BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G43670.1
Length=1319
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922860 jgi|Araly1|922860|scaffold_104141.1 1764 0.0
> Ahg922860 jgi|Araly1|922860|scaffold_104141.1
Length=1066
Score = 1764 bits (955), Expect = 0.0
Identities = 1017/1048 (97%), Gaps = 0/1048 (0%)
Strand=Plus/Plus
Query 137 AAAGATGGATCACGCAGCAGATGCTCACCGTACGGATTTGATGACCATTACAAGATTCGT 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 17 AAAGATGGATCACGCAGCAGATGCTCACCGTACGGATTTGATGACCATTACAAGATTCGT 76
Query 197 GTTGAATGAACAATCAAAGTATCCAGAATCTCGTGGTGATTTCACCATTTTGCTTAGTCA 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 77 GTTGAATGAACAATCAAAGTATCCAGAATCTCGTGGTGATTTCACCATTTTGCTTAGTCA 136
Query 257 CATCGTTTTGGGTTGCAAATTCGTTTGCAGTGCTGTTAATAAGGCTGGTTTGGCTAAGTT 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 137 CATCGTTTTGGGTTGCAAATTCGTTTGCAGTGCTGTTAATAAGGCTGGTTTGGCTAAGTT 196
Query 317 AATTGGACTTGCAGGGGAAACAAACATTCAGGGTGAAGAGCAAAAGAAACTTGATGTGCT 376
|||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 197 AATTGGTCTTGCAGGAGAAACAAACATTCAGGGTGAAGAGCAGAAGAAACTTGATGTGCT 256
Query 377 CTCTAATGATGTCTTTGTCAACGCTTTGGTTAGCAGTGGTAGAACTTCTGTTCTTGTCTC 436
|||||||||||| |||||||| ||| ||||||||||||| ||||||||||||||||||||
Sbjct 257 CTCTAATGATGTTTTTGTCAAAGCTCTGGTTAGCAGTGGAAGAACTTCTGTTCTTGTCTC 316
Query 437 GGAGGAAGATGAGGAAGCTACGTTTGTGGAGCCATCCAAGCGTGGAAAGTACTGTGTTGT 496
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 317 GGAGGAAGATGAGGAAGCTACGTTTGTTGAGCCATCCAAGCGTGGAAAGTACTGTGTTGT 376
Query 497 TTTTGATCCGCTTGATGGATCTTCAAACATTGACTGTGGTGTTTCCATTGGCACAATTTT 556
||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 377 TTTCGATCCGCTTGATGGATCTTCGAACATTGACTGTGGTGTTTCCATTGGAACAATTTT 436
Query 557 TGGAATTTACACGTTGGACCACACTGATGAGCCAACCACTGCAGATGTTCTGAAACCTGG 616
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 437 TGGAATTTACACGTTGGACCACACTGATGAGCCAACCACTGAAGATGTTCTGAAACCTGG 496
Query 617 GAATGAAATGGTGGCTGCAGGTTATTGTATGTACGGAAGCTCCTGCATGCTTGTGTTGAG 676
||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 497 GAATGAAATGGTGGCGGCGGGTTATTGTATGTATGGAAGCTCCTGCATGCTTGTGTTGAG 556
Query 677 CACTGGAACCGGTGTCCACGGATTTACACTGGACCCATCTCTAGGAGAGTTCATTCTAAC 736
||||||||| ||||||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct 557 CACTGGAACGGGTGTCCACGGGTTTACCCTCGACCCATCTCTAGGAGAGTTCATTCTAAC 616
Query 737 TCACCCGGACATTAAGATTCCAAATAAGGGAAACATTTATTCGGTGAATGAAGGCAATGC 796
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 617 TCACCCGGACATTAAGATTCCAAATAAGGGAAACATTTATTCAGTGAATGAAGGCAATGC 676
Query 797 GCAGAACTGGGATGGTCCAACTACAAAGTATGTAGAGAAATGCAAGTTTCCTAAAGATGG 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 677 GCAGAACTGGGATGGTCCAACTACAAAGTATGTAGAGAAATGCAAGTTTCCTAAAGATGG 736
Query 857 TTCTCCTGCAAAGTCTCTGAGATACGTAGGAAGTATGGTAGCTGATGTTCATCGTACACT 916
||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct 737 TTCTCCTGCAAAGTCTCTGAGATACGTTGGAAGTATGGTAGCCGATGTTCATCGCACACT 796
Query 917 ACTTTATGGAGGAATCTTCTTGTACCCGGCTGACAAGAAAAGCCCCAATGGAAAATTGCG 976
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 797 ACTTTATGGAGGAATCTTCTTGTACCCGGCTGACAAGAAAAGCCCCAATGGGAAACTGCG 856
Query 977 TGTCTTGTATGAAGTTTTCCCGATGTCGTTTTTGATGGAGCAAGCCGGAGGTCAGGCCTT 1036
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 857 TGTCTTGTATGAAGTTTTCCCGATGTCGTTCTTGATGGAGCAAGCCGGAGGTCAGGCCTT 916
Query 1037 TACGGGAAAGAAAAGGGCGCTAGACCTTGTCCCGGAGAAGATCCATGAGCGTTCTCCGAT 1096
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 917 TACGGGAAAGAAAAGGGCGCTAGACCTTGTCCCGGAGAAGATCCATGAGCGTTCTCCGAT 976
Query 1097 ATTTCTTGGTAGCTACGATGATGTAGAAGAGATTAAAGCTCTCTATGCTGAGGAGGAAAA 1156
|||||||||||||||||| |||||||| |||||||| ||||| |||||||||||| ||||
Sbjct 977 ATTTCTTGGTAGCTACGACGATGTAGAGGAGATTAAGGCTCTGTATGCTGAGGAGTAAAA 1036
Query 1157 GAAGAACTAAGcttctcattcttctttt 1184
||||||||||||||||||||||||||||
Sbjct 1037 GAAGAACTAAGCTTCTCATTCTTCTTTT 1064
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49331054598
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5