BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G43170.1
Length=1496
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473757 jgi|Araly1|473757|fgenesh2_kg.1__3711__AT1G43170.1 2298 0.0
Ahg949026 jgi|Araly1|949026|scaffold_800913.1 876 0.0
> Ahg473757 jgi|Araly1|473757|fgenesh2_kg.1__3711__AT1G43170.1
Length=1447
Score = 2298 bits (1244), Expect = 0.0
Identities = 1385/1453 (95%), Gaps = 10/1453 (1%)
Strand=Plus/Plus
Query 1 AAACTAGGGTTTTAAAGCTCATTTCTCTCTTGCAGTCCTCATCGTTGGAGCTTAGAAGCC 60
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 AAACTAGGGTTTTAAAGATCATTTCTCTCTTGCAGTCC-CATCGTTGGAGCTTAGAAGCC 59
Query 61 GTCGGCACaagaagaagaagaagaagaaTGTCTCACAGGAAGTTTGAGCACCCAAGACAT 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GTCGGCACAAGTAGAAGAAGAAGAAGAATGTCTCACAGGAAGTTTGAGCACCCAAGACAT 119
Query 121 GGTTCTCTTGGTTTCCTTCCAAGGAAGAGAGCTAACCGTCACAGAGGAAAGGTGAAGGCG 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GGTTCTCTTGGTTTCCTTCCAAGGAAGAGAGCTAACCGTCACAGAGGAAAGGTGAAGGCT 179
Query 181 TTCCCTAAGGATGACCAAACCAAGCCTTGCAAGTTCACAGCTTTCATGGGTTACAAAGCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TTCCCTAAGGATGACCAAACCAAGCCTTGCAAGTTCACAGCTTTCATGGGTTACAAAGCT 239
Query 241 GGTATGACTCACATTGTCAGAGAAGTGGAGAAACCTGGATCCAAGCTTCACAAGAAGGAG 300
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 240 GGTATGACTCACATTGTCAGAGAAGTCGAGAAACCTGGATCTAAGCTTCACAAGAAGGAG 299
Query 301 ACATGTGAGGCTGTTACCATCATTGAGACACCTGCTATGGTGGTTGTTGGAGTTGTTGCC 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 300 ACATGTGAGGCTGTTACCATCATTGAGACACCTGCTATGGTTGTTGTTGGAGTTGTTGCC 359
Query 361 TATGTGAAGACTCCTAGAGGTTTGAGGTCTTTGAACACTGTCTGGGCACAGCATTTGAGT 420
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 360 TATGTGAAGACTCCGAGAGGTTTGAGGTCTTTGAACACTGTTTGGGCACAGCATTTGAGT 419
Query 421 GAGGAGGTCAGGAGAAGGTTCTACAAGAACTGGGCTAAGTCTAAGAAGAAGGCTTTCACT 480
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GAGGAGGTTAGGAGAAGGTTCTACAAGAACTGGGCTAAGTCTAAGAAGAAGGCTTTCACT 479
Query 481 GGGTACGCTAAGCAGTATGACAGTGAGGATGGCAAGAAGGGTATTCAGGCTCAGCTTGAG 540
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 480 GGGTACGCTAAGCAGTATGAAAGTGAGGAGGGCAAGAAGGGTATTCAGGCTCAGCTTGAG 539
Query 541 AAGATGAAGAAGTACGCTACTGTCATCCGTGTTTTGGCTCACACTCAGATCAGGAAGATG 600
||||||||||| ||||| ||||| |||||||||||||| |||||||||||||||||||||
Sbjct 540 AAGATGAAGAAATACGCAACTGTTATCCGTGTTTTGGCCCACACTCAGATCAGGAAGATG 599
