913410|Al_scaffold_0001_3664 1171 0.0 > Ahg913410 jgi|Araly1|913410|Al_scaffold_0001_3664 Length=1455 Score = 1171 bits (634), Expect = 0.0 Identities = 702/735 (96%), Gaps = 4/735 (1%) Strand=Plus/Plus Query 738 GGGATATGAAGCATCAGAGAGGAATAAGCAACAATTGGCTATTGAAAAAATATCCATACC 797 ||||||||||||| |||||||||||||||||||| | |||| |||||| |||||| ||| Sbjct 723 GGGATATGAAGCAACAGAGAGGAATAAGCAACAAATAACTATCGAAAAACTATCCACACC 782 Query 798 TCCAAACATTGGTTATGGGCTTGTCAAGACCTACCTGCTACACTATGGGTATGAGGAGAC 857 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 783 TCCAAACATTGGTTATGGGCTTGTAAAGACCTACCTGCTACACTATGGGTATGAGGAGAC 842 Query 858 ACTCGATGCTTTCAACCTTGCTACTAAAAATACAGTTCCTCCAATTCATATAGATCAAGA 917 |||| |||||||||||||||||||| ||| ||||||||||||||| |||||||||||||| Sbjct 843 ACTCAATGCTTTCAACCTTGCTACTCAAACTACAGTTCCTCCAATCCATATAGATCAAGA 902 Query 918 AAATGCTATTGACGAGGATGATTCATCCTATGCTTTGAAACAGAGAAAGAATCTTAGACA 977 |||||||||||| ||||||||||| || ||||| |||||||||||||||||| ||||||| Sbjct 903 AAATGCTATTGATGAGGATGATTCCTCATATGCCTTGAAACAGAGAAAGAATTTTAGACA 962 Query 978 GCTTGTTAGGAATGGTGAGATTGATACTGCTTTGGCGGAACTCCAAAAGTTGTATCCCCA 1037 ||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||| Sbjct 963 GCTTGTTAGGAATGGTGAGATTGATACTGCTCTGGCGGAACTCCGAAATTTGTATCCCCA 1022 Query 1038 AATTGTACAGGACGATAAATCTGTAGTTTGCTTCCTCCTTCACTGTCAAAAGTTTATTGA 1097 |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1023 AATTGTACAGGATGATAAATCTGTAGTTTGCTTCCTCCTTCAATGTCAAAAGTTTATTGA 1082 Query 1098 ATTAGTACGGGTTGGAAAACTTGAAGAAGGTGTGAACTATGGCAGACTCGAGTTAGCTAA 1157 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1083 ATTAGTACGGGTTGGAAAACTTGAAGAAGGTGTGAAGTATGGCAGACTCGAGTTAGCTAA 1142 Query 1158 ATTTGTTGGGTTAACTGGATTTCAAGATATAGTCGAGGACTGCTTTGCTTTGCTCGCGTA 1217 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| Sbjct 1143 ATTTGTTGGGTTAACTGGATTTCAAGATATAGTCGAGGACTGCTTTGCTTTACTCGTGTA 1202 Query 1218 TGAAAAGCCTGAGGAATCATCGGTCT-GGTATTTCCTAGAAGACTCACAGAGGGAATTAG 1276 |||||||||||||||||||||||| | ||||||||||||||||||| ||||||||| ||| Sbjct 1203 TGAAAAGCCTGAGGAATCATCGGT-TGGGTATTTCCTAGAAGACTCGCAGAGGGAACTAG 1261 Query 1277 TGGCTGATGCGGTGAATGCAGCAATACTATCAACAAATCCAAATAAGAAAGATGTGCAGA 1336 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1262 TGGCTGATGCGGTGAATGCAGCAATACTATCAACAAATCCAAATAAGAAAGATGTGCAGA 1321 Query 1337 GAAGCTGTCACTTGCAATCCCATCTAGAGAAACTGCTAAGACAGTTAACCGTGTGCTGTT 1396 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1322 GAAGCTGTCACTTGCAATCCCATCTAGAGAAACTGCTAAGACAGTTAACCGTGTGCTGTT 1381 Query 1397 TAGAAAGGCGGTCACTGAATGGAGACCAAGGTGAAACATTCCGGCTTCGAC-ATGTTCTT 1455 | |||||||||||||||| ||||||||||||||||||||||||||||| || |||||||| Sbjct 1382 