BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G44100.1
Length=2151
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473798 jgi|Araly1|473798|fgenesh2_kg.1__3752__AT1G44100.1 2455 0.0
> Ahg473798 jgi|Araly1|473798|fgenesh2_kg.1__3752__AT1G44100.1
Length=1991
Score = 2455 bits (1329), Expect = 0.0
Identities = 1575/1693 (93%), Gaps = 20/1693 (1%)
Strand=Plus/Plus
Query 324 CTTCTTCTGGTCTTaaaaaaaTTCAAGATCTATACGAGAA-AACACAAAACAAGT-AAAA 381
|||||||||||| ||||||||||||||||||| ||||||| || | ||||||||| ||||
Sbjct 263 CTTCTTCTGGTC-TAAAAAAATTCAAGATCTAAACGAGAAGAA-AAAAAACAAGTAAAAA 320
Query 382 CTTTTTCAACCGTTTTTCCTGTCGGTAAAGTTTGGATTCTTCTTAGTAAATTTTGGTCTT 441
|||||||||||||||||||||||||||| ||||||||| || || |||||||||||||||
Sbjct 321 CTTTTTCAACCGTTTTTCCTGTCGGTAACGTTTGGATTTTTATT-GTAAATTTTGGTCTT 379
Query 442 ATTGTCGACCAA-AAGAAGAAGATGGTCGTTCAGAATGTTCAAGATTTGGATGTTCTTCC 500
||||| | || |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 380 -TTGTC-AAGAAGAAGAAGAAGATGGTCGTTAAGAATGTTCAAGATTTGGATGTTCTTCC 437
Query 501 GA-AACATAGCTCGGATTCATTCGATGATGATGGTCGTCCCAAGCGAACCGGGACGGTGT 559
|| | ||||||| |||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 438 GAGGA-ATAGCTCCGATTTATTCGATGACGATGGTCGTCCCAAGCGAACCGGGACGGTGT 496
Query 560 GGACAGCAAGTGCACACATAATAACAGCAGTAATTGGGTCAGGAGTGTTGTCATTGGCAT 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 497 GGACAGCAAGTGCACACATAATAACAGCAGTAATTGGGTCAGGAGTGTTGTCATTGGCAT 556
Query 620 GGGCCGTTGCTCAGATTGGTTGGATTGGTGGTCCAGTGGCTATGTTACTCTTTTCTTTCG 679
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 557 GGGCCGTTGCTCAGATTGGTTGGATTGGTGGTCCAGTGACTATGTTACTCTTTTCTTTCG 616
Query 680 TTACTTTTTACACATCTACCCTTCTCTGTTCTTGTTACCGATCTGGTGACTCTGTTACCG 739
|||||| ||||||||||||||| ||||||||||||||||| || |||||||||||| |||
Sbjct 617 TTACTTATTACACATCTACCCTCCTCTGTTCTTGTTACCGTTCCGGTGACTCTGTTTCCG 676
Query 740 GCAAAAGAAACTACACTTACATGGACGCTATTCACTCCAACCTCGGTGGGATTAAGGTGA 799
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 677 GCAAAAGAAACTACACTTACATGGACGCTATTCACGCCAACCTCGGTGGCATTAAGGTGA 736
Query 800 AAGTATGTGGAGTTGTGCAATATGTTAATCTATTTGGTACAGCAATTGGATATACAATTG 859
|| |||||||||||||||||||| ||||||| |||||||| ||||||||||| || ||||
Sbjct 737 AATTATGTGGAGTTGTGCAATATCTTAATCTCTTTGGTACTGCAATTGGATACACTATTG 796
Query 860 CATCAGCTATAAGTTTGGTAGCAATCCAAAGGACAAGTTGCCAACAGATGAATGGACCAA 919
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 797 CATCAGCTATAAGTTTGGTAGCAATCCAAAGGACAAGTTGCCAACAGATGAATGGAGGAA 856
Query 920 ATGATCCTTGTCATGTTAATGGAAATGTTTACATGATTGCGTTTGGTATTGTACAAATCA 979
