BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G37130.1 Length=3130 Score E Sequences producing significant alignments: (Bits) Value Ahg922794 jgi|Araly1|922794|scaffold_104075.1 4449 0.0 > Ahg922794 jgi|Araly1|922794|scaffold_104075.1 Length=2782 Score = 4449 bits (2409), Expect = 0.0 Identities = 2660/2782 (96%), Gaps = 14/2782 (1%) Strand=Plus/Plus Query 82 CTTTCCAACATGGCGGCCTCTGTAGATAATCGCCAATACGCTCGTCTCGAGCCAGGTTTG 141 |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 12 CTTTCCAACATGGCGGCCTCAGTAGATAATCGCCAATACGCTCGGCTCGAGCCAGGTTTG 71 Query 142 AACGGCGTGGTTCGTTCTTACAAACCTCCCGTTCCAGGCCGGTCCGATTCCCCTAAGGCG 201 |||||||||||||||||||||||||||||||| |||||||||||||||||| |||| | Sbjct 72 AACGGCGTGGTTCGTTCTTACAAACCTCCCGTCCCAGGCCGGTCCGATTCCTCTAA---G 128 Query 202 CACCAGAACCAAACCACCAACCAAACCGTGTTCTTGAAACCAGCCAAGGTTCATGACGAT 261 | ||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 129 -----G---CAAACCA-GAACCAAACCGTGTTCTTGAAACCAGCCAAGGTTCATGACGAT 179 Query 262 GACGAAGACGTGTCGAGCGAAGACGAGAACGAGACACACAACAGCAACGCCGTGTACTAC 321 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 GACGAAGACGTGTCGAGCGAAGACGAGAACGAGACACACAACAGCAACGCCGTGTACTAC 239 Query 322 AAGGAGATGATAAGAAAATCCAACGCCGAGCTTGAACCGTCCGTTTTGGACCCGAGGGAC 381 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 240 AAGGAGATGATAAGAAAATCCAACGCCGAGCTTGAACCGTCCGTTTTGGACCCGAGAGAC 299 Query 382 GAATACACGGCTGATAGCTGGATCGAGCGTAACCCTTCCATGGTACGTCTCACAGGGAAA 441 ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 300 GAATACACGGCTGATAGTTGGATCGAGCGTAACCCTTCCATGGTCCGTCTCACAGGGAAA 359 Query 442 CATCCCTTCAACTCCGAGGCGCCTCTTAACCGTTTAATGCACCACGGGTTTATCACCCCT 501 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 CATCCCTTCAACTCCGAGGCGCCTCTTAACCGTTTAATGCACCACGGGTTTATCACCCCT 419 Query 502 GTCCCGTTGCACTACGTTCGTAACCACGGCCACGTCCCTAAAGCCCAATGGGCCGAATGG 561 |||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||| Sbjct 420 GTCCCGTTGCACTACGTTCGTAACCACGGCCATGTCCCTAAGGCCCAATGGGCTGAATGG 479 Query 562 ACGGTCGAGGTGACCGGATTCGTCAAACGGCCCATGAAATTCACCATGGACCAGCTCGTC 621 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 480 ACGGTCGAGGTGACCGGGTTCGTCAAACGGCCCATGAAATTCACCATGGACCAGCTCGTC 539 Query 622 TCCGAGTTTGCTTACCGCGAGTTCGCCGCGACGCTAGTCTGCGCGGGGAACCGCCGTAAG 681 |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 540 TCCGAGTTTGCTTACCGCGAGTTCGCCGCGACACTAGTTTGCGCGGGGAACCGCCGTAAG 599 Query 682 GAACAGAACATGGTGAAGAAGTCAAAGGGATTCAACTGGGGATCCGCCGGAGTTTCCACC 741 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 600 