BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G44350.1 Length=2019 Score E Sequences producing significant alignments: (Bits) Value Ahg922904 jgi|Araly1|922904|scaffold_104185.1 2359 0.0 > Ahg922904 jgi|Araly1|922904|scaffold_104185.1 Length=1437 Score = 2359 bits (1277), Expect = 0.0 Identities = 1384/1437 (96%), Gaps = 2/1437 (0%) Strand=Plus/Plus Query 66 ACAGACAAGAACAC--AAAGTTATGGACAATCTCCGGAAACTTAAtcttctctctgtctc 123 ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ACAAACAAGAACACAAAAAGTTATGGACAATCTCCGGAAACTTAATCTTCTCTCTGTCTC 60 Query 124 tctaaccataatctttgtctctctTACCATAGCCACCAACTTACCTTTCTTTGAAGTGAA 183 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 61 TCTAACCATAATCTTTGTCTCTCTTACAATAGCCACCAACTTACCTTTCTTTGAAGTGAA 120 Query 184 ATATCCCAACAACAACCCTTTTGGGATGTTACTACGGCCGACACCGATCAAGAACCAATC 243 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 121 ATATCCCAACAACAACCCTTTTGGGATGTTACTACGGCCGACACCGATCAAGAACCAGTC 180 Query 244 CTTGGGTCTACCGGCTCATGTCGGGTCAGATGAGTGTCGGGTTTGGACCAAAGCATGTTC 303 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CTTGGGTCTACCGGCTCAGGTCGGGTCAGATGAGTGTCGGGTTTGGACCAAAGCATGTTC 240 Query 304 TGATGAGATTCTTAGGCTGACTTATCAGCCGGATAACGTTGCGTGGCTTAAACGCGTTAG 363 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 241 CGATGAGATTCTTAGGCTGACTTATCAGCCGGATAACGTGGCGTGGCTTAAACGCGTTAG 300 Query 364 GAGGACGATCCATGAGAACCCGGAGCTAGCGTTTGAGGAGTATGAGACTAGTAGGCTTAT 423 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct 301 GAGGACGATCCATGAGAACCCGGAGCTAGCGTTTGAGGAGTATGAGACGAGTAGGCTTGT 360 Query 424 TAGGTCGGAGCTGGACCGTATGGGTATCATGTATAGATATCCGTTAGCGAAAACGGGTAT 483 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TAGGTCGGAGCTAGACCGTATGGGTATCATGTATAGATATCCGTTAGCGAAAACGGGTAT 420 Query 484 TCGGGCTTGGATCGGATCCGGTGGACCGCCTTTTGTTGCGGTTCGGGCTGATATGGACGC 543 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 TCGGGCTTGGATCGGATCCGGTGGACCGCCTTTTGTTGCGGTTCGGGCTGATATGGACGC 480 Query 544 ACTACCTATTCAGGAAGCAGTTGAATGGGAACATATAAGCAAAGTTGCAGGCAAAATGCA 603 ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| Sbjct 481 ACTACCTATTCAGGAAGCAGTTGAATGGGAACACAAAAGCAAAGTTGCAGGCAAAATGCA 540 Query 604 TGCATGTGGTCATGACGCACATGTGACTATGCTTCTTGGTGCTGCCCATATTCTTAAGGC 663 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 541 TGCATGTGGTCATGACGCACATGTGACTATGCTTCTTGGTGCTGCCCATATTCTTAAGTC 600 Query 664 TCGTGAACATCTTCTCAAGGGAACAGTGGTTCTGTTATTCCAACCGGCTGAAGAAGCTGG 723 ||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||| Sbjct 601 TCGTGAACATCTTCTCAAGGGAACAGTGGTTCTCTTATTCCAGCCGGCCGAAGAAGCTGG 660 Query 724 AAATGGTGCAAAGAATATGATCGAAGACGGAGCTTTGGATGACGTGGAGGCTATCTTCGC 783 ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 