BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G42550.1 Length=2867 Score E Sequences producing significant alignments: (Bits) Value Ahg922817 jgi|Araly1|922817|scaffold_104098.1 3842 0.0 > Ahg922817 jgi|Araly1|922817|scaffold_104098.1 Length=2572 Score = 3842 bits (2080), Expect = 0.0 Identities = 2414/2577 (94%), Gaps = 16/2577 (1%) Strand=Plus/Plus Query 99 cttctt-cttcttcttctACATGGCAGGAGAATATTCCGGTAGCCGGAGTTCTAACACAC 157 |||||| | |||| || | ||||||||||||||||||||||||||||||||||||||| | Sbjct 4 CTTCTTAC-TCTT-TT-TTCATGGCAGGAGAATATTCCGGTAGCCGGAGTTCTAACACGC 60 Query 158 AGCTTCTCGCGGAACTTGAAGCTCTAAGTGAAAACCTTTACCAGAAACCTCAGGTTTCAG 217 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 AGCTTCTCGCGGAACTCGAAGCTCTAAGTGAAAACCTTTACCAGAAACCTCAGGTTTCAG 120 Query 218 TTGGAAACAGGAGAACAAACTCTCTCGCTCTCCCTCGGAGTTCTGTTCCGTCGCTTGTTA 277 | |||||| ||||||| ||||||||||||||||| || ||||||||||| |||||||||| Sbjct 121 TCGGAAACCGGAGAACCAACTCTCTCGCTCTCCCGCGCAGTTCTGTTCCATCGCTTGTTA 180 Query 278 CCTCTGCTGATGAAGTGAGTACAGCACGAGCTGAGGATTTGACAGTATCGAAGCCGCGGG 337 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 181 CCTCTGCCGATGAAGTGAGTACAGCACGAGCTGAGGATTTGACAGTATCGAAGCCACGGG 240 Query 338 CTCGGCGTTTATCGCTGTCTCCGTGGCGGTCGAGACCGAAACTTGAGGTAGAGGAGGAAG 397 |||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 241 CTCGGCGTTTGTCGCTGTCTCCGTGGCGGTCGAGACCCAAGCTTGAGGTAGAGGAGGAAG 300 Query 398 AGAATGTTACTCAGAGCAACAGGATTGTCAAGAAACCAGAGGAGTCGTCATCGGGTTCGG 457 | ||||| ||||||| |||||||||||||||||||||||||||||| || ||||| |||| Sbjct 301 ATAATGTGACTCAGAACAACAGGATTGTCAAGAAACCAGAGGAGTCATCGTCGGGCTCGG 360 Query 458 GTGTGAAGGAAGAGAAGAAAGGGATTTGGAATTGGAAGCCGATTCGAGGGCTGGTTCGGA 517 || ||||| ||||| |||||||| |||||||||||||||||||||||||| ||||||| Sbjct 361 TTGCCAAGGATGAGAAAAAAGGGATATGGAATTGGAAGCCGATTCGAGGGCTAGTTCGGA 420 Query 518 TTGGTATGCAGAAGCTAAGCTGTTTGTTATCAGTGGAGGTTGTGGCGGCGCAGAATCTTC 577 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 421 TTGGTATGCAGAAGCTAAGTTGTTTGTTATCAGTGGAGGTTGTGGCGGCGCAGAATCTTC 480 Query 578 CAGCGTCGATGAATGGTTTACGCCTTGGAGTTTGCGTGAGGAAGAAGGAAACTAAAGACG 637 | || || ||||| ||| |||||||||||||||||||||||||||||||||| ||||||| Sbjct 481 CGGCCTCAATGAACGGTCTACGCCTTGGAGTTTGCGTGAGGAAGAAGGAAACAAAAGACG 540 Query 638 GTGCTGTTCAGACGATGCCGTGTAGGGTTTCTCAGGGTTCTGCTGATTTTGAGGAGACCT 697 |||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||| | Sbjct 541 