BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G43640.1 Length=1594 Score E Sequences producing significant alignments: (Bits) Value Ahg473770 jgi|Araly1|473770|fgenesh2_kg.1__3724__AT1G43640.1 1327 0.0 Ahg922848 jgi|Araly1|922848|scaffold_104129.1 643 0.0 > Ahg473770 jgi|Araly1|473770|fgenesh2_kg.1__3724__AT1G43640.1 Length=1498 Score = 1327 bits (718), Expect = 0.0 Identities = 946/1050 (90%), Gaps = 39/1050 (4%) Strand=Plus/Plus Query 1 TGagaaaaaacagcaaagaaaatcagagagatcaaaaaaaagaaaaaaaaGAACAGAGAT 60 ||||||||||||||||||| ||||||||||| | | || ||||| || ||||||||| Sbjct 1 TGAGAAAAAACAGCAAAGATAATCAGAGAGAGC----AGAA-AAAAAGAA-AACAGAGAT 54 Query 61 TCTTTTGAACTAACGAAGACATATCGTTTCTCTAAAGTAGAATCTTTGGTATTCGGAAAA 120 |||||| |||||||||||||||| ||||| ||| ||| |||| ||||||||||||||||| Sbjct 55 TCTTTTAAACTAACGAAGACATAGCGTTTTTCTGAAGCAGAAGCTTTGGTATTCGGAAAA 114 Query 121 ATGTCGTTTCTG-AGTATTGTTCGTGATGTTAGAGATACTGTAGGAAGCTTTTCGAGACG 179 ||||||||| | ||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 115 ATGTCGTTT-GGTAGTATTGTTCGTGATGTTAGAGATAGTATAGGAAGCTTTTCGAGACG 173 Query 180 TAGTTTCGACGTGAGAGTATCTAATGGGACGACTCATCAGAGGAGTAAATCTCAC-G-G- 236 ||||||||| |||||||| |||||| || ||||||||||||||||||||||||| | | Sbjct 174 TAGTTTCGAAGTGAGAGTGTCTAAT-GG--GACTCATCAGAGGAGTAAATCTCACGGTGC 230 Query 237 ---TGTTGAGGCACATATTGAAGATCTTATTGTAATCAAGAACACTCGTTGGGCTAATTT 293 ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 231 ATCTGTTGAGACACATATTGAAGATCTTGTTGTAATCAAGAACACTCGTTGGGCTAATTT 290 Query 294 ACCGGCTGCGCTATTACGAGATGTGATGAAAAAGTTGGATGAAAGCGAGAGTACTTGGCC 353 |||||||||||| ||||||||||||||||||||||||||||| ||| |||| |||||||| Sbjct 291 ACCGGCTGCGCTGTTACGAGATGTGATGAAAAAGTTGGATGATAGCAAGAGCACTTGGCC 350 Query 354 TGCACGTAAACAAGTCGTTGCTTGTGCTGGTGTCTGCAAGACATGGAGACTAATGTGCAA 413 ||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 351 TGCTCGTAAACAAGTTGTTGCTTGTGCTGGTGTTTGCAAGACATGGAGACTAATGTGCAA 410 Query 414 AGATATTGTGAAAAGTCCTGAGTTCTCAGGCAAACTCACATTTCCAGTTTCGTTGAAACA 473 |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 411 AGATATTGTGAAAAGTCCTGAGTTCTCAGGAAAACTCACATTTCCAGTTTCATTGAAACA 470 Query 474 GCCCGGGCCTAGGGATGGAATCATACAATGTTATATCAAAAGAGACAAGTCTAACATGAC 533 ||||||||||||||| |||| ||||||||||| ||||||||| ||||||||||| ||||| Sbjct 471 GCCCGGGCCTAGGGACGGAACCATACAATGTTTTATCAAAAGGGACAAGTCTAATATGAC 530 Query 534 TTACCACCTTTACCTTTCTCTTAGTCCTGC-CATA-CTTGTTGAAAGTGGGAAGTTTCTT 591 |||||| |||||||||||||||||||||| | || | | ||| | || ||| | Sbjct 531 TTACCATCTTTACCTTTCTCTTAGTCCTGTAC-TAACCT-TTGTCA-----AA-TTTGTA 582 Query 592 