GAACAGAACATGGTGAAGAAGTCAAAGGGATTCAACTGGGGCTCCGCCGGAGTTTCCACC 659 Query 742 TCCGTGTGGCGTGGTGTCCCTCTCTGCGACGTACTGCGTCGCTGCGGGATCTTTAGCCGA 801 |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 660 TCCGTGTGGCGTGGTGTCCCTCTCTGTGACGTTTTGCGTCGCTGCGGGATCTTTAGCCGG 719 Query 802 AAAGGCGGCGCTCTCAACGTCTGCTTCGAAGGGTCGGAGGATCTTCCGGGCGGTGCCGGA 861 |||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 720 AAAGGCGGTGCTCTGAACGTATGCTTCGAAGGGTCGGAGGATCTCCCGGGCGGTGCCGGA 779 Query 862 ACT-GCTGGTTCCAAATACGGAACGAGCATCAAGAAGGAATATGCCATGGATCCATCAAG 920 ||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 780 ACTAG-TGGTTCCAAATACGGAACAAGCATCAAGAAGGAATATGCCATGGATCCATCAAG 838 Query 921 AGACATCATTTTGGCTTATATGCAAAACGGAGAGTATCTAACACCAGACCACGGTTTTCC 980 |||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||| Sbjct 839 AGACATCATTTTGGCTTATATGCAAAACGGAGAGCATCTAACACCAGACCACGGGTATCC 898 Query 981 GGTTCGGATCATCATCCCCGGTTTCATTGGTGGCCGGATGGTTAAATGGTTGAAACGAAT 1040 |||||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||||| Sbjct 899 AGTTCGGATGATCATCCCCGGTTTCATCGGTGGCCGCATGGTTAAATGGTTGAAGCGAAT 958 Query 1041 CATTGTCACAACTAAAGAATCCGACAATTTCTACCATTTCAAGGACAACAGAGTTTTACC 1100 ||| ||||| || |||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 959 CATCGTCACCACGAAAGAATCCGACAATTTCTATCATTTCAAGGATAACAGAGTTTTACC 1018 Query 1101 TTCTTTGGTAGACGCCGAACTCGCCGACGAAGAAGGTTGGTGGTATAAGCCAGAGTACAT 1160 |||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1019 TTCTCTAGTAGACGCCGAACTCGCCGACGAAGAAGGTTGGTGGTATAAGCCGGAGTACAT 1078 Query 1161 AATCAACGAGCTAAACATAAACTCCGTGATTACGACGCCATGTCACGAGGAGATTCTTCC 1220 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1079 AATCAACGAGCTAAACATAAACTCCGTGATTACGACGCCTTGTCACGAGGAGATTCTTCC 1138 Query 1221 CATCAACGCTTTCACAACCCAAAGACCTTATACTTTAAAGGGTTACGCATATTCCGGAGG 1280 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1139 CATCAACGCTTTCACAACCCAAAGACCTTACACTTTAAAGGGTTACGCATATTCCGGAGG 1198 Query 1281 TGGaaaaaaaGTGACCCGTGTGGAGGTCACGGTAGATGGTGGAGAGACATGGAACGTATG 1340 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 1199 TGGAAAAAAAGTGACCCGTGTGGAGGTCACGGTGGATGGTGGAGAGACATGGAACGTTTG 1258 Query 1341 TGCACTTGACCATCAAGAGAAGCCAAACAAGTATGGGAAGTTCTGGTGTTGGTGTTTTTG 1400 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1259 CGAACTTGACCATCAAGAGAAGCCAAACAAGTATGGGAAGTTCTGGTGTTGGTGTTTTTG 1318 Query 1401 GTCACTTGAGGTTGAGGTTTTGGACTTGCTTAGTGCCAAAGAGATTGCTGTTCGTGCATG 1460 ||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||| Sbjct 1319 GTCACTTGAGGTTGAGGTTTTGGACCTGCTTAGTGCCAAGGAGATTGCTGTCCGTGCATG 