BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G42430.1 Length=1540 Score E Sequences producing significant alignments: (Bits) Value Ahg473738 jgi|Araly1|473738|fgenesh2_kg.1__3692__AT1G42430.1 2176 0.0 > Ahg473738 jgi|Araly1|473738|fgenesh2_kg.1__3692__AT1G42430.1 Length=1530 Score = 2176 bits (1178), Expect = 0.0 Identities = 1428/1544 (92%), Gaps = 36/1544 (2%) Strand=Plus/Plus Query 7 ACTGAAACTGAAACTGAAACTGAAACAC-T-tc--tctctctctctct-T-T---CTCGC 57 ||||||||||||||| |||||||||||| | || ||||||||||||| | | ||||| Sbjct 3 ACTGAAACTGAAACTAAAACTGAAACACTTCTCTTTCTCTCTCTCTCTCTCTAAGCTCGC 62 Query 58 TTCCACGAATCGAGAGTTCTACAAATTCGCTTCCTAGGGTTTCTCAATTCTTCTAATTTC 117 |||||||||||||||||| |||||||||||||| |||||||||||| ||| || || | Sbjct 63 TTCCACGAATCGAGAGTTGTACAAATTCGCTTCTTAGGGTTTCTCATTTC-TCGAA--T- 118 Query 118 TTCATTTCTATGGCGAGTCAATGAGCGAAATGGCGGCTAGCTCCGCAATCTCTCTTCTCG 177 |||| ||| ||||||| || ||||||||||||||||||||||||||| |||||||||||| Sbjct 119 TTCACTTCCATGGCGAATCTATGAGCGAAATGGCGGCTAGCTCCGCAGTCTCTCTTCTCG 178 Query 178 ATATCAAACTCCGACGATTCGGCGTTGGCGCAAGTAACCATGAATTGCGCCTAACTAAGT 237 ||||||| |||||||||||||||||| || | ||||||||||||||||| |||| Sbjct 179 ATATCAAGCTCCGACGATTCGGCGTT-----AA-T---CATGAATTGCGCCTAACGAAGT 229 Query 238 GGTTCAAAGGTGA-T-C-AAGC--C---GGAGCTCCGACGAGAAGATTCACCTGCTTCGC 289 || ||||| | | | || | || | || ||||||||||| | ||||| || Sbjct 230 GG--AAAAGGAAACTCCTTTGCTTCGATGGTGATCAAACGAGAAGATTTAGGTGCTTTGC 287 Query 290 AGATATGTTGGCACCGATTCGCCGCTCTGAGAAGTCAGAGGAACGGCGTTTTGATCAGAA 349 |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 288 AGATATGTTGGCACCGATTCGCCGCTCTGAGAAGTCGGAGGAACGGCGTTTCGATCAGAA 347 Query 350 GATGAGTGCTCACGGTGCCGGAATCAAAACTTCTTCCTCTGCAGTGCCATTTGCTTCTCC 409 || |||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 348 GACGAGTGCCCACGGTGCCGGAATCAAAACTTCATCTTCTGCAGTGCCATTTGCTTCTCC 407 Query 410 TAAATCTCGATTTTTGTCTAAGCAAGAAAAGTTCTATCCTCGTTGTACTCCAAGGCTTAC 469 |||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 408 AAAATCTCGATTTGTGTCCAAGCAAGAAAAGTTCTACCCTCGTTGTACTCCAAGGCTTAC 467 Query 470 TGGTCCTCAGTCTCGTGATACTCCTCCTAAAAGAGACACTGGGATAGCTAATGAAAAGGA 529 ||| |||||||| ||||||||||| |||||| ||||||| ||||| |||||||||||||| Sbjct 468 TGGCCCTCAGTCCCGTGATACTCCGCCTAAACGAGACACCGGGATTGCTAATGAAAAGGA 527 Query 530 TTGGGGGATTGATTTGTTGAATGAGAATGTGAATGAAG-CTGGCACTAATGAAGATGGTA 588 |||||| |||||||||||||||||||||||||||| || ||||||||||||||||||| | Sbjct 528 TTGGGGCATTGATTTGTTGAATGAGAATGTGAATG-AGTCTGGCACTAATGAAGATGGCA 586 Query 589 GTAGTTGGTTTAGAGAAAGTGGACATGATTTGGGAGATAATGGTTACAGATGTAGGTGGT 648 |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| Sbjct 587 GTAGTTGGTTTAGAGAGAGTGGACATGATCTGGGAGATAATGGTTACAGATGTAGGTGGA 646 Query 649 CAAGGATGGGTGGTCGATCTCATGATGGTTCTTCTGAATGGACTGAAACGTGGTGGGAGA 708 |||||||||||||||| ||||| || || |||||||| |||||||||||||||||||||| Sbjct 647 CAAGGATGGGTGGTCGGTCTCACGACGGCTCTTCTGAGTGGACTGAAACGTGGTGGGAGA 706 Query 709 AAAGTGACTGGACTGGATACAAAGAGTTAGGTGTGGAGAAATCTGGTAAAAATTCTGAGG 