BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G41880.1 Length=729 Score E Sequences producing significant alignments: (Bits) Value Ahg486011 jgi|Araly1|486011|fgenesh2_kg.5__2003__AT3G55750.1 833 0.0 Ahg470729 jgi|Araly1|470729|fgenesh2_kg.1__683__AT1G07070.1 230 1e-59 Ahg338031 jgi|Araly1|338031|fgenesh1_pg.C_scaffold_2000130 137 9e-32 > Ahg486011 jgi|Araly1|486011|fgenesh2_kg.5__2003__AT3G55750.1 Length=541 Score = 833 bits (451), Expect = 0.0 Identities = 515/545 (94%), Gaps = 8/545 (1%) Strand=Plus/Plus Query 43 TTTTTCTCTGTGAATTCGCTCGGCGGCATAAAAGAGAGTAAGAAGAGGAAGACGAGAG-T 101 ||||||| |||| ||||||||| ||||||||||||| | ||||||||||| || || | Sbjct 1 TTTTTCTGTGTGGATTCGCTCGCCGGCATAAAAGAG-G--GGAAGAGGAAGAAGACAGTT 57 Query 102 TACAAGGATTGAAAATGAAGGGACGTCAAGGAGAGAGAGTTAGATTGTATGTTCGTGGAA 161 | |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 58 TGCAAGGATTGAAAATGAAGGGTCGTCAAGGAGAGAGAGTTAGATTGTATGTTCGAGGAA 117 Query 162 CAGTCCTCGGCTACAAGAGGTCCAAGTCGAACCAATATCCCAACACTTCTCTCATCCAGA 221 |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 118 CAGTCCTCGGTTACAAGAGGTCCAAGTCCAACCAATATCCCAACACTTCTCTCATCCAGA 177 Query 222 TTGAAGGTGTGAACACTCAAGAGGAGGTCAATTGGTACAAGGGTAAGCGTTTGGCTTACA 281 |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 178 TTGAAGGTGTGAACACTCAAGAGGAGGTTAACTGGTACAAGGGTAAGCGTTTGGCTTACA 237 Query 282 TCTACAAGGCAAAGACAAAGAAGAACGGTTCTCACTACCGTTGCATTTGGGGCAAAGTCA 341 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 238 TCTACAAAGCAAAGACAAAGAAGAACGGTTCTCACTACCGTTGCATTTGGGGCAAAGTCA 297 Query 342 CTAGGCCTCATGGTAACAGCGGTGTTGTCCGTTCTAAGTTCACTTCAAACCTACCACCCA 401 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 298 CTAGGCCTCATGGTAACAGCGGAGTTGTCCGTTCTAAGTTCACTTCAAACCTACCACCTA 357 Query 402 AGTCAATGGGAGCTAGAGTCAGAGTCTTCATGTACCCTAGCAACATATGAGGAGGA-TAG 460 ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||| Sbjct 358 AGTCAATGGGAGCTAGAGTCAGAGTCTTCATGTACCCAAGCAACATATGAG-AGGGCTAG 416 Query 461 ATTTCAAGAAGTATCGGAAGGAATCGCCATTATCATTTCTCAGGAGCTGTAGTTTATCTA 520 ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 417 -TTTCAAGAACTATCGGAAGGAATCACCATTATCATTTCTCAGGAGCTGTAGTTTATCTA 475 Query 521 TTCACTTTTGTTCTAAACTCTCTGTTGGTTTTGATTTTATCTTTAGACGAAGTAAAACA- 579 ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 476 TTCACTTTTGTTCTAGACTCTCTGTTGGTTTTGATTTTATCTTTAGACCAAGTAAAACAA 535 Query 580 TTTTT 584 ||||| Sbjct 536 TTTTT 540 > Ahg470729 jgi|Araly1|470729|fgenesh2_kg.1__683__AT1G07070.1 Length=481 Score = 230 bits (124), Expect = 1e-59 Identities = 271/340 (80%), Gaps = 18/340 (5%) Strand=Plus/Plus Query 117 TGAAGGGACGTCAAGGAGAGA-GAGTTAGATTGTATGTTC-GTGGAA-CAGTCCTCGGCT 173 |||| ||||| |||||||| | | || ||| | |||| || | |||| || | || |||| Sbjct 94 TGAAAGGACGCCAAGGAGA-ACGTGTCAGACTCTATG-TCAGGGGAACCA-TACTTGGCT 150 Query 174 ACAAGAGGTCCAAGTCGAACCAATATCCCAACACTTCTCTCA-TCC-AGATTGAAGGTGT 231 |||| ||||| ||||| ||||| ||||| || || || || | ||| || | ||||| || Sbjct 151 ACAAAAGGTCGAAGTCAAACCAGTATCCGAATACGTCCCT-AGTCCAAG-TCGAAGGAGT 208 Query 232 GAACACTCA-AGAGG-AG-GTCAATTGGTACAAGGGTAAGCGTTTGGCTTACATCTACAA 288 ||||| || |||| || ||| | |||||||| ||||| || |||||||||||||||| Sbjct 209 TAACAC-CACTGAGGAAGTGTC-A-TGGTACAAAGGTAAACGAATGGCTTACATCTACAA 265 Query 289 GGCAAAGACAAAGAAGAACGGTTCTCACTACCGTTGCATTTGGGGCAAAGTCACTAGGCC 348 || ||||| |||||||||||| ||||||||| |||||||||||||||||||||||||| Sbjct 266 AGCCAAGACCAAGAAGAACGGTAGTCACTACCGATGCATTTGGGGCAAAGTCACTAGGCC 325 Query 349 TCATGGTAACAGCGGTGTTGTCCGTTCTAAGTTCACTTCAAACCTACCACCCAAGTCAAT 408 ||| |||||||| || ||||| || | || ||||| |||||| | || || || ||||| Sbjct 326 TCACGGTAACAGTGGCGTTGTTCGAGCCAAATTCACATCAAACTTGCCTCCTAAATCAAT 385 Query 409 GGGAGCTAGAGT-CAGAGTCTTCATGTACCCTAGCAACAT 447 |||| || |||| | |||| |||||||| || || ||||| Sbjct 386 GGGATCTCGAGTTC-GAGTGTTCATGTATCCGAGTAACAT 424 > Ahg338031 jgi|Araly1|338031|fgenesh1_pg.C_scaffold_2000130 Length=450 Score = 137 bits (74), Expect = 9e-32 Identities = 80/83 (96%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 647 TTGGGTGGATAGGCATTTGGAGTTGCAAGTAGCTTCTCACTTATTTTTTCCACTTTGATA 706 ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 425 TTGGGTGGATATGCATTTGGAGTTGCAATTAGCTTCTCACTTATTTTTTCCACTTTGATA 366 Query 707 GATTCGTGCTCCTTTTGTTTCTC 729 ||||| ||||||||||||||||| Sbjct 365 GATTCTTGCTCCTTTTGTTTCTC 343 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26838533568 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5