BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G35670.1
Length=1757
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913433 jgi|Araly1|913433|Al_scaffold_0001_3687 2471 0.0
Ahg489809 jgi|Araly1|489809|fgenesh2_kg.6__2943__AT4G09570.1 1751 0.0
> Ahg913433 jgi|Araly1|913433|Al_scaffold_0001_3687
Length=1488
Score = 2471 bits (1338), Expect = 0.0
Identities = 1438/1488 (97%), Gaps = 0/1488 (0%)
Strand=Plus/Plus
Query 76 ATGGAGACGAAGCCAAACCCTAGACGTCCTTCAAACACAGTTCTACCATATCAAACACCA 135
|||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGAGTCGAAACCAAACCCTAGACGTCCTTCAAACACAGTTCTTCCATATCAAACACCA 60
Query 136 CGATTAAGAGATCATTACCTTCTGGGAAAAAAGCTAGGCCAAGGCCAATTTGGAACAACC 195
|||||| |||||||||||||||| || ||||||||||||||||||||||| |||||||||
Sbjct 61 CGATTACGAGATCATTACCTTCTCGGCAAAAAGCTAGGCCAAGGCCAATTCGGAACAACC 120
Query 196 TATCTCTGCACAGAGAAATCAACCTCCGCTAATTACGCCTGCAAATCGATCCCGAAGCGA 255
||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 121 TATCTCTGCACAGAGAAATCAACCTCCGCTAATTACGCCTGCAAATCAATCCCCAAACGC 180
Query 256 AAGCTCGTGTGTCGCGAGGATTACGAAGATGTATGGCGTGAGATTCAGATCATGCATCAT 315
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAGCTCGTTTGTCGCGAGGATTACGAAGATGTATGGCGTGAGATTCAGATCATGCATCAT 240
Query 316 CTCTCTGAGCATCCAAATGTTGTTAGGATCAAAGGGACTTATGAAGATTCGGTGTTTGTT 375
|||||||||||||| ||||||||| ||||||| ||||||||||| |||||||| ||||||
Sbjct 241 CTCTCTGAGCATCCTAATGTTGTTCGGATCAAGGGGACTTATGAGGATTCGGTTTTTGTT 300
Query 376 CATATTGTTATGGAGGTTTGTGAAGGTGGTGAGCTTTTTGATCGGATTGTTTCTAAAGGT 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CATATTGTTATGGAGGTTTGTGAAGGTGGTGAGCTTTTTGATCGGATTGTTTCTAAAGGT 360
Query 436 CATTTTAGTGAGCGTGAAGCTGTCAAGCTTATTAAGACGATTCTTGGTGTTGTTGAGGCT 495
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 361 CATTTTAGTGAGCGTGAGGCTGTGAAGCTTATTAAGACGATTCTTGGTGTTGTTGAGGCT 420
Query 496 TGTCATTCTCTTGGTGTTATGCATAGAGATCTCAAACCTGAGAATTTCTTGTTTGATAGT 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TGTCATTCTCTTGGTGTTATGCATAGAGATCTCAAACCTGAGAATTTCTTGTTTGATAGT 480
Query 556 CCTAAAGATGATGCTAAGCTTAAGGCTACCGATTTTGGTTTGTCTGTCTTCTATAAGCCA 615
||||| || ||||| || || || ||||||||||||||||||||||||||||||||||||
Sbjct 481 CCTAAGGAAGATGCGAAACTCAAAGCTACCGATTTTGGTTTGTCTGTCTTCTATAAGCCA 540
Query 616 GGACAATATTTATATGACGTAGTTGGAAGTCCGTACTATGTTGCACCAGAGGTGCTAAAG 675
||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct 541 GGACAATATTTATATGATGTGGTTGGAAGTCCATACTATGTTGCACCAGAGGTGCTAAAG 600
Query 676 AAATGTTATGGACCTGAAATAGATGTGTGGAGTGCTGGTGTTATCCTCTACATTTTACTC 735
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 601 AAATGTTATGGACCTGAAATAGATGTGTGGAGTGCCGGTGTTATCCTCTACATCTTACTC 660
Query 736 AGCGGTGTTCCTCCCTTCTGGGCAGAGACTGAGTCTGGAATCTTTAGACAGATATTGCAA 795