1378 Query 1461 GGACGAGACTCTCAACACGCAGCCCGAGAAAATGATATGGAATCTCATGGGGATGATGAA 1520 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1379 GGACGAGACTCTTAACACGCAGCCCGAGAAAATGATATGGAATCTCATGGGGATGATGAA 1438 Query 1521 TAACTGCTGGTTTAGAGTGAAGACTAACGTGTGCAAGCCACACAAGGGAGAGATTGGGAT 1580 |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct 1439 TAACTGCTGGTTTAGAGTTAAGACTAACGTGTGCAAGCCACACAAGGGTGAGATTGGGAT 1498 Query 1581 TGTGTTCGAGCATCCAACGCTTCCTGGTAATGAATCTGGTGGATGGATGGCGAAGGAACG 1640 ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 1499 CGTGTTTGAGCATCCAACGCTTCCGGGTAATGAATCTGGTGGATGGATGGCGAAAGAACG 1558 Query 1641 TCACCTCGAAAAATCGGCTGACGCGCCTCCTAGTCTAAAGAAGTCTGTCTCGACGCCGTT 1700 |||||| |||||||| |||||||||||||||| || ||||| ||||||||||| ||||| Sbjct 1559 TCACCTTGAAAAATCCGCTGACGCGCCTCCTACACTCAAGAAATCTGTCTCGACACCGTT 1618 Query 1701 TATGAACACAACTGCGAAGATGTACTCGATGTCCGAGGTCAAGAAGCATAATTCGGCTGA 1760 |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 1619 TATGAACACAACTGCGAAGATGTATTCGATGTCCGAGGTCAAGAAGCATAATTCTGCTGA 1678 Query 1761 CTCTTGCTGGATCATTGTCCATGGACATATCTATGATTGTACACGATTCCTTATGGATCA 1820 ||||||||||||||||||||||||||||||||||||||||| || ||||||||||| || Sbjct 1679 TTCTTGCTGGATCATTGTCCATGGACATATCTATGATTGTACCCGCTTCCTTATGGACCA 1738 Query 1821 CCCGGGTGGTTCGGATTCAATCTTGATCAATGCTGGTACGGATTGTACGGAGGAGTTTGA 1880 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1739 CCCGGGTGGTTCGGATTCGATCTTGATCAATGCTGGTACGGATTGTACGGAGGAGTTTGA 1798 Query 1881 AGCCATTCACTCGGATAAAGCCAAGAAGATGCTTGAGGATTACCGTATCGGTGAGCTCAT 1940 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1799 AGCCATTCACTCTGATAAAGCCAAGAAGATGCTTGAGGATTACCGTATCGGTGAGCTCAT 1858 Query 1941 CACCACTGGTTATTCCTCTGACTCTTCCTCGCCTAACAACTCGGTTCACGGTTCATCCGC 2000 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1859 CACCACTGGTTATTCCTCTGACTCTTCCTCGCCTAACAACTCAGTTCACGGTTCATCCGC 1918 Query 2001 CGTGTTCTCGCTGTTGGCTCCCATTGGAGAGGCGACTCCGGTTAGGAACCTCGCTTTGGT 2060 |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1919 CGTGTTCTCGTTGTTAGCTCCCATTGGAGAGGCGACTCCGGTTAGGAACCTCGCTTTGGT 1978 Query 2061 TAATCCCCGGGCTAAAGTCCCGGTTCAACTCGTCGAAAAGACTTCCATTTCTCATGATGT 2120 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1979 TAATCCCCGGGCTAAAGTCCCGGTTCAACTTGTCGAAAAGACTTCCATTTCTCATGATGT 2038 Query 2121 TCGTAAATTCCGGTTTGCTTTACCGGTTGAGGATATGGTTCTAGGCTTACCGGTTGGTAA 2180 |||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| Sbjct 2039 TCGTAAATTCCGGTTTGCTTTACCAGTTGAGGACATGGTCCTAGGCTTACCGGTTGGTAA 2098 Query 