BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G42970.1
Length=1774
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473747 jgi|Araly1|473747|fgenesh2_kg.1__3701__AT1G42970.1 2793 0.0
Ahg471443 jgi|Araly1|471443|fgenesh2_kg.1__1397__AT1G12900.1 374 2e-102
> Ahg473747 jgi|Araly1|473747|fgenesh2_kg.1__3701__AT1G42970.1
Length=1758
Score = 2793 bits (1512), Expect = 0.0
Identities = 1686/1768 (95%), Gaps = 19/1768 (1%)
Strand=Plus/Plus
Query 1 TCCCCATATGTATCTTACCTACATAATAGCCACATATTACTTTGCTTCACTTTGAACCAT 60
|||| || |||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 1 TCCCGATTTGTATCTTACCTACATAATAACCACATATTTCTTTGCTTCACTTTGAACCAT 60
Query 61 TGGTTGGTTTTGATCAAAACCAAAGGATGTGTGTATGTATGTATATATTCTAACGCTCAA 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGGTTGCTTTTGATCAAAACCAAAGGATGTGTGTATGTATGTATATATTCTAACGCTCAA 120
Query 121 AACTGATCACTAGCATTCCTAGATTTTTCCTTCTTGTGATCACTTGCAGCTATGGCCACA 180
||||||||| |||||||| |||| || |||||||| |||||||||||||||||||||
Sbjct 121 AACTGATCAGTAGCATTCGTAGA---TT-CTTCTTGT-TTCACTTGCAGCTATGGCCACA 175
Query 181 CATGCAGCTCTCGCCGTCTCAAGAATCCCGGTCACACAGCGACTGCAGTCTAAGAGTGCC 240
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 176 CATGCAGCTCTCGCCGTCTCCAGAATCCCGGTCACACAGAGACTGCAGTCTAAGAGTGCC 235
Query 241 ATTCACTCTTTCCCTGCTCAATGCTCCTCCAAGAGGCTAGAAGTCGCTGAATTCTCCGGT 300
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 236 ATTCACTCTTTCCCTGCTCAATGCTCCTCCAAGAGGCTAGAAGTTGCTGAATTCTCCGGT 295
Query 301 CTGCGTATGAGTAGTATCGGTGGGGAAGCATCTTTCTTCGATGCTGTAGCTGCACAAATC 360
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 CTGCGTATGAGTAGTAACGGTGGGGAAGCATCTTTCTTCGATGCTGTAGCTGCACAAATC 355
Query 361 ATCCCTAAGGCTGTGACAACATCAACTCCTGTTAGAGGAGAGACAGTGGCGAAACTGAAA 420
||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 356 ATCCCCAAGGCTGTGACAACATCCACTCCTGTTAGAGGAGAGACAGTGGCCAAACTGAAG 415
Query 421 GTTGCGATTAACGGTTTTGGAAGGATTGGTAGGAACTTTCTTAGGTGTTGGCATGGTCGT 480
|||||||||||||| || ||| |||||||||||||||| || ||||||||||||||||||
Sbjct 416 GTTGCGATTAACGGGTTCGGACGGATTGGTAGGAACTTCCTCAGGTGTTGGCATGGTCGT 475
Query 481 AAAGACTCTCCTCTCGAAGTTGTTGTACTTAACGACAGTGGTGGTGTCAAGAATGCATCC 540
|| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 476 AAGGACTCTCCTCTCGAAGTTGTTGTGCTTAATGACAGTGGTGGTGTCAAGAATGCATCC 535
Query 541 CACTTGCTTAAGTATGACTCCATGCTTGGAACCTTCAAGGCTGAAGTGAAAATTGTGGAC 600
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 CATTTGCTCAAGTATGACTCCATGCTTGGAACCTTCAAGGCTGAAGTGAAAATTGTGGAC 595
Query 601 AATGAAACTATTAGTGTTGATGGTAAGCTCATCAAAGTTGTCTCCAACAGAGACCCTCTT 660
