BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G35680.1 Length=876 Score E Sequences producing significant alignments: (Bits) Value Ahg473693 jgi|Araly1|473693|fgenesh2_kg.1__3647__AT1G35680.1 1238 0.0 Ahg922741 jgi|Araly1|922741|scaffold_104022.1 243 2e-63 > Ahg473693 jgi|Araly1|473693|fgenesh2_kg.1__3647__AT1G35680.1 Length=858 Score = 1238 bits (670), Expect = 0.0 Identities = 795/853 (93%), Gaps = 18/853 (2%) Strand=Plus/Plus Query 24 CTCTCTCAGTCGAAAACAATGGCGTCTTCTTCAGCGACGCTCTCTCTCTGCTCTACTTTC 83 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8 CTCTCTCAGGCGAAAACAATGGCGTCTTCTTCAGCGACGCTCTCTCTCTGCTCTACTTTC 67 Query 84 TCTGCTCATTGCAATGTCAATTCTCGCCGTTCTAGCACTATCCTCTGTTCTCTCTCTAAA 143 ||||||||||||||||||| ||| |||||||| || |||||||| ||||||||||||||| Sbjct 68 TCTGCTCATTGCAATGTCACTTCACGCCGTTCGAGTACTATCCTGTGTTCTCTCTCTAAA 127 Query 144 CCTTCGCTTAATTTGGCTAAACCTCTGACTGGATTTCTTTCTCCTTCCACTGCGTCGACG 203 ||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 128 CCTTCACTTAATTTGGCTAAACCTGTGTCTGGATTTCTTTCTCCTTCCACTGCGTCGACG 187 Query 204 TCTCGAACCGCATTCACCGTCGCTCCGAAATTCGCGGAATCAGTCGTCGAAGCTGAACCG 263 ||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 188 TCTCGGACCGCATTCACCGTCGCTCCTAAATTCGCTGAATCAGTCGTCGAAGCTGAACCA 247 Query 264 GAGACTACCGATATCGAAGCTGTGGTGGTTTCCGATGTTTCGGAGGTTACTGAGGAAAAA 323 || ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 248 GAAACTACCGATATCGAAGCTGTGGTGGTTTCCGATGTTTCGGAAGTTACTGAGGAGAAA 307 Query 324 GCTAAACGAGAAGAGATTTTCGCTGTTATTATGGTTGGTGGACGCCAATACATAGTGTTT 383 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 308 GCTAAACGAGAAGAGATTTTCGCTGTTGTTATGGTTGGTGGACGCCAATACATAGTGTTT 367 Query 384 CCAGGGAGATATCTCTACACTCAGAGGCTAAAAGATGCAAATGTTGATGACCAGATTGTT 443 ||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||| Sbjct 368 CCAGGGAGATATCTCTACACTCAGAGGCTGAAAGATGCAAATGTCGATGATCAGATTGTT 427 Query 444 CTCAACAAAGTGTTGCTTGTTGGAACAAAGACACACACTTACATTGGCAAGCCGGTTGTG 503 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 428 CTCAACAAAGTGTTGCTTGTTGGAACAAAGACACACACTTACATTGGCAAACCGGTTGTG 487 Query 504 ACCAATGCCACTGTACATGCTGTTGTGGAAAGTCAAGGTTTGAATGATAAAGTGGTAGTC 563 ||||||||||||||||||||||| ||||||| ||| ||| ||||||| |||||||||||| Sbjct 488 ACCAATGCCACTGTACATGCTGTAGTGGAAAATCAGGGTCTGAATGACAAAGTGGTAGTC 547 Query 564 TTCAAGTACAAGCCTAAGAAGAAGTACCGTAGAAATATCGGTCACAGACAGCCGAATACG 623 ||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||| Sbjct 548 TTCAAGTACAAGCCTAAGAAGAAATACCGTAGAAATATTGGTCACAGACAGCCAAATACG 607 Query 624 AGGATTAGGATTACCGGAATCACAGGGTATGAAGAGTATCCAGCCTCGCCCAATGTTGCA 683 |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 608 AGGATTAGGATTACAGGAATCACAGGGTATGAAGAGTATCCAGCGTCGCCCAATGTTGCG 667 Query 684 GTT-----G-G---AGAAGTA-A--ATCTTTGACACAAAATGTTTCTTGAATGTTAAAAT 731 ||| | | ||||||| | ||||||||||||| |||| |||||||||||||| | Sbjct 668 GTTTAAATGTGTTGAGAAGTATAGGATCTTTGACACAATATGTATCTTGAATGTTAAA-T 726 Query 732 TTTTCTGATCTTCTCTATGTAATTTT-GTAAGGACCCTGGTCATTTCATTTCTGCTGAGA 790 |||||||||||||||||||||||||| ||||||||| | ||||||||||||| |||||| Sbjct 727 TTTTCTGATCTTCTCTATGTAATTTTTGTAAGGACCA-GATCATTTCATTTCTTCTGAGA 785 Query 791 TTCCTTTTATTAATATGTACCT--TTT-GCCATTCTTTGATCACAAATTCTAAGTTAGTG 847 | ||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||| Sbjct 786 TCCCTTTTATTAAAATGTACCTGCTTTTGCCATTCTTTGATCACAAATTCTAAGTTAGTG 845 Query 848 TATGAAAACTTCA 860 || |||||||||| Sbjct 846 TAAGAAAACTTCA 858 > Ahg922741 jgi|Araly1|922741|scaffold_104022.1 Length=2389 Score = 243 bits (131), Expect = 2e-63 Identities = 149/158 (94%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 77 TACTTTCTCTGCTCATTGCAATGTCAATTCTCGCCGTTCTAGCACTATCCTCTGTTCTCT 136 |||||||||||||||||||||||||| ||| |||||||| || |||||||| |||||||| Sbjct 1 TACTTTCTCTGCTCATTGCAATGTCACTTCACGCCGTTCGAGTACTATCCTGTGTTCTCT 60 Query 137 CTCTAAACCTTCGCTTAATTTGGCTAAACCTCTGACTGGATTTCTTTCTCCTTCCACTGC 196 |||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 61 CTCTAAACCTTCACTTAATTTGGCTAAACCTGTGTCTGGATTTCTTTCTCCTTCCACTGC 120 Query 197 GTCGACGTCTCGAACCGCATTCACCGTCGCTCCGAAAT 234 ||||||||||||||||||||||||||||||||| |||| Sbjct 121 GTCGACGTCTCGAACCGCATTCACCGTCGCTCCTAAAT 158 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32442602367 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5