GTGCCGTTCAGACGATGCCCTGTAGGGTTTCTCAGGGTTCTGCGGATTTTGAGGAGACAT 600 Query 698 TGTTTATCAAGTGCCATGTGTATTACTCACCGGCGAACGGTAAAGGTAGTCCAGCGAAGT 757 |||| ||||||||||||||||| ||| ||||||||||||| ||||||||||| ||||||| Sbjct 601 TGTTCATCAAGTGCCATGTGTACTACACACCGGCGAACGGAAAAGGTAGTCCGGCGAAGT 660 Query 758 TTGAGGCTCGTCCGTTTTTGTTTTATCT-TTTCGCCGTGGATGCCAAGGAACTGGAGTTT 816 |||||||||||||||||||||||||||| ||| |||||||| ||||||||| |||||||| Sbjct 661 TTGAGGCTCGTCCGTTTTTGTTTTATCTCTTT-GCCGTGGACGCCAAGGAATTGGAGTTT 719 Query 817 GGAAGGCATGTGGTGGATTTGAGTGAGTTGATTCAGGAGTCGGTAGAGAAGATGAATTAC 876 ||||||||||||||||||||||| || ||||||||||||||||||| |||||||| ||| Sbjct 720 GGAAGGCATGTGGTGGATTTGAGCGAATTGATTCAGGAGTCGGTAGGGAAGATGAGTTAT 779 Query 877 GAAGGAGCTAGGGTTAGGCAATGGGATATGAATTGGGGACTTTCAGGGAAGGCTAAAGGG 936 ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| Sbjct 780 GAAGGAGCTAGGGTTAGGCAATGGGATATGAGTTGGGGGCTTTCAGGGAAGGCTAAAGGA 839 Query 937 GGTGAATTGGCTTTGAAATTAGGGTTTCAGATTATGGAGAAAGACGGTGGAGCTGGGATT 996 |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 840 GGTGAATTGGCTCTGAAATTAGGGTTTCAGATCATGGAGAAAGACGGTGGAGCTGGGATT 899 Query 997 TACAGTAAACAAGGCGAATTCGGGATGAAACCGAGTAGTAAACCTAAGAATTTCGCTAAT 1056 |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 900 TACAGTAAACAAGGAGAATTCGGGATGAAACCGAGTAGTAAACCTAAGAATTTTGCTAAT 959 Query 1057 TCCTTCGGTCGAAAGCAATCGAAGACGTCGTTTAGTGTTCCGAGCCCTAAA-ATGACGAG 1115 |||||||| ||||||||||||||||||||||||||||| |||||||| ||| |||||||| Sbjct 960 TCCTTCGGGCGAAAGCAATCGAAGACGTCGTTTAGTGTGCCGAGCCC-AAAGATGACGAG 1018 Query 1116 CCGGAGCGAGGCGTGGACGCCAGCGAGTGGTGTGGAGTCAGTTTCGGATTTTCACGGGAT 1175 |||||||||||| ||||||||||||||||| | ||||||||| | ||| |||| ||||| Sbjct 1019 CCGGAGCGAGGCCTGGACGCCAGCGAGTGGCGCGGAGTCAGTAACAGATCTTCAAGGGAT 1078 Query 1176 GGAGCATTTGAATCTGGATGAACCTGAGGAGAAACCCGAGGAGAAACCGGTTCAGAAAAA 1235 ||||||||||||||| |||||||| |||||||||||||| | ||||||||||||| |||| Sbjct 1079 GGAGCATTTGAATCTAGATGAACCCGAGGAGAAACCCGAAGTGAAACCGGTTCAG-AAAA 1137 Query 1236 C-GACAAACCGGAACAGAGAGCTGAAGATGATCAAGAGGAACCAGATTTTGAAGTTGTGG 1294 | || |||| |||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1138 CAGAGGAACCAGAACAGAGAGCTGAAGATGATCAAGAGGAACCTGATTTTGAAGTTGTGG 1197 Query 1295 ATAAAGGAGTTGAGTTTGATGATGACTTGGAAACTGAGAAATCTGATGGAACCATAGGTG 1354 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1198 ATAAAGGAGTTGAGTTTGATGATGACTTGGAAACTGAGAAATCTGATGGAACCATAGGGG 1257 Query 1355 