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 661 AGCGGTGTTCCTCCCTTCTGGGCAGAGACCGAGTCTGGAATCTTTAGACAGATATTGCAA 720
Query 796 GGGAAGTTAGATTTCAAATCTGACCCGTGGCCTACTATCTCAGAAGCTGCTAAAGATTTG 855
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 721 GGGAAGTTAGATTTCAAATCTGACCCATGGCCTAGTATCTCAGAAGCTGCTAAAGATTTG 780
Query 856 ATCTATAAAATGCTCGAAAGGAGCCCCAAGAAACGCATTTCTGCTCATGAAGCCTTGTGT 915
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 781 ATCTACAAAATGCTCGAAAGGAGCCCCAAGAAACGCATTTCTGCACATGAAGCCTTGTGT 840
Query 916 CACCCATGGATTGTCGATGAACAAGCAGCACCAGACAAGCCTCTTGATCCAGCAGTCTTA 975
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CACCCATGGATTGTCGATGAACAAGCAGCACCAGACAAGCCTCTTGATCCAGCAGTCTTA 900
Query 976 TCTCGTCTAAAGCAGTTTTCTCAAATGAATAAGATTAAGAAAATGGCATTACGGGTAATT 1035
|| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 901 TCACGACTAAAGCAGTTTTCTCAAATGAATAAGATTAAGAAAATGGCCTTACGGGTAATT 960
Query 1036 GCTGAGAGACTTTCAGAGGAAGAAATTGGAGGTCTGAAGGAATTGTTCAAGATGATAGAC 1095
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 961 GCTGAGAGACTTTCAGAGGAAGAAATTGGAGGTCTAAAGGAATTGTTCAAGATGATAGAC 1020
Query 1096 ACAGACAACAGCGGAACGATTACTTTTGAAGAGCTCAAAGCGGGTTTGAAGAGAGTCGGA 1155
||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1021 ACAGACAACAGTGGCACGATAACTTTTGAAGAGCTCAAAGCGGGTTTGAAGAGAGTCGGA 1080
Query 1156 TCTGAACTGATGGAATCAGAAATCAAGTCTCTCATGGATGCGGCTGATATCGACAACAGT 1215
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1081 TCTGAACTGATGGAATCAGAAATCAAGTCTCTTATGGATGCGGCTGATATCGACAACAGT 1140
Query 1216 GGTACAATAGACTACGGAGAATTCCTAGCAGCAACCTTACACATGAACAAGATGGAGAGA 1275
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1141 GGTACAATAGACTACGGAGAATTCCTAGCAGCAACATTACACATGAACAAGATGGAGAGA 1200
Query 1276 GAGGAGAATCTGGTGGCTGCATTTTCGTACTTTGACAAAGACGGAAGCGGTTATATCACC 1335
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1201 GAGGAGAATCTGGTGGCTGCATTTTCATACTTTGACAAAGACGGAAGCGGTTATATCACC 1260
Query 1336 ATCGATGAGCTTCAGTCAGCTTGCACAGAGTTTGGTCTATGTGATACACCTCTGGACGAC 1395
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 ATCGATGAGCTCCAGTCAGCTTGCACAGAGTTTGGTCTATGTGATACACCTCTGGACGAC 1320
Query 1396 ATGATCAAGGAGATTGATCTTGACAATGACGGGAAGATCGATTTCTCGGAGTTTACAGCA 1455
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1321 ATGATCAAGGAGATTGATCTTGACAATGACGGGAAGATCGATTTCTCGGAATTTACGGCA 1380
Query 1456 ATGATGAGGAAAGGAGATGGAGTTGGGAGAAGCAGAACCATGATGAAGAACTTGAACTTC 1515
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1381 ATGATGAGGAAAGGAGATGGAGTTGGGAGAAGCAGAACCATGATGAAAAACTTGAACTTC 1440
Query 1516 AACATTGCTGATGCTTTTGGAGTTGATGGTGAAAAATCTGATGACTGA 1563
|||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1441 AACATTGCTGATGCTTTTGGAGTTGATGGTCAAAAATCTGATGACTGA 1488
> Ahg489809 jgi|Araly1|489809|fgenesh2_kg.6__2943__AT4G09570.1