|| ||||||||||||| ||||||||||||||||||||||| || ||| ||||||||||||
Sbjct 857 ATCATCCTTGTCATGTGAATGGAAATGTTTACATGATTGCATTCGGTGTTGTACAAATCA 916
Query 980 TATTCTCTCAGATTCCTGATTTTGATCAGTTATGGTGGCTTTCCATTGTCGCTGCGGTCA 1039
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 917 TATTCTCTCAGATTCCGGATTTTGATCAGTTATGGTGGCTTTCCATTGTCGCTGCGGTCA 976
Query 1040 TGTCTTTTGCTTATTCTG-CCATTGGACTTGGCCTTGGTGTCTCTAAAGTGGTAGAGAAC 1098
||||||||| |||||| | |||| || |||||||| |||||||||| |||||||||||||
Sbjct 977 TGTCTTTTGGTTATTC-GACCATCGGGCTTGGCCTGGGTGTCTCTAGAGTGGTAGAGAAC 1035
Query 1099 AAAGAAATTAAAGGTAGTCTCACTGGAGTCACTGTTGGGACAGTGACACTGAGTGGGACA 1158
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1036 AAAGAAATTAAAGGTACTCTCACTGGAGTCACTGTTGGGACAGTGACACCGAGTGGGACA 1095
Query 1159 GTGACATCGTCGCAGAAAATATGGAGAACATTTCAGTCTCTTGGCAACATTGCGTTTGCG 1218
|||||| || |||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1096 GTGACACCGACGCAGAAAATTTGGAGAACATTTCAGTCTCTTGGAAACATTGCGTTTGCT 1155
Query 1219 TACTCTTACTCGATGATTCTCATCGAAATTCAGGACACGGTGAAATCACCGCCTGCCGAA 1278
||||||||||||||||||||||| |||||||||||||| || ||||||||||| || |||
Sbjct 1156 TACTCTTACTCGATGATTCTCATTGAAATTCAGGACACCGTAAAATCACCGCCAGCAGAA 1215
Query 1279 GTAAACACGATGAGAAAAGCGACTTTTGTAAGTGTGGCAGTGACTACAGTCTTCTACATG 1338
|||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 1216 GTAAACACTATGAGAAAAGCGACTTTTGTAAGTGTGGCAGTGACAACAATCTTCTACATG 1275
Query 1339 CTATGTGGCTGTGTAGGGTATGCAGCATTTGGGGATAACGCACCCGGAAATCTCCTCGCT 1398
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1276 CTCTGTGGCTGTGTAGGGTATGCAGCATTTGGGGATACCGCACCCGGAAATCTCCTCGCT 1335
Query 1399 CATGGAGGGTTTAGAAACCCATATTGGTTGCTTGACATTGCTAATCTCGCTATAGTGATC 1458
|||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 1336 AATGGAGGGTTCAGAAACCCATTTTGGTTGCTTGACATTGCCAATCTCGCTATAGTGATC 1395
Query 1459 CATCTAGTCGGTGCTTACCAAGTCTATTGCCAACCCCTCTTTGCCTTCGTCGAGAAGGAA 1518
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1396 CATCTAGTCGGAGCTTACCAAGTCTATTGCCAACCCCTCTTTGCCTTTGTCGAGAAGGAA 1455
Query 1519 GCCTCTAGGAGGTTTCCAGAGAGCGAATTCGTCACAAAAGAGATCAAGATCCAACTCTTC 1578
||| |||||||||||||||||||| |||| |||||||| ||||||||||||||||||||
Sbjct 1456 GCCGCTAGGAGGTTTCCAGAGAGCAAATTTGTCACAAATGAGATCAAGATCCAACTCTTT 1515
Query 1579 CCGGGGAAGCCCTTTAACTTGAATCTCTTCAGGCTCGTATGGAGGACGTTCTTCGTGATG 1638
|||||||| ||||| |||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1516 CCGGGGAAACCCTTCAACTTGAACCTCTTCAGGCTCGTATGGAGGACAATCTTCGTGATG 1575