CTCTCGGCAAAGCGCTCACGGAGAGCTACATACACAGAGTATGTAATATCAATGGATGCA 651 | | || || || | | ||||||||||||||||||| ||||||||||||||| Sbjct 583 C-------A--GC-CTTACTTA-A-CTACATACACAGAGTATGTGATATCAATGGATGCA 630 Query 652 GACAACATTTCAAGATCAAGCAGCACTTACATTGGCAAACTGAAGTCTAACTTTCTAGGG 711 |||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||| Sbjct 631 GACAACATATCAAGATCAAGCAGCACATACATTGGCAAACTGAGGTCTAACTTTCTAGGG 690 Query 712 ACAAAATTTATAGTATATGATACGGCTCCTGCGTACAACAGTAGCCAGATATTGTCCCCA 771 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 691 ACAAAATTTATAGTATATGATACGGCTCCTGCATACAACAGTAGCCAGATATTGTCCCCA 750 Query 772 CCAAACCGGAGTCGTAGTTTCAACTCCAAGAAAGTGTCTCCCAAAGTCCCTTCTGGAAGT 831 |||||||| |||||||| ||||||||| ||||||| |||||||| ||||| ||||||||| Sbjct 751 CCAAACCGAAGTCGTAGGTTCAACTCCGAGAAAGTCTCTCCCAAGGTCCCCTCTGGAAGT 810 Query 832 TACAACATTGCTCAAGTTACATACGAGCTGAACTTGCTTGGAACCCGTGGACCTCGTAGA 891 |||||||| |||||||||||||||||||| ||| || ||||||||||| ||||||| || Sbjct 811 TACAACATCGCTCAAGTTACATACGAGCTTAACGTGTTTGGAACCCGTAGACCTCGCAGG 870 Query 892 ATGAACTGCATTATGCACTCTATCCCCTCCTTAGCTCTAGAACCCGGAGGTACTGTCCCT 951 ||| |||||| ||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct 871 ATGCACTGCACTATGCACTCTATCCCTTCCTTAGCTCTAGAACCCGGCGGTACTGTCCCT 930 Query 952 AGCCAACCTGAGTTTCTACAACGTTCCCTTGATGAATCTTTCCGCAGCATCGGTTCCTCA 1011 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 931 GGCCAACCTGAGTTTCTACAACGTTCCCTTGATGAATCTTTCCGCAGCATCGGTTCCTCA 990 Query 1012 AAGATAGTCAACCACTCGGGAGATTTCACC 1041 ||||||||| |||||||||||||||||||| Sbjct 991 AAGATAGTCGACCACTCGGGAGATTTCACC 1020 Score = 422 bits (228), Expect = 5e-117 Identities = 346/400 (87%), Gaps = 20/400 (5%) Strand=Plus/Plus Query 1058 AAGGAAAGGTGCGACCTTTGGTACTGAAAACTAAACCGCCAAGGTGGCTCCAACCGTTGC 1117 ||||||||| ||||||||||||||||||| ||| ||||| ||||||| |||| ||||| Sbjct 1067 AAGGAAAGGAACGACCTTTGGTACTGAAAAATAAGCCGCCGAGGTGGCACCAAAAGTTGC 1126 Query 1118 GATGTTGGTGCCTTAACTTCAAAGGGAGAGTGACTGTAGCTTCTGTCAAGAACTTCCAGT 1177 ||| |||||||||||||||| |||||||||||| |||||||| || || |||||||||| Sbjct 1127 AATGCTGGTGCCTTAACTTCAGAGGGAGAGTGACAGTAGCTTCAGTAAAAAACTTCCAGT 1186 Query 1178 TGATGTCCGCTGCAACGGTTCAGCCCGGTAGTGGTAGTGATGGTGGAGCATTGGCTACGA 1237 || | ||||||||||||||||||||| | | || ||||||||| | || | Sbjct 1187 TGGTATCCGCTGCAACGGTTCAGCCC----------G-G-TGCTGGAGCATT-G--ACCA 1231 Query 1238 GGCCATCGTTATCACCACAGCAGCCAGAGCAATCAAACCATGATAAGATAATACTACACT 1297 ||||| ||||| ||||| |||||| |||| || |||||||| ||||||||||||| | Sbjct 1232 ---CATCGGTATCATCACAGAAGCCAGGGCAAACAGACCATGATGAGATAATACTACAGT 1288 Query 1298 