Length=1700
Score = 1751 bits (948), Expect = 0.0
Identities = 1300/1472 (88%), Gaps = 15/1472 (1%)
Strand=Plus/Plus
Query 76 ATGGAGACGAAGCCAAACCCTAGACGTCCTTCAAACACAGTTCTACCATATC-AAACACC 134
||||||| || |||||||||||| | || |||| || ||||| ||||| | |||||||
Sbjct 34 ATGGAGA--AA-CCAAACCCTAGAAGACCCTCAAGCAGTGTTCTTCCATA-CGAAACACC 89
Query 135 ACGATTAAGAGATCATTACCTTCTGGGAAAAAAGCTAGGCCAAGGCCAATTTGGAACAAC 194
| ||||||||||||| ||||| || || ||||||||||||||||||||||||||||||||
Sbjct 90 AAGATTAAGAGATCACTACCTCCTCGGCAAAAAGCTAGGCCAAGGCCAATTTGGAACAAC 149
Query 195 CTATCTCTGCACAGAGAAATCAACCTCCGCTAATTACGCCTGCAAATCGATCCCGAAGCG 254
|||||||| |||||||||||| | || |||| ||||| |||||||| ||||| || ||
Sbjct 150 ATATCTCTGTACAGAGAAATCATCATCTTCTAACTACGCTTGCAAATCAATCCCAAAACG 209
Query 255 AAAGCTCGTGTGTCGCGAGGATTACGAAGATGTATGGCGTGAGATTCAGATCATGCATCA 314
||||| || ||||| || || || |||||||||||||||||||||||||||||||||||
Sbjct 210 CAAGCTTGTATGTCGTGAAGACTATGAAGATGTATGGCGTGAGATTCAGATCATGCATCA 269
Query 315 TCTCTCTGAGCATCCAAATGTTGTTAGGATCAAAGGG-ACTTATGAAGATTCGGTGTTTG 373
||||||||||||||||||||| ||||| ||||| ||| ||||||||||| || || ||||
Sbjct 270 TCTCTCTGAGCATCCAAATGTGGTTAGAATCAA-GGGTACTTATGAAGACTCTGTTTTTG 328
Query 374 TTCATATTGTTATGGAGGTTTGTGAAGGTGGTGAGCTTTTTGATCGGATTGTTTCTAAAG 433
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 329 TTCACATTGTTATGGAAGTTTGTGAAGGTGGTGAGCTTTTTGATCGGATTGTTTCTAAAG 388
Query 434 GTCATTTTAGTGAGCGTGAAGCTGTCAAGCTT-ATTAAGACGATTCTTGGTGTTGTTGAG 492
| ||||||||||| ||||||||||| ||| || |||||||| ||||||||||||||||||
Sbjct 389 GGCATTTTAGTGAACGTGAAGCTGTTAAG-TTGATTAAGACTATTCTTGGTGTTGTTGAG 447
Query 493 GCTTGTCATTCTCTTGGTGTTATGCATAGAGATCTCAAACCTGAGAATTTCTTGTTTGAT 552
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 448 GCTTGTCATTCTCTTGGTGTTATGCATAGAGATCTTAAGCCTGAGAATTTCTTGTTTGAT 507
Query 553 AGT-CCTAAAGATGATGCTAAGCTTAAGGCTACCGATTTTGGTTTGTCTGTCTTCTATAA 611
||| || | ||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 508 AGTGCC-AGTGATGATGCTAAGCTTCAGGCTACGGATTTTGGTTTGTCTGTCTTCTATAA 566
Query 612 GCCAGGACAATATTTATATGACGTAGTTGGAAGTCCGTACTATGTTGCACCAGAGGTGCT 671
|||||| || ||| | ||||| ||||||||||||||||| ||||||||||| ||||| ||
Sbjct 567 GCCAGGGCAGTATCTGTATGATGTAGTTGGAAGTCCGTATTATGTTGCACCTGAGGTTCT 626
Query 672 -AAAGAAATGTTATGGACCTGAAATAGATGTGTGGAGTGCTGGTGTTATCCTCTACATTT 730
||| |||||||||||||| || ||||| |||||||| || ||||||||||| ||||| |
Sbjct 627 GAAA-AAATGTTATGGACCAGAGATAGACGTGTGGAGCGCCGGTGTTATCCTTTACATCT 685
Query 731 TACTCAGCGGTGTTCCTCCCTTCTGGGCAGAGACTGAGTCTGGAATCTTTAGACAGATAT 790
|||| || || |||||||| || |||||||| |||||||| |||||||||||||||||||
Sbjct 686 TACTAAGTGGAGTTCCTCCGTTTTGGGCAGAAACTGAGTCAGGAATCTTTAGACAGATAT 745
Query 791 TGCAAGGGAAGTTAGATTTCAAATCTGACCCGTGGCCTACTATCTCAGAAGCTGCTAAAG 850
