BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G42540.1
Length=3051
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913525 jgi|Araly1|913525|Al_scaffold_0001_3779 3995 0.0
> Ahg913525 jgi|Araly1|913525|Al_scaffold_0001_3779
Length=2814
Score = 3995 bits (2163), Expect = 0.0
Identities = 2606/2821 (92%), Gaps = 26/2821 (1%)
Strand=Plus/Plus
Query 250 ATGAAGCAACTCTGGACTTTCTTCTTCTTGTCTTTCCTTTGTAGTGGATTGTTCAGAAGA 309
||||||||||||||| |||| || |||||||||| |||||||| ||||||||||| || |
Sbjct 1 ATGAAGCAACTCTGGGCTTTGTTGTTCTTGTCTTGCCTTTGTACTGGATTGTTCACAA-A 59
Query 310 A-CACATTCTGAGAAACCAAAAGTTGTGAAAATCGGTTCTATATTCAGTTTTGATTCAGT 368
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 AGCACATTCTGAGAAACCAAAAGTTGTGAAAATCGGTTCTATATTCAGTTTTGATTCAGT 119
Query 369 TATTGGCAAAGTTGCTAAGATCGCTATTGATGAAGCAGTAAAAGATGTGAATTCAAATCC 428
|| ||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| ||
Sbjct 120 GATCGGCAAAGTTGCTAAGATTGCTATTGATGAGGCAGTGAAAGATGTGAATTCAAACCC 179
Query 429 AGACATTCTCAGCGGAACAAAGTTTTCTGTTTCGATGCAAAACTCTAACTGCAGCGGTTT 488
|||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 180 AGACATTCTCAGAGGAACAAAGCTTTCTGTTTCGATGCAAAACTCTAATTGCAGCGGTTT 239
Query 489 TATGGGCATGGTTGAAGCATTGAGGTTTATGGAGAAAGATATAGTTGGGATTATAGGACC 548
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 240 TATGGGCATGGTTGAAGCATTGCGGTTTATGGAGAAGGATATAGTTGGGATTATAGGACC 299
Query 549 ACAATGTTCTGTAGTAGCTCATATGATATCTCATATGGCTAACGAACTTCGTGTACCGCT 608
||||||||||||||| ||||||||||||||||||||||| |||||||||| ||| || ||
Sbjct 300 ACAATGTTCTGTAGTTGCTCATATGATATCTCATATGGCAAACGAACTTCATGTGCCTCT 359
Query 609 TCTTTCGTTTGCTGTAACCGATCCCGTAATGTCGCCGTTACAGTTTCCGTATTTCATTAG 668
||||||||||||||| || ||||| ||||||||||||||||||||||||||||| |||||
Sbjct 360 TCTTTCGTTTGCTGTTACGGATCCTGTAATGTCGCCGTTACAGTTTCCGTATTTTATTAG 419
Query 669 GACTACTCAGAGTGATTTATATCAAATGGATGCAATAGCATCCATTGTAGATTTTTATGG 728
||| |||||||| ||||||||||| |||||||| || || || ||||| ||||| |||||
Sbjct 420 GACGACTCAGAGCGATTTATATCAGATGGATGCTATTGCTTCTATTGTTGATTTCTATGG 479
Query 729 TTGGAAAGAAGTTATTGCTGTGTTTGTTGATGATGATTTCGGTAGGAACGGTGTTGCTGC 788
|||||||||||| |||||||||||||| |||||||||||||| ||||| ||||| |||||
Sbjct 480 TTGGAAAGAAGTAATTGCTGTGTTTGTGGATGATGATTTCGGAAGGAATGGTGTGGCTGC 539
Query 789 GTTGAACGATAAGCTTGCGAGTAGGAGATTGAGAATTACTTATAAGGCGGGTTTACATCC 848
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 540 GTTGAACGATAAGCTTGCGAGTAGGAGATTGAGAATTACTTATAAGGCTGGTTTACATCC 599
Query 849 TGACACGGCTGTTAATAAGAATGAGATCATGAACATGCTGATAAAGATCATGTTGCTTCA 908
|| || ||||| ||||||| ||||||||||||||||| || |||||||||||||||||
Sbjct 600 CGATACCGCTGTGGATAAGAACGAGATCATGAACATGCTAATCAAGATCATGTTGCTTCA 659
