BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G36990.1
Length=2837
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913497 jgi|Araly1|913497|Al_scaffold_0001_3751 2784 0.0
Ahg489756 jgi|Araly1|489756|fgenesh2_kg.6__2890__AT4G08510.1 662 0.0
> Ahg913497 jgi|Araly1|913497|Al_scaffold_0001_3751
Length=1749
Score = 2784 bits (1507), Expect = 0.0
Identities = 1673/1753 (95%), Gaps = 11/1753 (1%)
Strand=Plus/Plus
Query 790 ATGGACAAAGGTGAACACTCTTTAGCTCCGGAATGGTTGAGAAGTTCAGGGCATGCTTCT 849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGACAAAGGTGAACACTCTTTAGCTCCGGAATGGTTGAGAAGTTCAGGGCATGCTTCT 60
Query 850 GGTGGTGGGAGTTCAAACCACCTCCTTGTATCATCCTCTTCTCATTCAGATTCTGCATCT 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGTGGTGGGAGTTCAAACCACCTCCTTGTATCATCCTCTTCTCATTCAGATTCTGCATCT 120
Query 910 TTACAATATAATAGCAGGAATAGGAACTCTAGGAGCAAAAGTGACGTTGATTCAATTCAT 969
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTACAACATAATAGCAGGAATAGGAACTCTAGGAGCAAAAGTGACGTTGATTCAATTCAT 180
Query 970 TCTCCTTTTCTGGATCGATCTTCTTCTACTAATTCAAGGAGGGGCTCTAGTAATGGTTCT 1029
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 181 TCTCCTTTTCTGGATCGATCTTCTTCTACTAATTCAAGGAGGGGCGCTAGTAATGGTTCT 240
Query 1030 GCAAAACATGCATATAGTAGTTTCAACTTTAATAGGAGTCAAAGGGATAAGGACCGCAGC 1089
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCAAAGCATGCATATAGTAGTTTCAACTTTAATAGGAGTCAAAGGGATAAGGACCGCAGC 300
Query 1090 AGAGACAAGGATAGGGTAAGCTATGTGGATCCATGGGACCTTGACACTTCTATCCCTCTT 1149
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 301 AGGGACAAGGATAGGGTAAGCTATGTGGATCCATGGGACCTTGACACCTCTATCCCTCTT 360
Query 1150 AGAACTATCTTGACTGGTAGGGATCCGGATCCATTGAGACGATCACATTCAATGGTTACA 1209
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 361 AGAACTATCTTGACTGGTAGGGATCCGGATCCATTGAGACGATCACATTCAATGGTAACA 420
Query 1210 AGGAAACAGGGAGAACACCTGTCTCGAGGATTAACAGTGGGCTTGAATAATGGTGGCAGT 1269
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 421 AGGAAACAGGGAGACCACCTGTCTCGAGGATTAACAGTGGGCTTGAAAAATGGTGGCACT 480
Query 1270 AGTAATAGTTACAACGGAAATGGACTACTTTCTGGACCTAGCATTGGGAATAGCTTTCAG 1329
||||||||||||| ||||| ||| |||| ||||||||||||||||||||||||||||||
Sbjct 481 GGTAATAGTTACAATGGAAACGGAGTACTCTCTGGACCTAGCATTGGGAATAGCTTTCAG 540
Query 1330 AGAACTGGGTTTGATAAGGATTTTCCTTCTCTTGGAGCTGAAGAGAAGCAAAATGGGCAA 1389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AGAACTGGGTTTGATAAGGATTTTCCTTCTCTTGGAGCTGAAGAGAAGCAAAATGGGCAA 600