AAAGATCTGTTGAGATGAAGGAACAACATGTTAATGTTGATGATCCACGGCACATAATGA 1414 ||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||| Sbjct 1258 AAAGATCCGTTGAGATGAAGGAACAACATGTTAATGTTGATGATGCTCGGCACATAATGA 1317 Query 1415 GACTCACCGAGCTTGATTCAATTGCAAAGCAGATCAAAGCGCTTGAATCGATGATGAAAG 1474 |||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1318 GACTTAGCGAGCTTGATTCGATTGCAAAGCAGATCAAAGCGCTTGAATCGATGATGAAAG 1377 Query 1475 ACGAGAGTGATGGAGGTGATGGTGAAACAGAGTCACAAAGGCTAGATGAAGAGGAACAAA 1534 |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1378 ACGAGAATGATGGAGGAGATGGTGAAACAGAGTCACAAAGGCTAGATGAAGAGGAACAAA 1437 Query 1535 CTGTGACAAAGGAGTTTCTTCAGTTACTTGAGGATGAAGAAACCGAGAAGCTGAAATTTT 1594 | ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| | Sbjct 1438 CGGTGACAAAGGAGTTTCTTCAGTTGCTTGAGGATGAAGAAACCGAGAAGCTCAAATTCT 1497 Query 1595 ATCAGCACAAAATGGACATCTCTGAACTGCGGTCTGGCGAATCCGTAGACGATGAATCGG 1654 | ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| | Sbjct 1498 ACCAGCACAAAATGGACATCTCTGAACTGCGGTCTGGCGAATCGGTAGATGATGAATCTG 1557 Query 1655 AGAATTACCTCTCGGATCTCGGTAAAGGCATTGGTTGCGTTGTTCAGAC-ACGAGACGGT 1713 ||||||||||||| |||||||| |||||||| ||||||||||||||||| | |||||||| Sbjct 1558 AGAATTACCTCTCAGATCTCGGGAAAGGCATCGGTTGCGTTGTTCAGACGA-GAGACGGT 1616 Query 1714 GGTTACTTAGTCTCTATGAACCCTTTCGACACGGTGGTCATGAGGAAAGACACTCCTAAG 1773 ||||||||||| |||||||||||||||||| |||| || ||||||||||||||||||||| Sbjct 1617 GGTTACTTAGTTTCTATGAACCCTTTCGACGCGGTCGTTATGAGGAAAGACACTCCTAAG 1676 Query 1774 CTTGTTATGCAAATCTCCAAACAGATTGTGGTACTACCAGAAGCCGGACCAGCCACTGGA 1833 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1677 CTTGTTATGCAAATCTCGAAACAGATTGTGGTACTACCAGAAGCCGGACCAGCCACTGGA 1736 Query 1834 TTCGAGCTATTTCATAGAATGGCGGGTTCGGGTGAGGAACTAGAGTCAAAGATATCTTCG 1893 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1737 TTCGAGCTATTTCATAGAATGGCGGGTTTGGGTGAGGAACTAGAGTCAAAGATATCTTCG 1796 Query 1894 CTTATGGCGATAGATGAGCTAATGGGGAAAACAGGGGAGCAAGTGGCTTTTGAAGGAATA 1953 |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1797 CTTATGGCGATAGACGAGCTAATGGGGAAAACAGGGGAGCAAGTGGCTTTCGAAGGAATA 1856 Query 1954 GCGTCAGCGATTATACAAGGGAGGAACAAAGAGAGAGCTAACACGAGCGCAGCGCGAACT 2013 ||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||| ||| Sbjct 1857 GCGTCAGCGATTATACAGGGGAGGAACAAAGAGAGAGCGAACACTAGCGCAGCGCGGACT 1916 Query 2014 GTCGCAGCTGTTAAAACAATGGCTAACGCGATGAGCAGCGGAAGAAGGGAGAGAATAATG 