Query 909 ACCGAGGATTGTTGTGATACATGTTTATTCGGAGTTGGGGTTCGCGGTTTTTAAGGAGGC 968
||||||||| |||||||||||||||| ||||| ||||| || |||||||||||||||||
Sbjct 660 GCCGAGGATTATTGTGATACATGTTTACTCGGAATTGGGTTTTGCGGTTTTTAAGGAGGC 719
Query 969 TAAGTATCTTGGAATGATGGGAAATGGATATGTTTGGATCGCTACGGATTGGCTCTCTAC 1028
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 720 TAAGTATCTTGGAATGATGGGAAATGGGTATGTTTGGATCGCTACGGATTGGCTCTCCAC 779
Query 1029 GAATCTTGACTCTTCTTCGCCGTTACCCGCTGAGAGGTTGGAAACTATTCAAGGTGTTCT 1088
||||||||||||||| || | | ||||||||||| | |||||||||||||||||||||||
Sbjct 780 GAATCTTGACTCTTCCTCTCTGCTACCCGCTGAGCGATTGGAAACTATTCAAGGTGTTCT 839
Query 1089 TGTTCTGCGTCCACACACGCCGGATTCGGA-TTTTAAACGGGAGTTTTTCAAGAGGTGGC 1147
|||| ||||||| |||||||| ||||| | ||| |||||||||||||||||||||||||
Sbjct 840 TGTTTTGCGTCCGCACACGCCTGATTC-TAGTTTGAAACGGGAGTTTTTCAAGAGGTGGC 898
Query 1148 GTAAGATGTCTGGTGCTTCTTTGGCTCTTAATACATATGGACTCTATGCTTATGATTCTG 1207
||||| | || |||||||||||||||||||| ||||||| || ||||||||||||||||
Sbjct 899 GTAAGGTTTCCGGTGCTTCTTTGGCTCTTAACACATATGCTCTATATGCTTATGATTCTG 958
Query 1208 TTATG-TTGTTAGCCCGGGGTTTAGATAAGTTCTTTAAAGACGGTGGGAATATATCGTTT 1266
||||| || ||||| || ||||||||||||||||| |||||||||||||| |||||||||
Sbjct 959 TTATGCTT-TTAGCGCGTGGTTTAGATAAGTTCTTCAAAGACGGTGGGAAAATATCGTTT 1017
Query 1267 TCGAATCACTCAATGCTCAATACGT-TGGGAAAAAGCGGAAATCTCAACT-TAGAGGCTA 1324
|| |||||||||||||| ||||| | ||||||| |||||||||||||| | | || || |
Sbjct 1018 TCTAATCACTCAATGCTTAATAC-TCTGGGAAAGAGCGGAAATCTCAA-TCTCGAAGCAA 1075
Query 1325 TGACTGTCTTTGATGGTGGAGAAGCACTGCTTAAAGATATCCTCGGAACGCGTATGGTTG 1384
|||| |||||||||||||||||| | |||||||| |||||||||||||||||||||||||
Sbjct 1076 TGACCGTCTTTGATGGTGGAGAAACTCTGCTTAAGGATATCCTCGGAACGCGTATGGTTG 1135
Query 1385 GTTTAACGGGACAGCTTCAGTTCACTCCAGACAGGTCTCGGACCCGTCCAGCTTACGATA 1444
||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1136 GTTTAACAGGACAGCTTCAGTTCACTCCGGACAGGTCTCGGACCCGTCCAGCTTATGATA 1195
Query 1445 TTATCAATGTGGCGGGAACCGGTGTTCGTCAAATAGGCTACTGGTCAAATCATTCTGGTT 1504
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1196 TTATCAATGTGGCCGGAACCGGTGTTCGCCAAATAGGCTACTGGTCAAATCATTCTGGTT 1255
Query 1505 TATCAACTGTATTACCTGAGTTACTCTACACAAAGGAGAAACCAAATA-------T-GT- 1555
||||||| |||| ||| |||| |||||| ||||||||| ||||||||| | ||
Sbjct 1256 TATCAACCGTATCACCCGAGTCACTCTATACAAAGGAGCAACCAAATATGTCTTCTGGTA 1315
Query 1556 CAACAAGTCCGAAACTAAAGCATGTCATTTGGCCGGGAGAAACGTTTACGAAACCTCGCG 1615
|||||||||||||||||| |||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 1316 CAACAAGTCCGAAACTAAGGCATGTGATTTGGCCGGGAGAAACATTTACAAAACCTCGCG 1375