Query 1390 GATGTTGTACGAGTCTCATCTCCTGGTATAAGTTCAGTTGTTCAGAACTTGCCAGTTGGT 1449
||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||
Sbjct 601 GATGTTGTACGAGTCTCATCTCCTGTTATAAGTTCAGCTGTTCAGAACTTACCAGTTGGT 660
Query 1450 AACTCAGCTTTGATTGGTGGGGAAGGTTGGACGTCTGCTCTGGCAGAGGTTCCCAATGTC 1509
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 661 AACTCAGCTTTGATTGGTGGGGAAGGTTGGACATCTGCTCTGGCAGAGGTTCCCAATGTC 720
Query 1510 ATCGAGAAGGCTTGTACTGGGTCATTAACGTCTCCAAAAGCTAATGCTGTTAGCGCGGGA 1569
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||
Sbjct 721 ATCGAGAAGGCTTGTACTGGGTCATTAACGTCCCCAAAGGCTAATGCTGTTAGCACGGGA 780
Query 1570 ACTTTAACTGGCCCAAGTGGTCTTAACATGGCTGAAGCATTGGTGCAGGCTCCAGCAAGA 1629
||||||||||| ||| ||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 781 ACTTTAACTGGAACAACTGGTCTTAACATGGCAGAAGCATTGGTTCAGGCTCCAGCAAGA 840
Query 1630 ACTCACACCCCTCCCCAAGGATCTGTGAAGACACAACGGCTCGAGGATTTGGCAATCAAG 1689
| ||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 841 AGTCACACCCCTCCCCAAGGATCGGTGAAGACACAACGACTCGAGGACTTGGCAATCAAG 900
Query 1690 CAGTCAAGGCAATTGATACCGGTTGTGCCTTCAGCACCAAAGGGCTTGAGTCTGAATTCT 1749
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 901 CAGTCAAGGCAATTGATACCGGTTGTGCCTTCAGCACCAAAGTGCTCGAGTCTGAATTCT 960
Query 1750 TCTGATAAATCCAAGACAAAGCAAGTGGTTCGAACTGGTGAAACTTGCCTTGCTCCCTCA 1809
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 961 TCTGATAAATCCAAGACTAAGCAAGTGGTTCGAACTGGTGAAACTTGTCTTGCTCCCTCA 1020
Query 1810 AGAAATGCCCTACAACAGCCCGCTGTCCTACTTGGGAGTTTCCAGTCTAATCCTAGTGGT 1869
|||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 1021 AGAAATGCCCAACAACAGCCCTCTGTCCTACTTGGGAATTTCCAGTCTAATCCTAGTGGT 1080
Query 1870 CAAATCAAACCTGAGAAGAAGCTGTTGGTTCTCAAACCGGCTAGGGAAAATGGTGTCAGT 1929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 CAAATCAAACCTGAGAAGAAGCTGTTGGTTCTCAAACCGGCTAGGGAAAATGGTGTCAGT 1140
Query 1930 GCTGTTAAAGAATCTGGAAGCCCAAGTGCTAATACAAACACTCGAGCTGCCTCTAGCCAG 1989
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1141 GCTGTTAAAGAATCTGGAAGCCCTAGTGCTAATACAAACACTCGAGCCGCCTCTAGCCAG 1200
Query 1990 CTGATGTCCAATACTCAATCAACCCAATCTGCTCCTGTGAGAAGTACAAACAGCCCAAAG 2049
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1201 CTGATGTCCAATGCTCAATCAACGCAATCTGCTCCTGTGAGAAGTACAAACAGCCCAAAG 1260