Query 601 AAGGGATTGAAGCAGAAGAAGGCTCACATGATGGAGATCCAGATCAATGGTGGTACCATT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AAGGGATTGAAGCAGAAGAAGGCTCACATGATGGAGATCCAGATCAATGGTGGTACCATT 659
Query 661 GCCCAGAAGGTTGACTTTGCCTACAGTTTCTTTGAGAAGCAGATCCCAATTGAAGCTGTC 720
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 660 GCCCAGAAGGTCGACTTTGCCTACAGCTTCTTTGAGAAGCAGATCCCAATTGAAGCTGTC 719
Query 721 TTCCAGAAGGATGAAATGATTGATATCATTGGTGTGACCAAGGGTAAGGGTTATGAAGGT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 720 TTCCAGAAGGATGAAATGATTGATATCATTGGTGTGACCAAGGGTAAGGGTTACGAAGGT 779
Query 781 GTTGTTACTCGTTGGGGTGTTACCCGTCTTCCTCGTAAGACTCACAGAGGTCTGCGTAAG 840
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 780 GTTGTTACCCGTTGGGGTGTTACCCGTCTTCCTCGTAAGACTCACAGGGGTCTGCGTAAG 839
Query 841 GTTGCTTGTATTGGTGCGTGGCATCCTGCTAGAGTGTCCTACACTGTTGCTAGGGCTGGT 900
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 840 GTTGCTTGTATCGGTGCGTGGCATCCTGCTAGAGTGTCTTACACTGTTGCTAGGGCTGGT 899
Query 901 CAGAACGGTTACCATCACCGTACTGAGCTTAACAAGAAGATTTACAGGTTGGGTAAGGTT 960
||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 900 CAGAATGGTTACCATCACCGTACTGAGCTGAACAAGAAGATTTACAGGTTGGGCAAGGTT 959
Query 961 GGTACTGAGGCACACACAGCCATGACTGAATATGACAGGACTGAGAAGGATGTGACTCCA 1020
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GGTACTGAGGCACATTCAGCCATGACTGAATATGACAGGACTGAGAAGGATGTGACTCCA 1019
Query 1021 ATGGGAGGCTTCCCACACTACGGTATTGTGAAGGATGACTACTTGATGATTAAGGGGTGC 1080
|||||||| ||||||||||||||| | ||||||||||| |||||||||||||||||||||
Sbjct 1020 ATGGGAGGATTCCCACACTACGGTGTGGTGAAGGATGATTACTTGATGATTAAGGGGTGC 1079
Query 1081 TGTGTTGGTCCCAAGAAGAGAGTTGTAACTCTCAGACAGTCACTTCTCACTCAGACTTCC 1140
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1080 TGTGTTGGTCCCAAGAAGAGAGTTGTAACTCTCAGACAGTCACTACTCACCCAGACTTCC 1139
Query 1141 CGTCTTGCCTTGGAGGAGATCAAACTCAAGTTTATTGACACCGCCTCCATTTTTGGACAT 1200
|||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||
Sbjct 1140 CGTCTTGCCTTGGAGGAGATCAAACTCAAGTTCATTGACACCGCCTCCAATGGGGGACAT 1199
Query 1201 GGTCGCTTCCAGACCTCCCTTGAGAAGATGAGGTTTTACAACCGTGTCACGAAGTAAGAG 1260
||||||||||||||| |||| |||||||||||||||||| ||| || ||| ||||||
Sbjct 1200 GGTCGCTTCCAGACCACCCTGGAGAAGATGAGGTTTTACGGTCGTACCAAGAATTAAGAG 1259
Query 1261 TTGTTTTATCACAATTCTTCTTAGAAAGTTTCATGTTT-GGTTATCTGTTGCTACTTATC 1319
|||||||||| |||||||||||||||||||| |||||| |||||||||||||||||| ||
