BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G35560.1
Length=1410
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473685 jgi|Araly1|473685|fgenesh2_kg.1__3639__AT1G35560.1 1805 0.0
> Ahg473685 jgi|Araly1|473685|fgenesh2_kg.1__3639__AT1G35560.1
Length=1350
Score = 1805 bits (977), Expect = 0.0
Identities = 1260/1388 (91%), Gaps = 54/1388 (4%)
Strand=Plus/Plus
Query 39 CAAgtttgtttgtttgtttattccattttcttgtgtgtttttttCCCCATAATTTATAAA 98
|||||||||||||| |||||||||||||| |||||| ||||||| |||||||||||||||
Sbjct 1 CAAGTTTGTTTGTTAGTTTATTCCATTTTTTTGTGT-TTTTTTTTCCCATAATTTATAAA 59
Query 99 TTTTATAAGCAATATGGAGTCCCACAACAACAACCAGAGCAACAACAACACCACTGGTTC 158
|||||||| | | ||||||| || | |||||||||||||||||||
Sbjct 60 TTTTATAATC-A-ATGGAGT-------------CC----C-ACAACAACACCACTGGTTC 99
Query 159 GGCCCATCTGGTCCCATCCATGGGACCAATCTCCGGTTCAGTCTCATTAACCACCACTGC 218
||||||||||||||||| ||||||||||||||||||||||| |||| ||||| ||
Sbjct 100 GGCCCATCTGGTCCCATTCATGGGACCAATCTCCGGTTCAG------TAACAACCACCGC 153
Query 219 TCCAAACTCCACTACCACCACCGTCACCGCCGCTAAAACACCCGCAAAACGACCGTCCAA 278
|| ||| |||||||||||||||||| | |||||||||||||| || |||||||| |||||
Sbjct 154 TCAAAATTCCACTACCACCACCGTCTCGGCCGCTAAAACACCGGCCAAACGACCCTCCAA 213
Query 279 GGACCGTCACATCAAAGTAGACGGACGTGGCCGGAGGATACGTATGCCGGCTATCTGCGC 338
|||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 214 GGACCGCCACATCAAAGTAGACGGTCGCGGCCGGAGGATACGTATGCCGGCTATCTGCGC 273
Query 339 AGCACGTGTCTTCCAACTAACACGTGAGTTACAACACAAATCGGACGGCGAGACTATAGA 398
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 274 GGCGCGTGTCTTCCAACTAACACGTGAGTTACAACACAAATCAGACGGCGAGACTATAGA 333
Query 399 GTGGCTGCTCCAACAAGCGGAGCCAGCTATCATCGCAGCCACCGGAACTGGAACCATACC 458
|||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 334 GTGGCTGCTCCAACAAGCGGAGCCGGCTATCATCGCCGCCACCGGAACCGGAACCATACC 393
Query 459 GGCGAATATCTCTACTTTGAACATCTCTCTTCGAAGCAGTGGCTCTACTCTTTCAGCTCC 518
|||||||||||||||||||||| ||||||| ||||| ||||||||||| || ||||||||
Sbjct 394 GGCGAATATCTCTACTTTGAACGTCTCTCTCCGAAGTAGTGGCTCTACCCTCTCAGCTCC 453
Query 519 ACTGTCTAAATCTTTCCACATGGGAAGAGCGGCTCAAAACGCTGCCGTTTTTGGGTTCCA 578
|||||||||||||||| |||| |||||||| |||||||||||||||||||| ||||||||
Sbjct 454 ACTGTCTAAATCTTTCAACATCGGAAGAGCTGCTCAAAACGCTGCCGTTTTCGGGTTCCA 513
Query 579 GCAACAGCTTTATCATCCTCATCATATCACGACAGAttcttcttcttcttctcttcCCAA 638
|||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 514 GCAACAGCTTTATCCTCCTCATCACATCATGACAGATTCTTCTTCTTCTTCTCTTCCCAA 573
Query 639 AACATTCCGTGAAGAAGATCTTTTTAAAGATCCTAATTTTCTAGATCAAGAACCCGGTTC 698
|| |||||||||||||||||| |||||||||||||||| || |||||||||||||||||
Sbjct 574 AATATTCCGTGAAGAAGATCTCTTTAAAGATCCTAATTCCCTCGATCAAGAACCCGGTTC 633