Query 2050 GAGCTCAAGGGAGCCAGTGCCTTCTCCATGATATCTGGCCAAACAATCGAAAAGAAACCT 2109
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1261 GAGCTCAAGGGAGCTAGTGCCTTCTCCATGATATCTGGCCAAACTGTCGAAAAGAAATCT 1320
Query 2110 TCCGCTGCTCAAGCTCAGAGCAGGAGTGCATTTTACAGTGCTCTGAAGCAGAAACAAACT 2169
||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1321 TCCACTGCTCAAACTCAGAGCAGGAGTGCATTTTACAGTGCTCTGAAGCAGAAAAAAACT 1380
Query 2170 GCATCAACAAGCATCACCACCGATCCTGTTAGCTCTTCAACCAGTGCCTCTTCTTCTGTT 2229
||||||||||||||| |||||||||| |||| |||||||||||||| |||||||||||||
Sbjct 1381 GCATCAACAAGCATCTCCACCGATCCCGTTAACTCTTCAACCAGTGTCTCTTCTTCTGTT 1440
Query 2230 GAGGTAAAACTCAACAGCTCAAAGGATCTTATAGCTAGTGACCCTTCAAGTTCACAGGCA 2289
|||| |||| |||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 1441 GAGGGAAAAGTCAACAGCTCTAAGGATCTTATAGCTAGTGACCCTTCAAGTCCACAGGCA 1500
Query 2290 ACAAGTGG-CGTCGAAGTGACTGACAGTGTCCAGGTAGCTTCTCATACTAGTGGCTTTGA 2348
|||||||| | || |||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1501 ACAAGTGGGC-TCAAAGTGACTGAAAGGGTCCAGGTAGCTTCTCATACTAGTGGCTTTGA 1559
Query 2349 AGCAACTGACACTCCAGATGAGGAAGAGGCACAGTTCCTTAGATCACTCGGCTGGGTTGA 2408
||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||
Sbjct 1560 AGCAACTGACACTCCAGATGAGGAAGAGGCAGAGTTCCTTAGATCGCTCGGCTGGGATGA 1619
Query 2409 AAACAATGGTGAAGAAT-A---TCTCACAGAGGAGGAGATAGATTCCTTTT-TGGAACAG 2463
||||||||||||||| | | ||||||||||||||||||| | ||||||| || |||||
Sbjct 1620 AAACAATGGTGAAGA-TGAAGCTCTCACAGAGGAGGAGATAAAATCCTTTTATG-AACAG 1677
Query 2464 TACAAGGAGCTGAGGCCGTTATTTCCGGAGAGA-CTATCCATGATACATGAAGCAAGAGA 2522
|||||||||||||||||| ||||||| ||| | || |||||||||||||||||||||||
Sbjct 1678 TACAAGGAGCTGAGGCCGACATTTCCGCAGA-ATCTGTCCATGATACATGAAGCAAGAGA 1736
Query 2523 GGATGTAGCTTAA 2535
|||||||| ||||
Sbjct 1737 GGATGTAGTTTAA 1749
> Ahg489756 jgi|Araly1|489756|fgenesh2_kg.6__2890__AT4G08510.1
Length=2766
Score = 662 bits (358), Expect = 0.0
Identities = 1081/1411 (77%), Gaps = 125/1411 (9%)
Strand=Plus/Plus
Query 918 TAATAGCAGGAATAGGAACTCTAGGAGCAAAAGTGACGTTGATTCAATTCATTCTCCTTT 977
|||||||| ||||||||| |||||||||| |||||| ||||||||| ||| ||||||||
Sbjct 782 TAATAGCAAGAATAGGAATTCTAGGAGCAGAAGTGATGTTGATTCAGTTCGGTCTCCTTT 841
Query 978 TCTGGATCGATCTTCTTCTACTAATTCAAGGAGGGGCTCTAGTAATGGTTCTGCAAAACA 1037
||| ||||| ||||||||||| ||| |||||||||| ||||||||||||||| | |||||
Sbjct 842 TCTCGATCGGTCTTCTTCTACCAATACAAGGAGGGGATCTAGTAATGGTTCTACCAAACA 901