2073 || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1917 GTTGCAGCTGTTAAAACAATGGCTAACGCAATGAGCAGCGGAAGAAGGGAGAGAATAATG 1976 Query 2074 ACCGGTATATGGAATGTGGAGGAGAATCCATTGACTTCGGCAGAGGAGGTTTTAGCCGTC 2133 ||||| || ||||| ||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 1977 ACCGGAATCTGGAACGTGGAGGAGAATCCACTGACGTCGGCAGAGGAGGTTTTAGCCGTC 2036 Query 2134 TCTTTACAGAAACTAGAGGAAATGGTTGTTGAAGGACTTAAGATTCAAGCTGACATGGTG 2193 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 2037 TCTTTACAGAAACTAGAGGAAATGGTGGTTGAAGGACTAAAGATTCAAGCTGACATGGTG 2096 Query 2194 GATGATGAAGCTCCTTTCGAGGTTTCGGCTGCGAAAGGTCAGAAGAATCCACTTGAATCG 2253 |||||||| || |||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 2097 GATGATGATGCACCTTTCGAGGTTTCCGCTGCCAAAGGTCAGAAGAATCCACTTGAATCG 2156 Query 2254 ACCATTCCGCTGGAAGAATGGCAAAAGGAGCATCGCACACAGCAAAAGCTAACGGTTTTG 2313 |||||||| || || || |||| ||||||| ||||||||||| |||||||||| ||||| Sbjct 2157 ACCATTCCACTTGACGAGTGGCTAAAGGAGAATCGCACACAGAAAAAGCTAACACTTTTG 2216 Query 2314 GCGACAGTACAGCTCCGTGACCCGACAAGGAGATATGAGGCTGTAGGAGGGACAGTTGTG 2373 ||||||||||||||||||||||||||||||||||| || || || ||||||||||| ||| Sbjct 2217 GCGACAGTACAGCTCCGTGACCCGACAAGGAGATACGAAGCGGTGGGAGGGACAGTGGTG 2276 Query 2374 GTAGCAGTACAAGCGGAAGAGGAGGAGGAGAAAGGGTTAAAGGTAGGAAGTTTGCACATT 2433 || ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 2277 GTGGCAGTACAAGCGGAAGAAGAGGAAGAGAAAGGGTTAAAGGTAGGAAGTTTGCACATT 2336 Query 2434 GGGGGAGTGAAGAAAGATGCGGCGGAGAAGCGGAGGCTTACCGCGGCGCAATGGCTTGTG 2493 ||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||| Sbjct 2337 GGGGGAGTGAAAAAAGATGCGGCAGAGAAGCGGAGGCTTATGGCGGCGCAATGGCTTGTG 2396 Query 2494 GAACACggaatgggaaagaaagggaagaagaagagtaatataaagaagaaggagaaggaa 2553 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2397 GAACACGGAATGGGAAAGAAAGGGAAGAAGAAGAGTAATATAAAGAAGAAGGAGAAGGAA 2456 Query 2554 gaagaagaagaggagaTGTTGTGGAGCTTGTCATCTAGAGTAATGGCGGATATGTGGCTT 2613 |||||||| || | |||||||||||||||||||||||||||||||||||||||||||| Sbjct 2457 GAAGAAGAGGA--A-ATGTTGTGGAGCTTGTCATCTAGAGTAATGGCGGATATGTGGCTC 2513 Query 2614 AAATCTATAAGGAACCCTGATGTGAAATTGCATTAGTTGATCTTGGAGGTATTCATA 2670 ||||||||||||||||||||||||| ||||||| || ||||||| ||| |||||||| Sbjct 2514 AAATCTATAAGGAACCCTGATGTGAGATTGCAT-AGCTGATCTTTGAGATATTCATA 2569 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 108214386045 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5