Query 1639 ACAACAACGTTGATCTCAATGTTAATGCCTTTCTTTAACGATGTAGTCGGTCTCTTGGGG 1698
|||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||
Sbjct 1576 ACAACAACGTTGATCTCAATGTTAATGCCTTTCTTTAACGATGTTCTTGGTCTTTTGGGG 1635
Query 1699 GCCATTGGTTTTTGGCCTTTAACGGTTTATTTCCCAGTGGAAATGTACATTGCACAGAAG 1758
||||| ||||||||||||||||||||||| ||||| |||||||||||||||| |||||||
Sbjct 1636 GCCATCGGTTTTTGGCCTTTAACGGTTTACTTCCCGGTGGAAATGTACATTGTACAGAAG 1695
Query 1759 AATGTTCCGAGATGGGGCACAAAGTGGGTTTGTCTACAAGTCTTGAGTGTGACATGTCTT 1818
|||||||||||||||||||||||||||||||||||||||||||| ||| || | ||||||
Sbjct 1696 AATGTTCCGAGATGGGGCACAAAGTGGGTTTGTCTACAAGTCTTAAGTCTGGCCTGTCTT 1755
Query 1819 TTTGTGTCCGTAGCCGCGGCCGCGGGATCTGTTA-TTGGCATTGTTAGTGATCTCAAGGT 1877
||||| |||||||||||||| || |||||||| | ||||||||||||||||||||||| |
Sbjct 1756 TTTGTATCCGTAGCCGCGGCTGCAGGATCTGT-AGTTGGCATTGTTAGTGATCTCAAGAT 1814
Query 1878 CTACAAACCTTTCCAGTCTGAATTCTGAGATCATACGGGAAAAATAAACTCCTGCTAAAA 1937
|||||||||||||||||| || |||| ||||||||||| |||| ||||||||| | ||||
Sbjct 1815 CTACAAACCTTTCCAGTCAGATTTCTAAGATCATACGG-AAAATTAAACTCCTACAAAAA 1873
Query 1938 GGGTTAAGATTAGAATTGAATGTTTTAATGTCATATTTGTATTAGT----T-AACTTTGT 1992
|| |||||||||||||||||||||||||||| || ||||||||||| | ||||||||
Sbjct 1874 GGCTTAAGATTAGAATTGAATGTTTTAATGTTATCTTTGTATTAGTGAAATTAACTTTGT 1933
Query 1993 GTAAGTGTTCAAT 2005
||||||| |||||
Sbjct 1934 GTAAGTGCTCAAT 1946
Score = 331 bits (179), Expect = 1e-89
Identities = 231/255 (91%), Gaps = 7/255 (3%)
Strand=Plus/Plus
Query 19 TAAACTATTTTTGTAGTCCTCACaaaaaaaaaaaaaaaaGCACATGCGGTTTCCTCTGCT 78
||||||||| || |||||||||||||||||||| || |||||||||||||||||| ||||
Sbjct 1 TAAACTATTCTTCTAGTCCTCACAAAAAAAAAAGAAGAAGCACATGCGGTTTCCTTTGCT 60
Query 79 TCTTCCTTCTTACAAGTTGGATGTCTCCGTCTTCCACGGTGCTTATAAATTAGTGAAACA 138
|||||| || |||||||||||||||||||||| |||||| |||||||||||||||||| |
Sbjct 61 TCTTCC-TCCTACAAGTTGGATGTCTCCGTCTCCCACGGAGCTTATAAATTAGTGAAATA 119
Query 139 ACAAAAGCTTTGGTCAGTATTTAT-ATTATCATGCATTTCTAATCTCTACTT-TGTCAAT 196
||||| ||||||||| || ||||| || |||||||||||||||||||| ||| | |||||
Sbjct 120 ACAAA-GCTTTGGTCTGT-TTTATTATCATCATGCATTTCTAATCTCTTCTTCT-TCAAT 176
Query 197 TCCTATACTTTCACTCTCTTCCAATTATATAATCTCTGGTCCATAGAAAACATCGGTCTC 256
| |||| ||| | |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 177 TTCTATGCTT-CTCTCTCTTCCAATTACATAATCTCTGGTCCATAGAAAACATCGGTCTC 235
Query 257 TTGTCACCGTTGATT 271
|||| ||||||||||
Sbjct 236 TTGTGACCGTTGATT 250
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80941770625
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5