BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G36050.1 Length=1733 Score E Sequences producing significant alignments: (Bits) Value Ahg922760 jgi|Araly1|922760|scaffold_104041.1 1919 0.0 Ahg950830 jgi|Araly1|950830|scaffold_802717.1 224 2e-57 Ahg947532 jgi|Araly1|947532|scaffold_703761.1 224 2e-57 Ahg946896 jgi|Araly1|946896|scaffold_703125.1 224 2e-57 > Ahg922760 jgi|Araly1|922760|scaffold_104041.1 Length=1205 Score = 1919 bits (1039), Expect = 0.0 Identities = 1129/1173 (96%), Gaps = 3/1173 (0%) Strand=Plus/Plus Query 242 TCGTTCCCGGAGGTGTTTAAAAATGGCCGGGATCTTGAATAAATTGCGGAATCTAGATGC 301 |||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||| Sbjct 1 TCGTCCCCGGAGGTGTTT--AAATGGCCGGGATCTTGAATAAACTGCGGAATCTAGATGC 58 Query 302 ATATCCTAAGATCAATGAAGATTTTTACAGCCGTACATTATCCGGCGGAGTTATCACTCT 361 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 59 ATATCCTAAGATCAATGAAGATTTCTACAGCCGTACATTATCCGGCGGAGTTATCACTCT 118 Query 362 CCTCTCCTCCGTTGTTATGTTCCTTCTCTTCTTCTCCGAGCTCCGTCTTTATCTTCATAC 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 119 CCTCTCCTCCGTTGTTATGTTCCTTCTCTTCTTCTCCGAGCTCCGTCTTTATCTTCATAC 178 Query 422 AGTCACCGAGACGAAGCTTATAGTAGATACTTCAAGGGGAGAGACGTTACGCATCAACTT 481 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 179 AGTCACAGAGACGAAGCTTATAGTAGATACTTCAAGGGGAGAGACGTTACGTATCAACTT 238 Query 482 TGATATTACGTTTCCTGCTCTAGCATGTTCGATTCTTAGTGTTGATGCTATGGATATTAG 541 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 239 TGATATTACTTTTCCTGCTCTAGCATGTTCGATTCTTAGTGTTGATGCTATGGATATTAG 298 Query 542 TGGAGAGCTTCATCTTGACGTGAAACATGATATCATAAAGAGAAGATTAGATTCTAATGG 601 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 299 TGGAGAGCTGCATCTTGACGTGAAACATGATATCATAAAGAGAAGATTAGATTCTAATGG 358 Query 602 CAACACTATAGAGGCAAGACAGGACGGAATAGGCGCTACTAAGATTGAAAACCCACTGCA 661 |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 359 CAACACTATAGAAGCAAGACAGGACGGAATAGGCGCTACTAAGATTGAAAAACCACTGCA 418 Query 662 GAAACATGGTGGCAGGCTGGGACATAATGAGACTTACTGTGGTTCTTGCTATGGGGCTGA 721 |||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||| Sbjct 419 GAAACATGGTGGCAGGCTGGAACATAACGAGACTTACTGTGGTTCTTGCTATGGTGCTGA 478 Query 722 AGCGGAAGAGCATGACTGCTGCAATTCGTGTGAGGATGTTCGTGAAGCATATAGAAAGAA 781 ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 479 AGCGGAAGAGCATGACTGCTGCAATTCATGTGAGGATGTTCGTGAAGCTTATAGAAAGAA 538 Query 782 AGGTTGGGGGGTTACTAATCCAGATTTGATTGACCAGTGTAAACGAGAAGGTTTTCTACA 841 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 539 AGGTTGGGGGGTTACAAATCCAGATTTGATTGACCAGTGTAAACGAGAAGGTTTTCTACA 598 Query 842 AAGAGTAAAGGATGAAGAAGGTGAAGGGTGTAATATATATGGGTTCTTGGAGGTCAATAA 901 |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 599 AAGAGTAAAGGATGAAGAAGGTGAAGGGTGTAATATCTACGGGTTCTTGGAGGTCAATAA 658 Query 902 GGTGGCTGGGAACTTCCACTTTGCTCCTGGGAAAAGCTTTCATCAGTCGGGCGTGCATGT 961 ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 659 GGTGGCTGGAAACTTCCACTTTGCTCCTGGGAAAAGCTTTCATCAGTCGGGTGTGCACGT 718 Query 962 TCACGATCTTCTTGCTTTTCAGAAAGACAGTTTTAACATAAGTCACAAGATCAATAGACT 1021 |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 719 TCACGATCTTCTTGCTTTTCAGAAAGACAGTTTTAATATAAGTCATAAGATCAATAGACT 778 Query 1022 TACTTATGGAGACTACTTTCCTGGCGTCGTTAACCCTCTTGACAAAGTCGAGTGGAGTCA 1081 |||||||| |||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 779 GACTTATGGGGACTACTTTCCTGGTGTTGTTAACCCTCTTGACAAAGTCGAGTGGAGTCA 838 Query 1082 AGACACACCTAATGCTATGTACCAATACTTTATCAAGGTTGTACCAACAGTATACACAGA 1141 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 839 