Query 1616 GATGGGTTTTCTCTAACAATGGGAAAGAACTCAAGATTGGCGTGCCTCTTCGCGTTAGTT 1675
|||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||
Sbjct 1376 GATGGGTTTTCTCTAACAATGGTAAAGAACTCAAGATTGGCGTGCCTCGCCGCGTCAGTT 1435
Query 1676 ACAAGGAGTTTGTATCACAAATTCGCGGAACCGAGAACATGTTCAAAGGGTTTTGCATTG 1735
||||||||||||||||||||||||| ||||||||||| || ||||||||||| |||||||
Sbjct 1436 ACAAGGAGTTTGTATCACAAATTCGTGGAACCGAGAATATATTCAAAGGGTTCTGCATTG 1495
Query 1736 ATGTCTTCACGGCTGCAGTGAATCTTTTACCGTACGCAGTTCCTGTCAAGTTTATTCCTT 1795
|||||||||| ||||||||||| |||||||| |||||||| |||||||||||||||||||
Sbjct 1496 ATGTCTTCACAGCTGCAGTGAACCTTTTACCTTACGCAGTCCCTGTCAAGTTTATTCCTT 1555
Query 1796 ATGGAAATGGAAAGGAGAATCCGAGCTACACGCATATGGTTGAGATGATAACAACTGGTA 1855
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1556 ATGGAAACGGAAAGGAGAATCCGAGCTACACGCATATGGTTGAGATGATAACAACTGGTA 1615
Query 1856 ATTTTGATGGGGTAGTAGGTGATGTTGCCATTGTAACAAACCGGACAAAGATTGTAGATT 1915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1616 ATTTTGATGGGGTAGTAGGTGATGTTGCCATTGTAACAAACCGGACAAAGATTGTAGATT 1675
Query 1916 TCACACAACCATATGCAGCATCAGGACTAGTTGTAGTTGCACCTTTTAAAAAACTGAATT 1975
|||||||||| ||||||||||| ||||||||||| ||||| |||||||||||||||||||
Sbjct 1676 TCACACAACCGTATGCAGCATCTGGACTAGTTGTTGTTGCTCCTTTTAAAAAACTGAATT 1735
Query 1976 CAGGAGCCTGGGCTTTTCTTCGACCTTTCAACCGTCTTATGTGGGCTGTCACGGGTTGTT 2035
||||||| ||||||||||||||||||||||| || ||||||||||| |||||||||||||
Sbjct 1736 CAGGAGCTTGGGCTTTTCTTCGACCTTTCAATCGACTTATGTGGGCAGTCACGGGTTGTT 1795
Query 2036 GCTTTCTCTTTGTTGGCATTGTTGTTTGGATCTTGGAACATAGGACTAACGATGAATTCA 2095
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1796 GTTTTCTCTTTGTTGGCATTGTTGTTTGGATCTTGGAACATAGGACTAACGATGAATTCA 1855
Query 2096 GAGGCCCACCTAAGAGACAATGTGTCACAATTCTCTGGTTTAGCTTCTCGACCATGTTTT 2155
||||||| || ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1856 GAGGCCCGCCGAAGAGACAATGCGTCACAATTCTTTGGTTTAGCTTCTCGACCATGTTTT 1915
Query 2156 TCGCGCATAGAGAGAACACAGTTAGTACACTTGGACGGTTGGTTCTGATCATATGGCTAT 2215
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1916 TCGCGCATAGAGAGAACACAGTTAGTACACTTGGGCGGTTGGTTCTGATCATATGGCTAT 1975
Query 2216 TCGTTGTACTAATCATCAACTCGAGCTACACGGCTAGTCTGACATCGATAT-TGACGGTT 2274
||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1976 TCGTTGTACTAATTATCAACTCGAGCTACACGGCTAGTCTGACATCGAT-TCTGACGGTT 2034
Query 2275 CAGCAGCTCTCTTCACCCATCAAGGGAATTGAAAGCCTTAGAGAAAGAGATGATCCAATA 2334
||||||||||| || |||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 2035 CAGCAGCTCTCATCCCCCATCAAGGGAATTGAAAGCCTTAGAGAAAGGGATGATCCGATC 2094
Query 2335 GGGTACCAGGTTGGTTCATTTGCAGAGAGTTATTTGAGGAACGAACTCAACATATCAGAG 2394