661 AAATGGTGCGAAGAATATGATTGAAGACGGAGCTTTGGATGACGTGGAGGCTATCTTCGC 720 Query 784 GGTCCATGTGTCCCATATCCATCCAACGGGTGTGATTGGATCAAGAAGTGGTCCTTTGCT 843 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 GGTCCATGTGTCCCATATCCATCCAACGGGTGTGATTGGATCAAGAAGTGGTCCTTTGCT 780 Query 844 CGCGGGATGTGGAATTTTCCGGGCGGTTATCACTTCGGAAGATAGCCGTGGCGCCGCTAA 903 ||| |||||||||||||||||||| ||||||||| | |||||||| ||||||| ||||| Sbjct 781 CGCCGGATGTGGAATTTTCCGGGCCGTTATCACTGCCGAAGATAGTGGTGGCGCTGCTAA 840 Query 904 TCTCCTTCTTGCAGCTTCTTCCGCGGTCATTAGTCTTCAAGGCATTGTATCCCGTGAAGC 963 ||| |||||||||||||||||||| |||||||| |||||||| ||||||||||||||||| Sbjct 841 TCTTCTTCTTGCAGCTTCTTCCGCTGTCATTAGCCTTCAAGGAATTGTATCCCGTGAAGC 900 Query 964 TAGTCCTCTTGACTCTCAGGTTGTGTCGGTTACTTCATTTGATGGCGGTCATAGTCTCGA 1023 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 901 TAGTCCTCTTGACTCTCAGGTTGTATCGGTTACTTCATTTGATGGCGGTCATAGTCTCGA 960 Query 1024 TGTGGCGCCGGACACGGTGGTCCTCGGTGGTACTTTCAGAGCTTTTTCTAACTCAAGCTT 1083 |||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 961 TGTGGCGCCGGAAACGGTGGTCCTCGGTGGTACATTCAGAGCTTTTTCTAATTCAAGCTT 1020 Query 1084 CTACTACCTCAAGAAACGTATTCAAGAGGTACTCATGGATCAGGTCGGGGTTTTCGGTTG 1143 ||| ||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 1021 CTATTACCTCAAGAAGCGTATTCAAGAGGTACTCATGGATCAGGTAGGGGTTTTTGGTTG 1080 Query 1144 CCAAGCGACAGTGAACTTCTTTGAGAAGCAGAATGCGATATACCCGCCAACTACGAACAA 1203 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1081 CCAAGCGACAGTGAACTTCTTTGAGAAGCAGAATGCGATCTACCCGCCAACTACGAACAA 1140 Query 1204 TGATGCAACATACAATCACTTGAAGAAAGTCACCATAGATTTGCTCGGAGATAGCCATTT 1263 ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| || Sbjct 1141 CGATGCAACATACAATCACTTGAAGAAAGTCACCGTAGATTTACTCGGAGATAGCCACTT 1200 Query 1264 CACCTTGGCTCCACAGATGATGGGAGCCGAAGATTTCGCCTTCTACTCAGAAATCATCCC 1323 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1201 CACCTTGGCTCCACAGATGATGGGAGCCGAAGATTTCGCCTTCTACTCAGAGATCATCCC 1260 Query 1324 AGCCGCTTTCTACTTCATTGGCATAAGAAATGAAGAACTCGGATCAGTCCACATTGCTCA 1383 ||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||| Sbjct 1261 GGCCGCATTCTACTTCATTGGCATAAGAAATGAAGAACTTGGATCAGTCCACATTGGTCA 1320 Query 1384 TTCACCACATTTCATGATCGATGAAGATAGTTTACCCGTTGGAGCCGCGGTTCATGCCGC 1443 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1321 TTCACCACATTTCATGATCGATGAAGATAGTTTACCCGTTGGAGCCGCCGTTCATGCCGC 1380 Query 1444 CGTGGCTGAGAGATACTTAAATGATAAACATTCATAAGAGTAAAAACAATCTCCCCG 1500 ||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||| Sbjct 1381 CGTGGCTGAGAGATACTTAAATGATAAACATTCATAAGAACAAAGACAATCTTCCCG 1437 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 75913858285 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5