AGACACACCTAATGCTATGTACCAATACTTCATCAAGGTTGTACCAACAGTATACACAGA 898 Query 1142 TATCAGAGGACACACAATTCAATCGAATCAGTTCTCAGTGACCGAACATGTAAAGAGCTC 1201 ||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| Sbjct 899 TATCAGAGGACACACAATTCAGTCAAATCAGTTCTCGGTGACCGAACATGTAAAGAGCTC 958 Query 1202 AGAAGCAGGTCAACTGCAATCTTTACCTGGAGTTTTCTTCTTCTATGATCTCTCTCCAAT 1261 |||||| ||||| |||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 959 AGAAGCGGGTCAGCTGCAATCCTTACCAGGAGTTTTCTTCTTCTATGATCTCTCTCCAAT 1018 Query 1262 CAAGGTAACATTTACGGAGGAACACATATCATTCTTGCACTTCTTGACGAATGTTTGCGC 1321 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1019 CAAGGTAACATTTACGGAGGAACACATATCGTTCTTGCACTTCTTGACGAATGTTTGCGC 1078 Query 1322 CATAGTTGGAGGTGTCTTCACAGTGTCCGGGATAATAGACGCGTTTATATACCATGGTCA 1381 ||||| |||||||| || ||||| |||||||||||||| |||||||||||||||||||| Sbjct 1079 TATAGTCGGAGGTGTTTTTACAGTATCCGGGATAATAGATGCGTTTATATACCATGGTCA 1138 Query 1382 AAAAGCTATCAAGAAGAAGATGGAAATTGTGTA 1414 ||||||||||||||||||||||||||||| ||| Sbjct 1139 AAAAGCTATCAAGAAGAAGATGGAAATTG-GTA 1170 > Ahg950830 jgi|Araly1|950830|scaffold_802717.1 Length=203 Score = 224 bits (121), Expect = 2e-57 Identities = 158/175 (90%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 474 ATC-AACTTTGATATTACG-TTTCCTGCTCTAGCATGTTCGATTCTTAGTGTTGATGCTA 531 ||| || || |||| |||| |||||||||||| ||||||||||||||||||||||||||| Sbjct 29 ATCTAAGTTCGATA-TACGTTTTCCTGCTCTACCATGTTCGATTCTTAGTGTTGATGCTA 87 Query 532 TGGATATTAGTGGAGAGCTTCATCT-TGACGTGAAACATGATATCATAAAGAGAAGATTA 590 |||||||||||||||| || | | | |||||||||||||||||| ||||||||||||||| Sbjct 88 TGGATATTAGTGGAGAACTGCTT-TGTGACGTGAAACATGATATTATAAAGAGAAGATTA 146 Query 591 GATTCTAATGGCAACACTATA-GAGGCAAGACAGGACGGAATAGGCGCTACTAAG 644 ||||| |||||||||||| || ||||||||||| |||| |||||||||||||||| Sbjct 147 GATTCAAATGGCAACACTTTAAGAGGCAAGACATGACGTAATAGGCGCTACTAAG 201 > Ahg947532 jgi|Araly1|947532|scaffold_703761.1 Length=203 Score = 224 bits (121), Expect = 2e-57 Identities = 159/176 (90%), Gaps = 8/176 (5%) Strand=Plus/Plus Query 474 ATC-AACTTTGATATTACG-TTTCCTGCTCTAGCATGTTCGATTCTTAGTGTTGATGCTA 531 ||| || || |||| |||| |||||||||||||||||||||||||||||||||||||||| Sbjct 29 ATCTAAGTTCGATA-TACGTTTTCCTGCTCTAGCATGTTCGATTCTTAGTGTTGATGCTA 87 Query 532 TGGATATTAGTGGAGAGCTTCATCTTG--ACGTGAAACATGATATCATAAAGAGAAGATT 589 |||||||||||||||| || | | ||| |||||||||||||||| |||||||||||||| Sbjct 88 TGGATATTAGTGGAGAACTGC-T-TTGCGACGTGAAACATGATATTATAAAGAGAAGATT 145 Query 590 AGATTCTAATGGCAACACTATA-GAGGCAAGACAGGACGGAATAGGCGCTACTAAG 644 |||||| |||||||||||| || ||||||||||| |||| |||||||||||||||| Sbjct 146 AGATTCAAATGGCAACACTTTAAGAGGCAAGACATGACGTAATAGGCGCTACTAAG 201 > Ahg946896 jgi|Araly1|946896|scaffold_703125.1 Length=203 Score = 224 bits (121), Expect = 2e-57 Identities = 158/175 (90%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 474 ATC-AACTTTGATATTACG-TTTCCTGCTCTAGCATGTTCGATTCTTAGTGTTGATGCTA 531 ||| || || |||| |||| |||||||||||| ||||||||||||||||||||||||||| Sbjct 29 ATCTAAGTTCGATA-TACGTTTTCCTGCTCTACCATGTTCGATTCTTAGTGTTGATGCTA 87 Query 532 TGGATATTAGTGGAGAGCTTCATCT-TGACGTGAAACATGATATCATAAAGAGAAGATTA 590 |||||||||||||||| || | | | |||||||||||||||||| ||||||||||||||| Sbjct 88 TGGATATTAGTGGAGAACTGCTT-TGTGACGTGAAACATGATATTATAAAGAGAAGATTA 146 Query 591 GATTCTAATGGCAACACTATA-GAGGCAAGACAGGACGGAATAGGCGCTACTAAG 644 ||||| |||||||||||| || ||||||||||| |||| |||||||||||||||| Sbjct 147 GATTCAAATGGCAACACTTTAAGAGGCAAGACATGACGTAATAGGCGCTACTAAG 201 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65020048215 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5