768 ||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||| Sbjct 707 AAAGTGACTGGACTGGATACAAAGAATTAGGTGTGGAGAAATCTGGTAAAAATGCCGAGG 766 Query 769 GTGACTCTTGGTGGGAAACTTGGCAAGAAGTCCTTCATCAAGATGAGTGGAGTAATCTAG 828 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 767 GTGACACTTGGTGGGAAACTTGGCAAGAAGTCCTTCATCAAGATGAGTGGAGTAATCTAG 826 Query 829 CAAGGATTGAAAGGAGTGCACAAAAGCAAGCAAAATCAGGAACTGAAAATGCTGGTTGGT 888 | ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 827 CGAGGATAGAAAGGAGTGCACAAAAGCAAGCAAAATCAGGAACCGAAAATGCTGGTTGGT 886 Query 889 ACGAGAAATGGTGGGAGAAGTACGATGCTAAAGGGTGGACAGAGAAAGGAGCACATAAGT 948 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 887 ACGAGAAATGGTGGGAGAAGTATGATGCTAAAGGGTGGACAGAGAAAGGAGCACATAAGT 946 Query 949 ATGGTAGACTTAATGAGCAGTCATGGTGGGAGAAGTGGGGGGAGCATTATGATGGAAGAG 1008 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 947 ATGGTAGACTAAATGAGCAGTCATGGTGGGAGAAGTGGGGGGAGCATTATGATGGAAGAG 1006 Query 1009 GATCTGTTCTCAAATGGACAGACAAGTGGGCTGAGACAGAGTTGGGGACCAAATGGGGAG 1068 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1007 GATCTGTTCTCAAATGGACAGACAAGTGGGCTGAGACAGAGTTGGGGACCAAATGGGGAG 1066 Query 1069 ACAAGTGGGAAGAGAAATTTTTCAGTGGGATTGGTTCACGTCAGGGGGAGACATGGCATG 1128 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1067 ACAAGTGGGAAGAGAAATTTTTCAGTGGGATTGGTTCACGTCAGGGGGAGACATGGCATG 1126 Query 1129 TATCACCTAACAGCGACCGTTGGTCAAGAACGTGGGGAGAGGAACACTTTGGAAACGGAA 1188 ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 1127 TATCACCTAACAGCGACCGTTGGTCAAGAACATGGGGAGAGGAACATTTTGGAAACGGAA 1186 Query 1189 AGGTTCACAAGTACGGAAAGAGTACCACAGGAGAAAGCTGGGACATAGTGGTGGATGAAG 1248 ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct 1187 AGGTTCACAAGTACGGAAAGAGTACGACAGGAGAAAGCTGGGACATAGTCGTGGATGAAG 1246 Query 1249 AAACATACTATGAGGCTGAGCCACATTATGGGTGGGCAGATGTGGTAGGTGATTCAACAC 1308 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1247 AAACATACTACGAGGCTGAGCCACATTATGGGTGGGCAGATGTGGTAGGTGATTCAACAC 1306 Query 1309 AGTTGCTTTCGATCCAACCACGAGAGAGACCTCCGGGTGTCTACCCAAACCTCGAGTTTG 1368 ||||||| || ||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 1307 AGTTGCTCTCAATCCAGCCCCGAGAGAGACCTCCGGGTGTCTACCCAAACCTCGAGTTTG 1366 Query 1369 GGCCATCTCCACCTCCTGAGCCTGACCTACCCCCTGACCAACCACAATGACATCACATCT 1428 | |||||||| |||||||| ||||||| |||||||||| ||||||||||||| ||||||| Sbjct 1367 GACCATCTCCGCCTCCTGAACCTGACCAACCCCCTGACGAACCACAATGACACCACATCT 1426 Query 1429 GTTTGTTTAGCTTATT-AGCGTAATAGCCTTTTTGCTTTATCATTTTTTCGATAAATTTA 1487 |||||||||||||||| ||| ||||| |||||||||||| |||||||||||||||||||| Sbjct 1427 GTTTGTTTAGCTTATTTAGCATAATAACCTTTTTGCTTTGTCATTTTTTCGATAAATTTA 1486 Query 1488 GAATGTTGTGAATTATGGGTG-AGATGATATAATTCTTGATCCA 1530 |||||||||||||||||||| | |||||||||||||||||||| Sbjct 1487 GAATGTTGTGAATTATGGGTTTATATGATATAATTCTTGATCCA 1530 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57668630930 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5