Query 1038 TGCATATAGTAGTTTCAACTTTAATAGGAGTCAA-AGGGATAAGGACCGCAGCAGAGACA 1096
||||||||||||||||||||| |||||||| ||| || ||||| || || ||||| || |
Sbjct 902 TGCATATAGTAGTTTCAACTTCAATAGGAG-CAACAGAGATAAAGATCGGAGCAGGGAGA 960
Query 1097 AGGATAGGGTAAGCTATGTGGATCCATGGGACCTTGACACTTCTATCCCTCTTAGAACTA 1156
| |||||| | ||||| ||||||||||||||| |||||||||| | ||| || |||| |
Sbjct 961 AAGATAGGTTGAGCTACATGGATCCATGGGACCATGACACTTCTCTGCCTTTTGGAACCA 1020
Query 1157 TCTTGACTGGTA-GGGATCCGGATCCATTGAGACGATCACATTCAATGGTTACAAGGAAA 1215
|| ||| ||||| |||| | ||| | | |||||||||||||||| ||| |||||||||
Sbjct 1021 TCGTGATTGGTACGGGA-CAGGAGCAACTGAGACGATCACATTCCATGACAACAAGGAAA 1079
Query 1216 CAGGGAGAA-CACCTGTCTCGAGGATTAACAGTGGGCT-TGAATAATGGTGGCAGTAGTA 1273
||||| || || ||| ||| |||||| ||||| || | | || |||||||| | | ||
Sbjct 1080 CAGGG-CAACCATCTGGCTCAAGGATTTACAGTAGGATAT-AAAAATGGTGGAAACATTA 1137
Query 1274 ATAGTTACAACGGAAATGG-ACTACTTTCTGGACCTAGCATTGGGAATAGCTTTC-AGAG 1331
||| |||||||||| |||| | ||||| ||||| ||||| || || ||| | | | ||
Sbjct 1138 ATACTTACAACGGACATGGTA-TACTTCCTGGAACTAGCCCTGCAAAGAGC-TCCAAAAG 1195
Query 1332 AACTGGGTTT-GATAAGGATTTTCCTTCT-CTTGGAGCTGAAGAGAAGCAAAAT-G-GG- 1386
||| ||||| |||||||||||||||| | ||| ||||||||||| || |||| | ||
Sbjct 1196 AAC-AGGTTTCGATAAGGATTTTCCTT-TGCTTAGAGCTGAAGAG-AG--AAATGGAGGC 1250
Query 1387 CAAGATGTTGTACGAGTCTCATCTCCTGGTATAAGTTCAGTTGTTCAGAACTTGCCAGTT 1446
| ||| || ||| || | ||||||||| | ||||| || || ||||| |||| |||||
Sbjct 1251 CCAGACGTCGTAAGAATAGCATCTCCTGTTCTAAGTCCAACTGCTCAGAGCTTGTCAGTT 1310
Query 1447 GGTAACT-CAGCTTTGATTGGTGGGGAAGGTTGGACGTCTGCTCTGGCAGAGGTTCCCAA 1505
||||| | |||| ||||||| ||||||||||||||| || ||||||||||||||||| ||
Sbjct 1311 GGTAA-TCCAGCCTTGATTGTTGGGGAAGGTTGGACATCGGCTCTGGCAGAGGTTCCAAA 1369
Query 1506 TGTCATCGAGAAG-GCTTGTACTGGGTCATTAACGTCTCCAAAAGCTAATGCTGTTAGCG 1564
||| || |||||| | | ||||| || | || || | |||||| || |||
Sbjct 1370 TGTTATTGAGAAGAG-TGGTACT-GG----T----TC-CC--ATTCTAATGTTGGTAGTT 1416
Query 1565 CGGGAACTTTAACTGG-CCCAAGTGGTCTTAACATGGCTGAAGCATTGGTGCAGGCTCCA 1623
||| || ||||| || |||| | ||| |||||||||||||||||||||||||||||||
Sbjct 1417 CGGCTACCTTAAC-GGTACCAACTTGTCGTAACATGGCTGAAGCATTGGTGCAGGCTCCA 1475
Query 1624 GCAAGAACTCACACCCCTCCCCAAGGATCTGTGAAGACACAACGGCTCGAGGATTTG-GC 1682
| ||||||| || || ||||| || | | || ||| || ||||| | ||
Sbjct 1476 GGAAGAACTGTTACACCACCCCA-GG--C----A---CA-AACA-CTTGAGGACC-GAGC 1522