TTGGGAAAGTGGGTAAGGATATGTTCACTATGGACTATCGTTATCCTCTCTCTGCCTTTC 1357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1289 TTGGGAAAGTGGGTAAGGATATGTTCACTATGGACTATCGTTATCCTCTCTCTGCCTTTC 1348 Query 1358 AAGCGTTTGCCATTTCCCTGAGCACCTTTGATACTAAATTGGCATGTGAATAAAAGTAGA 1417 |||| |||||||||| | |||||| ||||||||||||||||||||||||||||||||||| Sbjct 1349 AAGCATTTGCCATTTGCTTGAGCAGCTTTGATACTAAATTGGCATGTGAATAAAAGTAGA 1408 Query 1418 AAGATCATAAGAGGGACTTAAAACT-AATAGGAACCGTTT 1456 |||||||||||| ||| || ||| | |||||||||||||| Sbjct 1409 AAGATCATAAGATGGAGTTCAAA-TGAATAGGAACCGTTT 1447 > Ahg922848 jgi|Araly1|922848|scaffold_104129.1 Length=1134 Score = 643 bits (348), Expect = 0.0 Identities = 700/858 (82%), Gaps = 72/858 (8%) Strand=Plus/Plus Query 433 GAGTTCTCAGGCAAACTCACA--TTTCCAG-T--TTCGTTGA---AACAGCCCGGGCCTA 484 ||||||||||||||||||||| ||| | | | || |||| ||||| ||||||| Sbjct 296 GAGTTCTCAGGCAAACTCACACGTTT-CTGATAACTCTTTGATTGTGCAGCCTGGGCCTA 354 Query 485 GGGATGGAATCATACAATG-TTATATCAAAAGAGACAAGTCTAACATGACTTACCACCTT 543 |||| |||| ||||||||| || |||||||| ||||||||||| ||||||||||||||| Sbjct 355 GGGACGGAACCATACAATGCTT-CATCAAAAGGGACAAGTCTAATATGACTTACCACCTT 413 Query 544 TACCTTTCTCTTAGTCCTGCCATACTTGTTGAAAGTGGGAAGTTTCTTCTCTCGGCAAAG 603 |||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||| Sbjct 414 TACCTTTCTCTTAGTCCTTCCTTACTTGTTGAAAGTGGAAAGTTTCTTCTCTCGGCAAAG 473 Query 604 CGCTCACGGAGAGCTACATACACAGAGTATGTAATATCAATGGATGCAGACAACATTTCA 663 ||| | || ||||||||||||| |||||| || ||||| |||||||| || |||||||| Sbjct 474 CGCACCCGAAGAGCTACATACATAGAGTACGTGATATCGATGGATGCTGATAACATTTCG 533 Query 664 -AGATCAAGCAGCACTTACATTGGCAAACTGAAGTCTAACTTTCTAGGGACAAAATTTAT 722 || |||||||||| ||||||||||||| ||| ||||||||||||||||||||||||| | Sbjct 534 CAG-TCAAGCAGCAGTTACATTGGCAAAATGAGGTCTAACTTTCTAGGGACAAAATTTGT 592 Query 723 AGTATATGATACGGCTCCTGCGTACAACAGTAGCCAGATATTGTCCCCACCAAACCGGAG 782 | |||| ||||| || |||||| ||||| || |||| ||| ||||| |||||| |||||| Sbjct 593 AATATACGATACAGCGCCTGCGCACAACGGTTGCCAAATAATGTCCTCACCAAGCCGGAG 652 Query 783 TCGTAGTTTCAACTCCAAGAAAGTGTCTCCCAAAGTCCCTTCTGGAAGTTACAACATTGC 842 |||||| |||| |||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 653 TCGTAGGTTCAGCTCCAAGAAAGTCTCTCCCAAAGTCCCCTCTGGAAGTTACAACATTGC 712 Query 843 TCAAGTTACATACGAGCTGAACTTGCTTGGAACCCGTGGACCTCGTA-GAATGAACTGCA 901 ||||||||||| || ||||||||||||||||||||||||||||| | || || |||||| Sbjct 713 CCAAGTTACATATGAACTGAACTTGCTTGGAACCCGTGGACCTCGCAAGA-TGCACTGCA 771 Query 902 TTATGCACTCTATCCCCTCCTTAGCTCTAGAACCCGGAGGTACTGTCCCTAGCCAACCTG 961 ||||||| ||||| || | ||| ||| | | || | ||||||||| Sbjct 