BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G41830.1
Length=2068
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475543 jgi|Araly1|475543|fgenesh2_kg.2__673__AT1G41830.1 3013 0.0
> Ahg475543 jgi|Araly1|475543|fgenesh2_kg.2__673__AT1G41830.1
Length=1853
Score = 3013 bits (1631), Expect = 0.0
Identities = 1783/1856 (96%), Gaps = 11/1856 (1%)
Strand=Plus/Plus
Query 26 TCTCTCCCTCGACGCACTTAAATTTACATAACTAAGTGTGTGTCTATTCATATCACTCA- 84
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTCTCCCTCAACGCACTTAAATTTACATAACTAAGTGTGTGTCTATTCATATCACTCAC 60
Query 85 -CTCTCTCTCTTCCTCACACTTACATTCTCCCTCTAttt-ttttttCTCTCTCTCCACAA 142
||||||||||||||||| || ||||||||||||| ||| ||||||||||||| ||||||
Sbjct 61 TCTCTCTCTCTTCCTCACTCTCACATTCTCCCTCTCTTTATTTTTTCTCTCTCACCACAA 120
Query 143 GAAACGCCGTCGTTCATTAAAAATGATGGCGGTGGGCAGATCCGGAGGCA-C--CATCCT 199
|||||||||| ||||||||||||||||| ||||||||||||||||||||| | | ||||
Sbjct 121 GAAACGCCGTAGTTCATTAAAAATGATGACGGTGGGCAGATCCGGAGGCACCGTCGTCCT 180
Query 200 ATTGTTCTGCCTATCATTCTTCGCCGCGGTAACCGCGGAGAGTCCATACCGATTCTTTGA 259
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 181 ATTGTTCTGCCTATCATTCTTCGCGGCGGTAACCGCCGAGAGTCCATACCGATTCTTTGA 240
Query 260 CTGGAATGTAACATACGGCGACATTTACCCACTCGGTGTTCGTCAGCAGGGAATATTGAT 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTGGAATGTAACATACGGCGACATTTACCCACTCGGTGTTCGTCAGCAGGGAATATTGAT 300
Query 320 TAATGGGCAATTTCCGGGACCAGACATTCACAGTGTGACAAACGACAATCTCATCATTAA 379
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 301 TAATGGGAAATTTCCGGGACCGGACATTCACAGTGTGACAAACGACAATCTCATCATTAA 360
Query 380 CGTACACAACAGCTTAGACGAGCCTTTCTTAATCTCATGGAACGGAGTACAAAACAGAAG 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CGTACACAACAGCTTAGACGAGCCTTTCTTAATCTCATGGAACGGAGTACAAAACAGAAG 420
Query 440 AAATTCTTATGTTGATGGAATGTACGGAACCACGTGTCCAATTCCACCGAGAAGCAACTA 499
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAATTCTTATGTCGATGGAATGTACGGAACCACGTGTCCAATTCCACCGAGAAGCAACTA 480
Query 500 CACATACATTTTGCAAGTGAAAGACCAAATTGGAAGTTTCTATTACTTCCCATCTCTTGC 559
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 481 CACATACATTTTGCAAGTGAAAGATCAAATTGGAAGTTTCTATTACTTCCCATCTCTTGC 540
Query 560 CTTTCACAAGGCAGCTGGTGGATTCGGAGGTATCAGAATCCTTAGCCGTCCTGGAATTCC 619
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 541 TTTTCACAAGGCAGCTGGTGGATTCGGAGGTATCAGAATCCTTAGTCGTCCTGGAATTCC 600
Query 620 AGTTCCATTTGCTGACCCTGCAGGAGATTACACTGTCCTCATTGGAGATTGGTACAAATT 679
||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 601 AGTTCCATTCGCTGACCCTGCAGGAGATTATACTGTCCTCATTGGAAATTGGTACAAATC 660
Query 680 TAATCACACGGATTTGAAGTCTCGTCTTGATAGAGGAAGGAAGTTACCTTCGCCTGATGG 739
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 661 TAATCACACGGATTTGAAGTCTCGTCTTGACAGAGGAAGGAAGTTACCTTTGCCTGATGG 720
Query 740 TATTCTTATCAATGGCCGAAGTAACGGTGCTACCTTAAACGTTGAACAAGGAAAAACATA 799
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 721 TATTCTTATCAATGGCCGAAGCAACGGTGCTACCTTAAACGTTGAACAAGGAAAAACATA 780
Query 800 CCGATTGAGGATATCAAACGTTGGATTACAAGATTCTCTGAACTTCCGAATCCAAAACCA 859
||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||
Sbjct 781 CCGATTGAGGATATCAAACGTTGGATTACAAGATTCTCTAAATTTCAGAATCCAAAACCA 840
Query 860 CAGAATGAAGCTTGTGGAAGTCGAAGGGACGCACACACTTCAAACCATGTTTTCCTCTCT 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 841 CAGAATGAAGCTTGTGGAAGTCGAAGGGACGCACACACTTCAAACCATGTTTTCCTCACT 900