Sbjct 1260 TTGTTTTATCGCAATTCTTCTTAGAAAGTTTTATGTTTTGGTTATCTGTTGCTACTTGTC 1319
Query 1320 TCAGAGA--TGTTATCCTTTAAACAATGTTATGGAGttttcttttgcttttagtttgtta 1377
||||||| |||||||||| |||||||| |||| |||||||||||| |||||||||||||
Sbjct 1320 TCAGAGAGATGTTATCCTTAAAACAATGCTATGCAGTTTTCTTTTG-TTTTAGTTTGTTA 1378
Query 1378 cttttttGGAAGTTAAAACGATTTGCTTCTCAAGTTTTGAGACTTT-GATGTGTTCTTTA 1436
| |||||||||| ||| |||||||||||||||||||| |||||| |||||||| | |
Sbjct 1379 CATTTTTGGAAGACAAAT-GATTTGCTTCTCAAGTTTTGTGACTTTTGATGTGTT-T--A 1434
Query 1437 TCATTTATGAAAA 1449
|||||||||||||
Sbjct 1435 TCATTTATGAAAA 1447
> Ahg949026 jgi|Araly1|949026|scaffold_800913.1
Length=1168
Score = 876 bits (474), Expect = 0.0
Identities = 547/583 (94%), Gaps = 2/583 (0%)
Strand=Plus/Plus
Query 79 agaagaagaaTGTCTCACAGGAAGTTTGAGCACCCAAGACATGGTTCTCTTGGTTTCCTT 138
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 12 AGAAGAAGAATGTCTCACAGGAAGTTTGAGCATCCAAGACATGGTTCTCTTGGTTT-CTT 70
Query 139 -CCAAGGAAGAGAGCTAACCGTCACAGAGGAAAGGTGAAGGCGTTCCCTAAGGATGACCA 197
||||| ||||||||||| ||||||||||||||||||||||| || ||||||||||| ||
Sbjct 71 ACCAAGAAAGAGAGCTAATCGTCACAGAGGAAAGGTGAAGGCTTTTCCTAAGGATGATCA 130
Query 198 AACCAAGCCTTGCAAGTTCACAGCTTTCATGGGTTACAAAGCTGGTATGACTCACATTGT 257
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 131 AACTAAGCCTTGCAAGTTCACAGCTTTCATGGGTTACAAAGCTGGTATGACTCATATTGT 190
Query 258 CAGAGAAGTGGAGAAACCTGGATCCAAGCTTCACAAGAAGGAGACATGTGAGGCTGTTAC 317
|||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 191 CAGAGATGTCGAGAAACCCGGATCCAAGCTTCACAAGAAGGAGACATGTGAGGCTGTTAC 250
Query 318 CATCATTGAGACACCTGCTATGGTGGTTGTTGGAGTTGTTGCCTATGTGAAGACTCCTAG 377
|||||||||||||| |||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 251 TATCATTGAGACACCAGCTATGGTTGTTGTTGGAGTTGTTGCTTATGTGAAGACTCCGAG 310
Query 378 AGGTTTGAGGTCTTTGAACACTGTCTGGGCACAGCATTTGAGTGAGGAGGTCAGGAGAAG 437
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 311 AGGTTTGAGGTCTTTGAACACTGTTTGGGCACAGCATTTGAGTGAGGAGGTTAGGAGAAG 370
Query 438 GTTCTACAAGAACTGGGCTAAGTCTAAGAAGAAGGCTTTCACTGGGTACGCTAAGCAGTA 497
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 371 GTTCTACAAGAACTGGGCTAAGTCTAAGAAGAAGGCTTTTACCGGGTACGCTAAGCAGTA 430
Query 498 TGACAGTGAGGATGGCAAGAAGGGTATTCAGGCTCAGCTTGAGAAGATGAAGAAGTACGC 557
||| ||| | ||||||| ||||||||| |||||||||||||| ||||||||||| ||||
Sbjct 431 TGAAAGTAACGATGGCAGGAAGGGTATCCAGGCTCAGCTTGACAAGATGAAGAAATACGG 490