772 TTATGCATTCTAT----TCGT--GCTTTAG--CTC-----TA--G------GCCAACCTG 810 Query 962 AGTTTCTACAACGTTCCCTTGATGAATCTTTCCGCAGCATCGGTTCCTCAAAGATAGTCA 1021 || |||| |||| ||| |||||||||||||| ||||||||||||||||||||||| || Sbjct 811 AGCTTCTTCAACACTCCTTTGATGAATCTTTCGGCAGCATCGGTTCCTCAAAGATAATCG 870 Query 1022 ACCACTCGGGAGATTT---CA-C-CC-GA--C-C-GA-A-------A--G-A-G-G-AAG 1057 |||||||||| ||||| || | || | | | || | | | | | | ||| Sbjct 871 ACCACTCGGGGGATTTTAGCAGCGCCCGGTTCTCTGACATTGTTGGATCGCAAGAGGAAG 930 Query 1058 AAGGAAAGGTGCGACCTTTGGTACTGAAAA-CTAAACCGCCAAGGTGGC-TCCAACCGTT 1115 ||||||||| ||| ||||||| || |||| | |||||||| ||||||| | || | | Sbjct 931 AAGGAAAGGAACGAACTTTGGTGCTTAAAAAC-AAACCGCCGAGGTGGCATGGAAA-GCT 988 Query 1116 GCGATGTTGGTGCCTTAACTTCAAAGGGAGAGTGACTGTAGCTTCTGTCAAGAACTTCCA 1175 ||| || ||||||||| |||||| |||||||||||| || ||||| |||||||||||||| Sbjct 989 GCGGTGCTGGTGCCTTCACTTCAGAGGGAGAGTGACAGTTGCTTCCGTCAAGAACTTCCA 1048 Query 1176 GTTGATGTCCGCTGCAACGGTTCAGCCCGGT--AG-T-GG----TAGTGATGGTGGAGCA 1227 ||||||||||||||||||||||| || ||| || | || ||||| || ||||||| Sbjct 1049 ATTGATGTCCGCTGCAACGGTTCAACCTGGTCCAGATAGGCAGATAGTGGTGCTGGAGCA 1108 Query 1228 TTGGCTACGAGGCCATCG 1245 ||| | |||||||||||| Sbjct 1109 TTGACCACGAGGCCATCG 1126 Score = 292 bits (158), Expect = 4e-78 Identities = 258/304 (85%), Gaps = 15/304 (5%) Strand=Plus/Plus Query 104 CTTTGGTATTCGGAAAAATGTCGTTTCTG-AGTATTGTTCGTGATGTTAGAGATACTGTA 162 |||||||||| ||| ||||| |||||| | || |||||||||||||||||||||| | || Sbjct 4 CTTTGGTATTGGGATAAATGACGTTTC-GTAGCATTGTTCGTGATGTTAGAGATAGTATA 62 Query 163 GGAAGCTTTTCGAGACGTAGTTTCGACGTGAGAGTATCTAATGGGACGACT-CATCAGAG 221 ||||||||||||||||||||| |||| |||||||| ||||||| ||| | | ||| | Sbjct 63 GGAAGCTTTTCGAGACGTAGTGTCGAAGTGAGAGTGTCTAATGAGACTAGTAAATCTCAC 122 Query 222 GAGTAAATCTCACGGTGTTGAGGCACAT-AT--TGAAGATCTTATTGTAATCAAGAACAC 278 | || || | | |||||| ||||| || ||||||||| |||||||||||||||| Sbjct 123 G-GTGCAT-T----G-GTTGAGACACATGATCAAGAAGATCTTGTTGTAATCAAGAACAC 175 Query 279 TCGTTGGGCTAATTTACCGGCTGCGCTATTACGAGATGTGATGAAAAAGTTGGATGAAAG 338 ||||||||||||||| || |||| | | |||| |||||||||||||||||||||||||| Sbjct 176 TCGTTGGGCTAATTTGCCAGCTGAGGTGCTACGTGATGTGATGAAAAAGTTGGATGAAAG 235 Query 339 CGAGAGTACTTGGCCTGCA-CGTAAACAAGTCGTTGCTTGTGCTGGTGTCTGCAAGACAT 397 |||||| || ||||||| | ||||||||||| |||||||||||||||||||||||||||| Sbjct 236 CGAGAGCACGTGGCCTG-ATCGTAAACAAGTTGTTGCTTGTGCTGGTGTCTGCAAGACAT 294 Query 398 GGAG 401 |||| Sbjct 295 GGAG 298 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59725504160 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5