Query 1683 AATCAAGCAGTCAAGGCAATTGATACCGGTTGTGCCTTCAGCACCAAAGGGCTTGAGT-C 1741
|| | |||||| ||||| |||||||| ||||||||||||||||||||||||| ||| |
Sbjct 1523 TATTAGGCAGTCTAGGCAGTTGATACCTGTTGTGCCTTCAGCACCAAAGGGCTC-AGTTC 1581
Query 1742 -TGAATTCTTCTGATAAATCCAAGAC-AAAGCAAGTGGTTCGAACTGGTGAAACTTGC-C 1798
| || |||||||||||||||||||| ||| ||| || |||||| |||||||| | | |
Sbjct 1582 AT-AACTCTTCTGATAAATCCAAGACCAAACCAA-TGTTTCGAAGTGGTGAAA-TCGGTC 1638
Query 1799 TTGCTCCCTCAAGAAATGCCCTACAACAGCCCGCTGTCCTACTTGGGAGTTTCCAGTCTA 1858
||||| | ||||||||| ||| ||| || || |||| | || || | | | |||||||
Sbjct 1639 TTGCTTCTTCAAGAAATACCCAACAGCATTCCTCTGTGATGCTCGGTAATCTGCAGTCTA 1698
Query 1859 ATCCTAGTGGTCAAATCAAACCTGA---GA--A-GAAGCTGTTGGTTCTCAAACCGGCTA 1912
||||| || |||| ||||| ||||| || | ||||||| || |||||||| | ||||
Sbjct 1699 ATCCTGGTAGTCAGATCAAGCCTGATACGACTAAGAAGCTGGTGATTCTCAAATCTGCTA 1758
Query 1913 GGGAAAATGGTGTCAGT-GCTGTTAAAGAATCTGGAAGCCCAAGTGCTAATACAAACACT 1971
|||||||||| || ||| |||| | | || | |||| | | | | |
Sbjct 1759 GGGAAAATGGGGT-AGTTGCTGG-AG-GT-TCACCA--CCCA-G--C-AG--C---C--- 1800
Query 1972 CGAGCTGCCT-CTAGCCAGCTGATGTCCAATACTCAATCAACCCAAT---CTGCTCCTGT 2027
||||||| | |||||||||||| ||| | ||| ||| || |||| ||||| ||||
Sbjct 1801 -GAGCTGC-TGCTAGCCAGCTGA---CCACTGCTCCATCTACACAATTTACTGCTTCTGT 1855
Query 2028 GAGAAGTACAAACAGCCCAAAGGAGCTCAAGGGAGCCAGTGCCTTCTCCATGATATCTGG 2087
|||||||||||| | |||| ||||| || |||||| || | | |||||| ||||
Sbjct 1856 GAGAAGTACAAATGGTCCAAGGGAGCCCAGGGGAGCTTCTG--TAAAC-ATGATAGCTGG 1912
Query 2088 CCAAACAA-TCGAAAAGAAACCTTCCGCTG-CTCAAGCTCAGAGCAGG-AGTGCATTTTA 2144
|||| | |||||||||| |||| || ||||| ||||||| ||| | ||||||||
Sbjct 1913 AAAAACCGCT-GAAAAGAAACTTTCCT-TGGCTCAAACTCAGAGTAGGCA-TGCATTTTT 1969
Query 2145 CAGTGCTCTGAAGCAGAAACAAACTGCATCAACAAGCATCACCACCGATCCTGTTAGCTC 2204
||||||| ||||||||||| | | | | | | ||| |||| | || ||||| | ||
Sbjct 1970 CAGTGCTTTGAAGCAGAAA-ACA-T-C-T-A-CAAACATCTCAACTGATCC----A--TC 2017
Query 2205 TTCAACCAG-T---GCCTCTT--CTTCTGTTGAGGTAAAACTCAA-CAGCTCAAAGGATC 2257
|||||| | || |||| |||| || |||| |||| ||| ||| || ||||| |
Sbjct 2018 AAAAACCAGCTCTTGCATCTTGTCTTCAGTGGAGG-AAAAGGCAAACAGTTCTAAGGAGC 2076
Query 2258 TTATAGCTAGTGACCCTTCAAGTTCACAGGC 2288
|| |||||||||||||||||||| |||||||
Sbjct 2077 TTGTAGCTAGTGACCCTTCAAGTCCACAGGC 2107
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107071678695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5