2181 GCACATTTTCCTTTGCGCCACCATCAATGACAAGCTCTGCCTCAGAGCTTACACACCAAG 2240 |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 2099 GCACATTTTCCTCTGCGCCACCATCAATGACAAGCTCTGCCTCAGGGCTTACACACCAAG 2158 Query 2241 CAGCACCGTTGATGTGGTTGGCTACTTCGAGCTCGTGGTCAAGATTTACTTTGGCGGTGT 2300 |||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||| Sbjct 2159 CAGCACCGTTGATGTGGTTGGCTACTTCGAACTTGTGGTCAAGATTTACTTTGGTGGTGT 2218 Query 2301 CCACCCAAGATTCCCTAACGGCGGGCTCATGTCTCAGTACCTAGACTCTTTGCCTATAGG 2360 |||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 2219 CCACCCGAGATTCCCCAATGGCGGGCTCATGTCTCAGTACCTAGACTCTTTGCCTATAGG 2278 Query 2361 GTCAACTTTGGAGATTAAAGGACCATTGGGTCACGTTGAGTATCTCGGCAAGGGTAGTTT 2420 |||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||| Sbjct 2279 GTCAACTTTGGAGATTAAAGGACCGTTGGGTCATGTTGAGTATCTCGGCAAGGGTAATTT 2338 Query 2421 CACGGTTCACGGTAAACCAAAGTTTGCTGATAAATTGGCAATGTTGGCAGGTGGAACCGG 2480 |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 2339 CACGGTTCACGGTAAACCGAAGTTTGCTGATAAGTTGGCAATGTTGGCAGGTGGAACCGG 2398 Query 2481 AATAACTCCGGTTTACCAAATTATCCAAGCCATTCTCAAGGATCCAGAGGATGAGACTGA 2540 |||||||||||||||||||| || || |||||||| ||||||||||||||||||||||| Sbjct 2399 TATAACTCCGGTTTACCAAATCATTCAGGCCATTCTGAAGGATCCAGAGGATGAGACTGA 2458 Query 2541 AATGTACGTCATTTATGCTAACCGGACCGAGGAAGATATTCTCCTAAGGGAGGAACTGGA 2600 ||||| || |||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 2459 GATGTATGTGATTTATGCTAACCGGACCGAGGAAGATATTCTGCTAAGGGAGGAATTGGA 2518 Query 2601 TGGTTGGGCAGAGCAATACCCGGACCGGTTAAAGGTTTGGTACGTAGTGGAATCAGCTAA 2660 ||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 2519 TGGTTGGGCAGTGCAGTACCCGGACCGGTTAAAGGTTTGGTACGTAGTGGAATCGGCTAA 2578 Query 2661 GGAAGGTTGGGCATACAGTACCGGGTTTATTTCCGAGGCGATTATGCGAGAACATATCCC 2720 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2579 AGAAGGTTGGGCATACAGTACCGGGTTTATTTCCGAGGCGATTATGCGAGAACATATCCC 2638 Query 2721 TGATGGATTAGATGGCTCAGCCCTTGCCATGGCTTGCGGACCACCACCGATGATTCAGTT 2780 ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| Sbjct 2639 TGATGGATTAGATGGCTCATCCCTTGCCATGGCTTGTGGACCACCACCGATGATTCAGTT 2698 Query 2781 TGCGGTTCAGCCGAATTTGGAGAAGATGCAATATAACATCAAGGAGGATTTCTTGATATT 2840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2699 TGCGGTTCAGCCGAATTTGGAGAAGATGCAATATAACATCAAGGAGGATTTCTTGATATT 2758 Query 2841 CTAGTCTAAAGCCAAGATATTT 2862 ||||||||||||||||| |||| Sbjct 2759 CTAGTCTAAAGCCAAGAGATTT 2780 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 118232120480 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5