Query 699 AAGATCACCTAAACCGGGATCCGAAGCTCCTGATCAAGATCCGGGTTC-GACCCGGTCAA 757
|||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 634 AAGATCGCCTAAACCGGGATCCGAAGCTCCTGATCAAGATCCGGG-TCTAACCCGGTCAA 692
Query 758 GAACACAAAATATGATACCGCCGATGTGGGCACT---AGCGCCAACGCCAGCCTCCACAA 814
|||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 693 GAACACAAAACATGATACCGCCGATGTGGGCAGTGGCGGCGCCAACGCCAGCCTCCACAA 752
Query 815 ACGGAGGTAGTGCTTTTTGGATGTTACCAGTCGGAGGAGGAGGAGGTCCGGCTAACGTTC 874
||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 753 ACGGAGGTAGTGCGTTTTGGATGTTACCAGTC---GGAGGAGGAGGTCCGGCCAACGTTC 809
Query 875 AGGATCCATCACAGCACATGTGGGCGTTTAATCCGGGTCATTACCCGGGTCGAATCGGGT 934
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 810 AGGATCCATCACAGCACATGTGGGCGTTTAATCCGGGTCATTACCCGGGTCGAATCGGGT 869
Query 935 CGGTTCAGCTAGGGTCTATGTTAGTGGGAGGTCAACAGTTAGGGTTAGGTGTTGCAGAAA 994
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 870 CGGTTCAGCTAGGGTCTATGTTAGTGGGAGGTCAACAATTAGGGTTAGGTGTTGCTGATA 929
Query 995 ATAACAATTTGGGGCTATTTTCCGGCGGAGGAGGAGACGGTGGTCGGGTTGGTCTCGGAA 1054
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 930 ATAACAATTTGGGGCTATTTTCCGGCGGAGGAGGAGGCGGTGGTCGGGTTGGTCTTGGAA 989
Query 1055 TGAGTCTTGAGCAAAAGCCTCAACATCAAGTGAGTGATCATGCTACTAGA-GACCAAAAT 1113
||||||| |||||||| |||||||||||||||||||||||||||||| || |||||||||
Sbjct 990 TGAGTCTAGAGCAAAAACCTCAACATCAAGTGAGTGATCATGCTACT-GAAGACCAAAAT 1048
Query 1114 CCTACTATAGATGGTTCTCCTTGAA-AGACTTCATGATTTCTTTGGTTTTTAAAAAGTGT 1172
| |||||| |||||||||||||||| |||| |||| |||| |||||||||||||||||||
Sbjct 1049 CTTACTATTGATGGTTCTCCTTGAAGAGACGTCATAATTTTTTTGGTTTTTAAAAAGTGT 1108
Query 1173 GAATGTGTGATTTATTGCAACTTTTGTTGAGGACTCCAATGTTAATATGGGTTTTAGGGT 1232
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1109 GAATGTGTGATTTATTGCAACTTTTGTTGAGGACTCCGATGTTAATATGGGTTTTAGGGT 1168
Query 1233 TGGCTTTTCGGGATTGCCAAATTGTTATTT-AAGAAAATGGATTTATTGTTTTGGTTGCA 1291
| |||||||||||||||||||||||||||| || |||||||| | || |||| ||||||
Sbjct 1169 TTGCTTTTCGGGATTGCCAAATTGTTATTTTAA-AAAATGGAAGT-TT-TTTTCGTTGCA 1225
Query 1292 T-AATA-ATTAAC-GAGTTTTGCAACTCTTTTTATTCGATGCAAAAGCATGTCACTTAA- 1347
|| | || || |||||||||||||||||||||| ||| |||||||||||||| ||
Sbjct 1226 CCAA-AGATAAAATGAGTTTTGCAACTCTTTTTATTTGATAAAAAAGCATGTCACTGAAG 1284
Query 1348 AG-GAA--A--TATAGTTGAATCTCTATGTGTAACATAATGGACAAAAGAATAAATTAAA 1402
|| ||| | ||||||||||||| ||| ||||||||||| ||||||||||| ||||||
Sbjct 1285 AGTGAAGTAAATATAGTTGAATCT--ATGGGTAACATAATGAACAAAAGAATATATTAAA 1342
Query 1403 TATTTATC 1410
||||||||
Sbjct 1343 TATTTATC 1350
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52716899080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5