||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 2095 GGGTACCAGGTGGGTTCGTTTGCAGAGAGTTATTTGAGGAATGAACTTAACATATCAGAG 2154
Query 2395 TCACGCCTAGTCCCACTTGGAACACCTGAAGCCTATGCTAAGGCATTAAAAGATGGACCA 2454
||||| || ||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 2155 TCACGGCTCGTCCCACTTGGAACACCTGAAGCCTATGCCAAGGCTTTAAAAGATGGACCA 2214
Query 2455 AGCAAAGGAGGCGTTGCCGC-GATTGTTGACGAACGTCCTTATGTCGAACTCTTCCTCTC 2513
||||||||||| ||||| || | |||||||||| ||||| ||| | ||||||||||||||
Sbjct 2215 AGCAAAGGAGGTGTTGCTGCAG-TTGTTGACGAGCGTCCCTATATAGAACTCTTCCTCTC 2273
Query 2514 CAGCAACTGCGCTTATAGAATCGTTGGTCAAGAGTTCACCAAAAGTGGCTGGGGATTTGC 2573
|||||||||||| ||||| ||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 2274 CAGCAACTGCGCCTATAGGATCGTCGGTCAGGAGTTCACCAAAAGCGGCTGGGGATTTGC 2333
Query 2574 CTTTCCTAGAGACTCTCCTCTAGCAATAGATCTATCAACAGCGATCTTAGAGCTAGCAGA 2633
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 2334 ATTTCCTAGAGACTCTCCTCTTGCAATAGATCTATCAACAGCGATCTTAGAGCTGGCAGA 2393
Query 2634 GAACGGAGATTTGCAAAGGATCCACGACAAATGGCTAATGAAGAACGCATGCACTCTAGA 2693
|||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 2394 AAACGGAGATTTGCAGAGGATCCACGACAAATGGCTAATGAAGAACGCATGCTCTCTGGA 2453
Query 2694 GAACGCGGAGCTCGAATCAGACAGGCTTCATCTAAAAAGCTTTTGGGGACTATTTCTCAT 2753
||| |||||||| ||||||||||||||||| ||||| ||||| |||||||| ||||||||
Sbjct 2454 GAATGCGGAGCTTGAATCAGACAGGCTTCACCTAAAGAGCTTCTGGGGACTGTTTCTCAT 2513
Query 2754 ATGCGGCGTCGCGTGCCTCCTCGCTCTCTTCCTATACTTTGTTCAGATCATCCGTCAGCT 2813
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2514 ATGCGGTGTTGCGTGCCTCCTCGCTCTCTTCCTATACTTTGTTCAGATCATCCGTCAGCT 2573
Query 2814 CTATAAAAAGCCAACCGATGATGCCATTGCAAGAGATCAACAGCAGAATCATGACTCTTC 2873
|||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||| ||
Sbjct 2574 CTATAAAAAGCCAAGCGATGATGCCATTGCAAGAGATCAGCAGCAGAATCATGTCTCCTC 2633
Query 2874 CTCCATGCGCTCCACTCGTTTGCAAAGATTCTTGTCTCTCATGGATGAGAAAGAAGAGTC 2933
||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 2634 CTCCATGCGTTCCACTCGTCTGCAAAGATTCTTGTCCCTCATGGATGAGAAAGAAGAGTC 2693
Query 2934 CAAGCACGAAAGCAAGAAGAGAAAGATCGATGGTTCAATGAACGATACATC-G--GGATC 2990
||||| || |||||||||||||||||||||||| |||||||||||| | || | |||||
Sbjct 2694 CAAGCCCGGAAGCAAGAAGAGAAAGATCGATGGATCAATGAACGATGCTTCAGCAGGATC 2753
Query 2991 AACACGATCACGAGGTTTCGATAGAGAAAGAAGCTTCAATTCGGTAAATCCATTAGACTG 3050
|||||||||||||| ||||| |||||||||||| ||||||||||||| |||||||| ||
Sbjct 2754 GACACGATCACGAGGATTCGACAGAGAAAGAAGCCTCAATTCGGTAAACCCATTAGATTG 2813
Query 3051 A 3051
|
Sbjct 2814 A 2814
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115222991125
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5