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 AATGAAACTATCAGCGTTGATGGTAAGCTCATCAAAGTTGTCTCCAACAGAGACCCTCTT 655
Query 661 AAGCTTCCATGGGCTGAGCTCGGCATTGACATTGTTATCGAGGGAACAGGAGTGTTTGTT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 AAGCTTCCATGGGCTGAGCTCGGCATTGACATTGTTATCGAGGGAACAGGAGTGTTTGTT 715
Query 721 GATGGGCCAGGAGCAGGGAAGCATATCCAAGCCGGAGCCTCGAAAGTTATCATCACTGCA 780
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 716 GATGGGCCAGGAGCAGGGAAGCATATCCAAGCTGGAGCCTCGAAAGTGATCATCACTGCA 775
Query 781 CCAGCCAAAGGTGCTGATATCCCTACCTATGTTATGGGAGTCAATGAGCAAGACTATGGT 840
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 776 CCAGCCAAAGGTGCTGATATCCCTACCTATGTTGTGGGCGTCAATGAGCAAGACTATGGT 835
Query 841 CACGATGTCGCTAACATTATTAGCAATGCATCTTGCACCACCAACTGTTTGGCACCTTTT 900
||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||| |||
Sbjct 836 CACGACGTCGCTAACATCATTAGCAATGCATCTTGCACCACCAATTGTTTGGCACCCTTT 895
Query 901 GCTAAAGTCTTGGATGAAGAATTTGGAATTGTCAAGGGGACAATGACAACCACACACTCC 960
|||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 896 GCTAAAGTCTTGGATGAAGAATTTGGTATCGTCAAGGGAACAATGACAACCACACACTCT 955
Query 961 TACACCGGAGACCAAAGGCTTCTAGATGCATCACACAGGGACCTAAGGCGTGCAAGAGCC 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 TACACCGGAGACCAAAGGCTTCTAGATGCATCACACAGGGACCTAAGGCGTGCAAGAGCC 1015
Query 1021 GCAGCACTGAACATAGTGCCTACCAGCACAGGAGCAGCCAAGGCGGTGTCATTAGTGTTG 1080
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1016 GCAGCACTGAACATAGTGCCTACCAGCACAGGTGCAGCCAAGGCGGTCTCATTAGTGTTG 1075
Query 1081 CCGCAGCTGAAGGGTAAACTTAACGGCATTGCACTCCGTGTGCCAACACCAAACGTCTCA 1140
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1076 CCGCAGCTGAAGGGTAAACTCAACGGGATTGCACTCCGTGTGCCAACACCAAACGTCTCA 1135
Query 1141 GTGGTTGACCTTGTTATAAACGTTGAGAAGAAAGGTTTGACAGCAGAGGATGTGAACGAG 1200
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1136 GTGGTTGACCTTGTTATAAACGTTGAGAAGAAAGGTTTGACAGCAGAGGACGTGAACGAG 1195
Query 1201 GCCTTTAGAAAAGCCGCTAATGGACCGATGAAAGGCATTTTAGACGTTTGCGATGCGCCT 1260
||||| |||||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 1196 GCCTTCAGAAAAGCCGCTAATGGACCGATGAAAGGCATTTTAGACGTTTGTGACGCCCCT 1255
Query 1261 CTTGTCTCTGTTGACTTCAGGTGCTCTGATGTCTCTACCACCATTGACTCGTCCCTCACT 1320
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1256 CTTGTCTCTGTTGACTTCAGGTGCTCTGATGTCTCTACCACCATTGATTCTTCCCTCACT 1315
Query 1321 ATGGTTATGGGTGATGATATGGTCAAGGTGGTTGCTTGGTATGATAACGAGTGGGGTTAC 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 ATGGTTATGGGTGATGATATGGTCAAGGTGGTTGCTTGGTATGATAACGAGTGGGGTTAC 1375
Query 1381 AGCCAAAGAGTGGTGGATTTGGCTCACCTAGTGGCTAGCAAGTGGCCGGGAGCGGAAGCT 1440