Query 558 TACTGTCATCCGTGTTTTGGCTCACACTCAGATCAGGAAGATGAAGGGATTGAAGCAGAA 617
||||| ||||||||| ||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 491 AACTGTTATCCGTGTTCTGGCTCACACTCAGATCAGGAAGATGAAGGGGTTGACGCAGAA 550
Query 618 GAAGGCTCACATGATGGAGATCCAGATCAATGGTGGTACCATT 660
||||||||||||||||||||||||||| |||||||||||||||
Sbjct 551 GAAGGCTCACATGATGGAGATCCAGATAAATGGTGGTACCATT 593
Score = 582 bits (315), Expect = 2e-165
Identities = 449/515 (87%), Gaps = 4/515 (1%)
Strand=Plus/Plus
Query 703 ATCCCAATTGAAGCTGTCTTCCAGAAGGATGAAATGATTGATATCATTGGTGTGACCAAG 762
||||| ||||| ||||| |||||||||||||||||||||||| | |||||||||||||||
Sbjct 594 ATCCCGATTGACGCTGTTTTCCAGAAGGATGAAATGATTGATGTGATTGGTGTGACCAAG 653
Query 763 GGTAAGGGTTATGAAGGTGTTGTTACTCGTTGGGGTGTTACCCGTCTTCCTCGTAAGACT 822
||||||||||| ||||| ||||| || ||||||||||| || | ||||| |||||||||
Sbjct 654 GGTAAGGGTTACGAAGGAGTTGTAACCCGTTGGGGTGTGACAAGGCTTCCCCGTAAGACT 713
Query 823 CACAGAGGTCTGCGTAAGGTTGCTTGTATTGGTGCGTGGCATCCTGCTAGAGTGTCCTAC 882
||||| ||||| ||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 714 CACAGGGGTCTACGTAAGGTTGCTTGTATCGGTGCGTGGCATCCAGCTAGAGTGTCCTAC 773
Query 883 ACTGTTGCTAGGGCTGGTCAGAACGGTTACCATCACCGTACTGAGCTTAACAAGAAGATT 942
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 774 ACTGTAGCTAGGGCTGGTCAGAACGGTTACCATCACCGTACTGAGCTAAACAAGAAGATT 833
Query 943 TACAGGTTGGGTAAGGTTGGTACTGAGGCACACACAGCCATGACTGAATATGACAGGACT 1002
||||||||||| || |||||||||||| | || ||||||||||||||||||||||||||
Sbjct 834 TACAGGTTGGGCAAAGTTGGTACTGAGACTCATTCAGCCATGACTGAATATGACAGGACT 893
Query 1003 GAGAAGGATGTGACTCCAATGGGAGGCTTCCCACACTACGGTATTGTGAAGGATGACTAC 1062
|||||||| | |||||||||||||| ||| |||| |||||||| |||||||||||||||
Sbjct 894 GAGAAGGAAATAACTCCAATGGGAGGATTCGCACATTACGGTATAGTGAAGGATGACTAC 953
Query 1063 TTGATGATTAAGGGGTGCTGTGTTGGTCCCAAGAAGAGAGTTGTAACTCT-CAGACAGTC 1121
|||||||||||||| || || | ||||| |||||||||||||| ||||| | | |||||
Sbjct 954 TTGATGATTAAGGGTTGTTGCATGGGTCCAAAGAAGAGAGTTGTGACTCTGC-GCCAGTC 1012
Query 1122 ACTTCTCACTCAGACTTCCCGTCTTGCCTTGGAGGAGATCAA-ACTCAAGTTTATTGACA 1180
|| || | |||||||| |||||||| |||||| ||| || | ||||||| |||| |
Sbjct 1013 GCTGCTTAGGCAGACTTCTCGTCTTGCGATGGAGGTGATTAATA-TCAAGTTCGTTGATA 1071
Query 1181 CCGCCTCCATTTTTGGACATGGTCGCTTCCAGACC 1215
| |||||| |||||||||| ||||||||||
Sbjct 1072 CTTCCTCCAAGCAAGGACATGGTCACTTCCAGACC 1106
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55992660150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5