||||||||||| ||||||| |||||||| |||||||||| ||||||||||| ||||||||
Sbjct 746 TGCAAGGGAAGATAGATTTTAAATCTGATCCGTGGCCTAGTATCTCAGAAGGTGCTAAAG 805
Query 851 ATTTGATCTATAAAATGCTCGAAAGGAGCCCCAAGAAACGCATTTCTGCTCATGAAGCCT 910
||||||| || ||||||||||| ||||||||||||||||| |||||||| || ||||| |
Sbjct 806 ATTTGATTTACAAAATGCTCGATAGGAGCCCCAAGAAACGTATTTCTGCGCACGAAGCTT 865
Query 911 TGTGTCACCCATGGATTGTCGATGAACAAGCAGCACCAGACAAGCCTCTTGATCCAGCAG 970
|||| ||||| |||||| | ||||||||||| ||||||||||||||||| ||||||||||
Sbjct 866 TGTGCCACCCTTGGATTATTGATGAACAAGCTGCACCAGACAAGCCTCTCGATCCAGCAG 925
Query 971 TCTTATCTCGTCTAAAGCAGTTTTCTCAAATGAATAAGATTAAGAAAATGGCATTACGGG 1030
|||| || || ||||||||||| || ||||||||||| || ||||||||||| ||||| |
Sbjct 926 TCTTGTCACGACTAAAGCAGTTCTCGCAAATGAATAAAATCAAGAAAATGGCCTTACGAG 985
Query 1031 TAATTGCTGAGAGACTTTCAGAGGAAGAAATTGGAGGTCTGAAGGAATTGTTCAAGATGA 1090
|||||||||||||||| || |||||||| ||||| |||||||||||||||||||| ||||
Sbjct 986 TAATTGCTGAGAGACTCTCGGAGGAAGAGATTGGTGGTCTGAAGGAATTGTTCAAAATGA 1045
Query 1091 TAGACACAGACAACAGCGGAACGATTACTTTTGAAGAGCTCAAAGCGGGTTTGAAGAGAG 1150
|||| ||||||||||| ||||| || || |||||||| || ||||| ||| |||||||||
Sbjct 1046 TAGATACAGACAACAGTGGAACAATCACCTTTGAAGAACTTAAAGCAGGTCTGAAGAGAG 1105
Query 1151 TCGGATCTGAACTGATGGAATCAGAAATCAAGTCTCTCATGGATGCGGCTGATATCGACA 1210
| |||||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||
Sbjct 1106 TTGGATCTGAACTGATGGAATCAGAAATTAAGTCTCTTATGGATGCGGCGGATATAGACA 1165
Query 1211 ACAGTGGTACAATAGACTACGGAGAATTCCTAGCAGCAACCTTACACATGAACAAGATGG 1270
|||| || |||||||| ||||| |||||||||||||| || ||||| || ||||||||||
Sbjct 1166 ACAGCGGGACAATAGATTACGGTGAATTCCTAGCAGCGACATTACATATAAACAAGATGG 1225
Query 1271 AGAGAGAGGAGAATCTGGTGGCTGCATTTTCGTACTTTGACAAAGACGGAAGCGGTTATA 1330
|||||||||||||| |||||| ||| ||||| |||||||| |||||||| ||||||||||
Sbjct 1226 AGAGAGAGGAGAATTTGGTGGTTGCGTTTTCCTACTTTGATAAAGACGGTAGCGGTTATA 1285
Query 1331 TCACCATCGATGAGCTTCAGTCA-GCTTGCACAGAGTTTGGTCTATGTGATACACCTCTG 1389
| ||||| || |||||||| || || ||||||||||||||||| ||||| || |||||
Sbjct 1286 TAACCATTGACGAGCTTCAA-CAAGCCTGCACAGAGTTTGGTCTCTGTGACACTCCTCTC 1344
Query 1390 GACGACATGATCAAGGAGATTGATCTTGACAATGACGGGAAGATCGATTTCTCGGAGTTT 1449
|||||||||||||| |||||||||||||||||||| |||| ||| |||||||| ||||||
Sbjct 1345 GACGACATGATCAAAGAGATTGATCTTGACAATGATGGGAGGATTGATTTCTCAGAGTTT 1404
Query 1450 ACAGCAATGATGAGGAAAGGAGATGGAGTTGGGAGAAGCAGAACCATGATGAAGAACTTG 1509
|| || ||||||| |||||||||||| ||||| || |||||||| |||| ||| ||||||
Sbjct 1405 ACTGCGATGATGAAGAAAGGAGATGGTGTTGGTAGGAGCAGAACTATGAGGAACAACTTG 1464
Query 1510 AACTTCAACATTGCTGATGCTTTTGGAGTTGA 1541
|||||||| || || || |||||||| |||||
Sbjct 1465 AACTTCAATATAGCCGAGGCTTTTGGTGTTGA 1496
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65934214095
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5