||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1376 AGCCAAAGAGTAGTGGATTTGGCTCACCTAGTGGCTAGCAAGTGGCCGGGAGAGAAAGCT 1435
Query 1441 GTTGGAAGTGGAGATCCTTTGGAGGATTTCTGCAAGACAAACCCGGCTGATGAGGAATGC 1500
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1436 GTTGGAAGTGGAGATCCTTTGGAGGATTTCTGCAAGACAAACCCGGCCGATGAGGAATGC 1495
Query 1501 AAAGTCTATGACTGAACAACTTTGATCATTTCTTTCTTTATTTTTCACCAAAACAATACT 1560
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 AAAGTCTATGAATGAACAACTTTGATCATTTCTTTCTTTATTTTTCACCAAAACAATACT 1555
Query 1561 TTGTATCATGAGTTACTTATTCGAAATCGTACTATGCATAC-T-T--GTTTTTCTCATAA 1616
||||||||||||||| ||||||||||| ||| ||||||||| | | |||||||||||||
Sbjct 1556 TTGTATCATGAGTTA-TTATTCGAAATTGTATTATGCATACCTCTTTGTTTTTCTCATAA 1614
Query 1617 GATTTTCTTGTCTGATGAACAACTATATGTTAAGACTGA-GAGAATTGTATTTGAGAAAT 1675
|||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||
Sbjct 1615 GATTTTCTTGTCTGATGAGCAACTATATGTTAAGACTGATGAGAAATGTATTTGAGAA-- 1672
Query 1676 AACCATTTTATGCTACATGTTAAAACGGAATTTATTTGAGCAATGTATGACAAAAGAAA- 1734
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1673 --CCATTTTATGCTACATGTTAAAACGGAATTTATTTGAGCAATGTATGACAAAACAAAA 1730
Query 1735 ---TTGTTTGATTTGGTTTACAAATAAA 1759
|||||| |||||||||||||| |||
Sbjct 1731 AAATTGTTTAATTTGGTTTACAAAAAAA 1758
> Ahg471443 jgi|Araly1|471443|fgenesh2_kg.1__1397__AT1G12900.1
Length=1348
Score = 374 bits (202), Expect = 2e-102
Identities = 743/995 (75%), Gaps = 73/995 (7%)
Strand=Plus/Plus
Query 442 AGGATTGGTAGGAACTTTCTT-AGGTGTTGGCATGGTCGTAAAGACTCTCCTCTCGAAGT 500
||||||||||||||| ||||| |||||||||||||||||||| ||||||||||| || ||
Sbjct 220 AGGATTGGTAGGAAC-TTCTTGAGGTGTTGGCATGGTCGTAAGGACTCTCCTCTTGATGT 278
Query 501 TGTTGTAC-TTAACGACAGTGGTGGTG-TCAAGAATGCATCCCACT-TGCTTAAGTATGA 557
||||| | ||||||||| |||||||| | || || ||||| || | | || || || ||
Sbjct 279 CGTTGT-CATTAACGACACTGGTGGTGTTAAACAA-GCATCACA-TCTCCTCAAATACGA 335
Query 558 CTCCA-TGCTTGGAACCTTCAAGGCTGAAGTGAAA-ATTGTGGACAATGAAACTAT-TAG 614
||| | | ||||||| ||| | ||||| || ||| || |||| ||| | || | |
Sbjct 336 CTCAACT-CTTGGAATCTTTGACGCTGATGTCAAACCTTCTGGA-GATGCAGCTCTCT-C 392
Query 615 TGTTGATGGTAAGCTCATCAAAG-TTGTCTC-CAACAG-AGACCC-TCTTAAGCTTCCAT 670
||| ||||| ||| ||||| ||| |||| || | | | | |||| || ||| || || |
Sbjct 393 TGTCGATGGAAAGATCATC-AAGATTGTATCTGATC-GTA-ACCCATC-TAATCTCCCCT 448
Query 671 GGGCTGAGCTCGGCATTGACATT-GTTATCGAGGGAACAGGAGTGTTTGTTGATGGGCCA 729
||| || || ||||||||| || |||||||| ||||| |||||||||||||| | |
Sbjct 449 GGGGGGAACTAGGCATTGAC-TTGGTTATCGAAGGAACCGGAGTGTTTGTTGA-CAGAGA 506
