BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G35720.1
Length=1317
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473695 jgi|Araly1|473695|fgenesh2_kg.1__3649__AT1G35720.1 2023 0.0
> Ahg473695 jgi|Araly1|473695|fgenesh2_kg.1__3649__AT1G35720.1
Length=1303
Score = 2023 bits (1095), Expect = 0.0
Identities = 1246/1317 (95%), Gaps = 18/1317 (1%)
Strand=Plus/Plus
Query 1 CGGACAGGCCACGTCGTGTCCTAAACCTCTTAGCCTTTCCCTTTATAAGTCAATCTTGTG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CGGACAGGCCACGTCGTGTCCTAAACCTCTTAGCCTTTCCCTTTATAAGTCAATCTTGTG 60
Query 61 TCGGCTTCGACTCCCAACATAC--ACAAAACACTAAAAGTAGAAGAAAAATGGCGACTCT 118
||||||||||||| |||||||| ||| | |||| |||||||||| ||||||| |||||
Sbjct 61 TCGGCTTCGACTCTCAACATACATACACACCACT--AAGTAGAAGAGAAATGGCTACTCT 118
Query 119 TAAGGTTTCTGATTCTGTTCCTGCTCCTTCTGATGATGCTGAGCAATTGAGAACCGCTTT 178
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 119 TAAGGTTTCTGATTCTGTTCCTGCTCCTTCTGAGGATGCTGAGCAACTGAGAACCGCTTT 178
Query 179 TGAAGGATGGGGTACGAACGAGGACTTGATCATATCAATCTTGGCTCACAGAAGTGCTGA 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TGAAGGATGGGGTACGAACGAGGACTTGATCATATCAATCTTGGCTCACAGAAGTGCTGA 238
Query 239 ACAGAGGAAAGTCATCAGGCAAGCATACCACGAAACCTACGGCGAAGACCTTCTCAAGAC 298
||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 239 ACAGAGGAAGGTGATCAGGCAAGCATACCATGAAACCTACGGCGAAGACCTTCTCAAGAC 298
Query 299 TCTTGACAAGGAGCTCTCTAACGATTTCGAGAGAGCTATCTTGTTGTGGACTCTTGAACC 358
|||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 299 TCTTGACAAGGAACTCTCCAACGACTTCGAGAGAGCTATCTTGTTGTGGACTCTTGAACC 358
Query 359 CGGTGAGCGTGATGCTTTATTGGCTAATGAAGCTACAAAAAGATGGACTTCAAGCAACCA 418
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 359 CGGTGAGCGTGATGCTTTATTGGCTAATGAAGCTACCAAAAGATGGACTTCAAGCAACCA 418
Query 419 AGTTCTTATGGAAGTTGCTTGCACAAGGACATCAACGCAGCTGCTTCACGCTAGGCAAGC 478
||| ||||||||||| ||||||||||| || ||||||||||| |||||||||||||||||
Sbjct 419 AGTGCTTATGGAAGTAGCTTGCACAAGAACCTCAACGCAGCTTCTTCACGCTAGGCAAGC 478
Query 479 TTACCATGCTCGCTACAAGAAGTCTCTTGAAGAGGACGTTGCTCACCACACTACCGGTGA 538
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 479 TTACCATGCTCGCTACAAGAAGTCTCTTGAAGAGGATGTCGCTCACCACACTACCGGTGA 538
Query 539 CTTCAGAAAGCTTTTGGTTTCTCTTGTTACCTCATACAGGTACGAAGGAGATGAAGTGAA 598
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 539 CTTCAGAAAGCTTTTGGTTTCTCTTGTTACCTCATACAGGTACGAAGGCGATGAAGTGAA 598
Query 599 CATGACATTGGCTAAGCAAGAAGCTAAGCTGGTCCATGAGAAAATCAAGGACAAGCACTA 658
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 599 CATGACATTGGCTAAGCAAGAGGCTAAGCTGGTCTATGAGAAAATCAAGGACAAGCACTA 658
Query 659 CAATGATGAGGATGTTATTAGAATCTTGTCCACAAGAAGCAAAGCTCAGATCAATGCTAC 718
||| ||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct 659 CAACGATGAGGATGTTATTAGGATCTTGTCCACAAGGAGCAAAGCACAGATCAATGCTAC 718
Query 719 TTTTAACCGTTACCAAGATGATCATGGCGAGGAAATTCTCAAGAGTCTTGAGGAAGGAGA 778
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 719 TTTTAACCGTTACCAAGATGATCATGGCGAGGAAATTCTCAAGAGTCTTGAGAAAGGAGA 778
Query 779 TGATGATGACAAGTTCCTTGCACTTTTGAGGTCAACCATTCAGTGCTTGACAAGACCAGA 838
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 779 TGATGATGACAAGTTCCTTGCACTGTTGAGGTCAACGATTCAGTGCTTGACAAGACCAGA 838
Query 839 GCTTTACTTTGTCGATGTTCTTCGTTCAGCAATCAACAAAACTGGAACTGATGAAGGAGC 898
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 839 GCTTTACTTTGTTGATGTTCTTCGTTCAGCAATCAACAAAACTGGAACCGATGAAGGAGC 898
Query 899 ACTCACTAGAATTGTGACCACAAGAGCTGAGATTGACTTGAAGGTCATTGGAGAGGAGTA 958
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TCTCACTAGAATTGTGACCACAAGAGCTGAGATTGACTTGAAGGTCATTGGAGAGGAGTA 958
Query 959 CCAGCGCAGGAACAGCATTCCTTTGGAGAAAGCTATTACCAAAGACACTCGTGGAGATTA 1018
||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||
Sbjct 959 CCAGCGCAGGAACAGCATTCCTTTGGAGAAAGCCATCACTAAAGACACTCGTGGAGATTA 1018
Query 1019 CGAGAAGATGCTCGTCGCACTTCTCGGTGAAGATGATGCTTAATCAATCAATCCTCCACA 1078
|||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1019 CGAGAAGATGCTTGTCGCACTTCTCGGTGAAGACGATGCTTAATCAATCAATCCTCTACA 1078
Query 1079 GAGAAACATAAGCTGCTCTACAGCTTCTGTTAtctcttatctccctctctctctctTTGA 1138
|||||||||||||| |||| |||||||||| ||||| ||||| |||||| ||||||||
Sbjct 1079 GAGAAACATAAGCT--TCTATAGCTTCTGTTTTCTCTCATCTCTCTCTCTTTCTCTTTGC 1136
Query 1139 TGAGTTTCAAATCGTTTGATTTT-GTTTCTACAAAAACCTTGTTTGTT-TCTGTTGTGTG 1196
||| ||| |||||||||||||| ||| || ||||||||||||||||| | |||||| ||
Sbjct 1137 TGAATTTGTAATCGTTTGATTTTCGTT-CTTCAAAAACCTTGTTTGTTGT-TGTTGTATG 1194
Query 1197 TTTTGAGTTCCTAAATAATGCAAAagagagagacagagagaACCAGTGTGGTCTCTTAAG 1256
||||||||||| ||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1195 TTTTGAGTTCCCAAATAATGCAAAAGAGAGAGA-A-------CCAGTGTGGTCTCTTAAG 1246
Query 1257 TTATATATATATGAAGAGCATTGGCCTAAAACACAGACTAACAAGTAGTTCTGGTTT 1313
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1247 TTATATATATATAAAGAGCATTGGCCTAAAACACAGACTAACAAGTAGTTCTGGTTT 1303
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49254808764
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5