TGGAAAGGCGGTCACTGAGTGGAGACCAAGGTGAAACATTCCGGCTTC-ACCATGTTCTT 1440 Query 1456 AACAACAACAGATAA 1470 ||||||||||||||| Sbjct 1441 AACAACAACAGATAA 1455 Score = 1083 bits (586), Expect = 0.0 Identities = 645/674 (96%), Gaps = 2/674 (0%) Strand=Plus/Plus Query 67 ATGAACTCTTCACCACCACCGGCGAATTCCGCCAACGGCGATACAACCAACAACGGCGAG 126 |||||||||||||| || ||||||||||||||||||||||||||||||||||||| || | Sbjct 1 ATGAACTCTTCACCGCCGCCGGCGAATTCCGCCAACGGCGATACAACCAACAACGTCGTG 60 Query 127 AACGGTCAAGATCTGAACTTAAACTTCTTAGACAAGATTCGTCTCTCCGCTAAACGAGAT 186 ||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||| Sbjct 61 AACGGTCAAGATCTGAACTTAAACTTCTTGGACAAGATTCGTCTCTCCGCGACACGAGAT 120 Query 187 GCGAAGGAAGACGAAGGAGAAGAATTACCGACGGAG-TTGAATACGATCAATAGCGCCGG 245 ||||||||||||||||||||||| |||||||||||| || || ||||||||||||||||| Sbjct 121 GCGAAGGAAGACGAAGGAGAAGATTTACCGACGGAGCTT-AACACGATCAATAGCGCCGG 179 Query 246 CGGATTTCTTGTGGTTTCTCCTGATAAGCTTTCCGTGAAGTACACGAATACGAATCTACA 305 ||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 180 CGGGTTTCTTGTGGTTTCTCCGGATAAGCTTTCCGTGAAGTACACTAATACGAATCTACA 239 Query 306 TGGTCACGATGTTGGTGTTGTTCAAGCTAATAAACCTGCTCCGATCAAGTGTCTTACTTA 365 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 TGGTCACGATGTTGGTGTTGTTCAAGCTAATAAACCTGCTCCGATCAAGTGTCTTACTTA 299 Query 366 CTACTTTGAGATTTTTGTTAAAGATTCTGGTATTAAAGGACAAATTGCTATTGGTTTTAC 425 |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 300 CTACTTTGAGATTTTTGTTAAAGATTCTGGGATTAAAGGTCAAATTGCTATTGGTTTTAC 359 Query 426 TAAGGAAAGCTTCAAAATGCGTAGACAACCTGGATGGGAAGTGAACAGCTGTGGATATCA 485 ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 360 TAAGGAAAGCTTCAAAATGCGGAGACAACCTGGATGGGAAGTGAACAGCTGTGGCTATCA 419 Query 486 TGGGGATGATGGATACCTATATCGTGGACAGGGAAAAGGTGAACCTTTTGGTCCAAAGTT 545 |||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||| Sbjct 420 TGGGGATGATGGATTCCTATATCGTGGACAGGGGAAAGGTGAACCTTTTGGTCCGAAGTA 479 Query 546 TACAAAAGATGATGCAGTTGGCGGTGGTATAAACTACGCTTCTCAGGAGTTCTTTTTCAC 605 ||||||||||||| |||||||||||||||||||||| ||||| || |||||||||||||| Sbjct 480 TACAAAAGATGATACAGTTGGCGGTGGTATAAACTATGCTTCGCAAGAGTTCTTTTTCAC 539 Query 606 TAAAAACGGAACTATTGTTGGGAAAATCCCCAAGGACATAAGAGGTCATCTATTCCCTAC 665 |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 540 TAAAAACGGAGCTATTGTTGGGAAAATCCCTAAGGACATAAGAGGTCATCTATTCCCTAC 599 Query 666 TGTAGCTGTACATAGCCAAAATGAGGAGGTATTAGTCAATTTTGGGAAGAAGAAATTTGC 725 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 600 TGTAGCTGTACATAGCCAAAATGAGGAGGTATCAGTCAATTTTGGGAAGAAGAAATTTGC 659 Query 726 TTTCGATATTAAGG 739 |||||||||||||| Sbjct 660 TTTCGATATTAAGG 673 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63610709150 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5