Query 920 TGACGTTCACGTTGGCCAGTCTTACTCCGTTCTAATTACTGCTGACCAATCTCCTCGTGA 979
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 901 GGACGTTCACGTTGGCCAGTCTTACTCCGTTCTGATTACTGCTGACCAATATCCTCGTGA 960
Query 980 CTACTACGTGGTTGTTTCGTCTCGATTCACGGATAAAATCATAACCA-CCACCGGGGTTC 1038
||||||||||||||| |||||||| ||||| ||||||||||||| | |||| || ||||
Sbjct 961 CTACTACGTGGTTGTCTCGTCTCGGTTCACTAATAAAATCATAAC-AGCCACTGGCGTTC 1019
Query 1039 TTCGCTACAGTGGCTCGTCTACCCCTGCTTCTGGTCCTATTCCTGGCGGTCCCACTATTC 1098
||||||||||||||||||| ||||| |||||||||||||||||||| |||||||| ||||
Sbjct 1020 TTCGCTACAGTGGCTCGTCCACCCCAGCTTCTGGTCCTATTCCTGGTGGTCCCACAATTC 1079
Query 1099 AGGTTGATTGGTCCTTGAACCAAGCACGTGCCATCAGAACCAATTTGACAGCTAGTGGAC 1158
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1080 AGGTTGATTGGTCCTTGAACCAAGCACGTGCCATCAGAACCAATTTGACGGCTAGTGGAC 1139
Query 1159 CAAGACCAAACCCGCAAGGCTCATACCATTATGGTCTTATACCGCTCATTAGGACAATTG 1218
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1140 CAAGACCTAACCCGCAAGGCTCATACCATTATGGTCTTATACCGCTCATTAGGACTATTG 1199
Query 1219 TGTTCGGTAGTTCAGCCGGACAGATAAACGGGAAACAAAGATATGGTGTCAATAGTGTGT 1278
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1200 TTTTCGGTAGTTCAGCCGGACAGATAAATGGGAAACAAAGATATGGTGTCAATAGTGTGT 1259
Query 1279 CATTTGTGCCAGCTGATACCCCTCTAAAACTGGCTGACTTCTTCAAGATTAGCGGTGTCT 1338
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1260 CATTTGTGCCAGCTGATACCCCTCTAAAACTGGCTGACTTCTTCAAGATTAGTGGTGTCT 1319
Query 1339 ATAAGATCAACAGCATCTCAGACAAACCCACATATGGAGGTTTATACCTTGACACCTCAG 1398
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
Sbjct 1320 ATAAGATCAACAGCATCTCGGACAAACCCACATATGGAGGTTTATACCTTGACACATCCG 1379
Query 1399 TTTTGCAAGTCGACTATCGAACCTTTATCGAGATTGTATTCGAGAACCAAGAAGATATCG 1458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 TTTTGCAAGTCGACTATCGAACCTTTATCGAGATTGTATTCGAGAACCAAGAAGATATCG 1439
Query 1459 TCCAAAGTTATCATCTCAATGGTTACTCCTTTTGGGTGGTCGGGATGGATGGTGGACAGT 1518
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1440 TCCAAAGTTATCATCTCAATGGTTACTCCTTTTGGGTTGTCGGGATGGATGGTGGACAGT 1499
Query 1519 GGAAGACAGGAAGCAGAAATGGTTATAATTTACGCGATGCAGTTTCACGTTCCACAGTCC 1578
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1500 GGAAGACAGGAAGCAGAAATGGTTATAATTTACGCGATGCAGTTTCACGTTCCACCGTCC 1559
Query 1579 AAGTGTACCCAAAATCATGGACAGCCATATACATTGCATTAGACAACGTTGGAATGTGGA 1638
|||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1560 AAGTGTACCCAAAATCCTGGACAGCCATTTACATTGCATTAGACAACGTAGGAATGTGGA 1619
Query 1639 ACTTAAGATCAGAATTTTGGGCAAGACAGTACTTGGGACAACAACTTTACTTACGTGTCT 1698
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1620 ACTTAAGATCAGAGTTTTGGGCAAGACAGTACTTGGGACAACAACTTTATTTACGTGTCT 1679
Query 1699 TCACGTCATCTACGTCTTTGAGAGATGAGTACCCTATCCCGAAGAATTCGCGTTTGTGCG 1758
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 TCACGTCATCAACGTCTTTGAGAGATGAGTACCCTATCCCGAAGAATTCGCGTTTGTGCG 1739
Query 1759 GCCGGGCAAGAGGACGACATACTAGGCCTTTGTAAGGAAGATATACGAGCTTACGTGAAA 1818
||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1740 GCCGGGCAAAAGGACGACATACTAGGCCTTTGTAAGGAAGATATACGA--TTACGTGAAA 1797
Query 1819 TTCGTCATATCCATACACGTTTAAGT-ATTTCTTGGGAAGACTTGCAAGGTTACAA 1873
|| ||||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 1798 GTCATCATATCCATACACGTTTATGTTATTTCTTGCGAAGACTTGCAAGGTTACAA 1853
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77780280290
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5