Query 730 -GGAGCAGGGAAGCATATCCAAGCCGGAGCCTCGAAAGTTATCATCACTGCACCAGCCAA 788
|| || || ||||| | || || |||||| ||| ||| | || |||||||| | ||
Sbjct 507 TGGTGCTGGAAAGCACCTTCAGGCTGGAGCCAAGAAGGTTCTAATTACTGCACCTG-GAA 565
Query 789 AGGTGCTGATATCCCTACCTATGTTATGGGAGTCAATG-AGCAAGACTATGGTCACGATG 847
| | | ||| ||||| || ||||| | || ||||||| | || ||| | | | |||
Sbjct 566 AAG-G-TGACATCCCAACTTATGTCGTTGGCGTCAATGCTG-AACTTTATAG-C-C-ATG 619
Query 848 TCGCTAAC-ATTATTAGCAATGCATCTTGCACCACCAACTGTTTGGCACCTTTTGCT-AA 905
| | || || || |||||||| ||||| || || |||||| | || || || | | ||
Sbjct 620 AAGAT-ACAATCATCAGCAATGCGTCTTGTACTACTAACTGTCTCGCTCCATTCG-TCAA 677
Query 906 AG-TCTTGGATGAAG-AATTTGGAATTGTCAAGGGGACAATGACAACCACACACTCCTAC 963
| |||| || || |||| || || | ||||| ||||||||||| || ||||| |||
Sbjct 678 GGTTCTT-GA-CCAGAAATTCGGGATCATAAAGGGTACAATGACAACTACTCACTCATAC 735
Query 964 ACCGGAGACCAAAGGCTT-CTAGATGC-ATCACACAGGGACCTAAGGCGTGCAAGAGCCG 1021
|| || ||||||||| || ||||||| | | ||| | || |||||| | |||||||| |
Sbjct 736 ACTGGTGACCAAAGG-TTGTTAGATGCGAGC-CACCGTGATCTAAGGAGAGCAAGAGCAG 793
Query 1022 CAGCACTGAACATAGTGCCTACCAGC-ACAGGAGCAGCCAAGGCGGT-G-TCATTAGTG- 1077
|||| ||||||| || || | || | |||||||||||||| || || | || || |||
Sbjct 794 CAGCTTTGAACATTGTTCC-AACATCTACAGGAGCAGCCAAAGCTGTGGCTC-TT-GTGC 850
Query 1078 TTGCCGCAGCTGAAGGGTAAACTTAACGGCATTGCACTCCGTGTGCCAACACCAAACGTC 1137
|| || | || || || ||||| || || || ||| | ||||||||||| ||||||||
Sbjct 851 TT-CCTAACCTCAAAGGAAAACTCAATGGAATCGCATTGCGTGTGCCAACTCCAAACGTT 909
Query 1138 TCAGTGGTTGACCTT-GTTATAAACGT-TGAGAAGAA-AGGTTTGACAGCAGAGGATGTG 1194
||||||||||| ||| || | | || | ||||| | |||| | | | | || ||
Sbjct 910 TCAGTGGTTGA-CTTAGTCGTTCAGGTCT-CCAAGAAGACTTTTG-CTG-A-A-GAAGTC 963
Query 1195 AACGAGGCCTTT-AGAAAAGCCGCT-A-ATGGACCGATGAAAGGCATTTTAGACGTTTGC 1251
|| | | |||| ||| | || ||| | | || | | ||||| || | ||||| ||
Sbjct 964 AATGCTG-CTTTCAGAGATGCAGCTGAGAAAGA--GCTTAAAGGTATACTCGACGTCTGT 1020
Query 1252 GATGCGCCTCTTGTCTCTGTTGACTTCAGGTGCTCTGATGTCTC-TACCACCATTGACTC 1310
|||| |||||||||||||||||||||||||||||||||||| || | | || ||||| ||
Sbjct 1021 GATGAGCCTCTTGTCTCTGTTGACTTCAGGTGCTCTGATGTATCCT-CAACTATTGATTC 1079
Query 1311 GTCCCTCACTATGGTTATGGGTGATGATATGGTCAAGGTGGTTGCTTGGTATGATAACGA 1370
|| ||||| ||||||||||| ||||||||||| || ||| ||||||||||||| || ||
Sbjct 1080 TTCTCTCACAATGGTTATGGGAGATGATATGGTTAAAGTGATTGCTTGGTATGACAATGA 1139
Query 1371 GTGGGGTTACA-GCCAAAGAGTGGTGGATTTGGCT 1404
||||||||| || | ||||| || |||||||||
Sbjct 1140 ATGGGGTTACTCGC-AGAGAGTCGTTGATTTGGCT 1173
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66581748260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5