BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G44446.1 Length=1988 Score E Sequences producing significant alignments: (Bits) Value Ahg473812 jgi|Araly1|473812|fgenesh2_kg.1__3766__AT1G44446.1 3092 0.0 > Ahg473812 jgi|Araly1|473812|fgenesh2_kg.1__3766__AT1G44446.1 Length=1985 Score = 3092 bits (1674), Expect = 0.0 Identities = 1888/1992 (95%), Gaps = 12/1992 (1%) Strand=Plus/Plus Query 2 AAAAGATAAAATCTCAAACTTTCTTCTAAAATTCGTTTTCCATTTTTCTTCACTC-TCTT 60 |||||||||||||||||||||||||||||||| ||||||| |||||||||| ||| | || Sbjct 1 AAAAGATAAAATCTCAAACTTTCTTCTAAAATCCGTTTTCTATTTTTCTTCTCTCTTTTT 60 Query 61 TCCGGTGACGCCATGAACGCCGCCGTGTTTAGTCCTTCTGCTTTATCTCTCCCTATCTCC 120 ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| Sbjct 61 TCCGGTGACGCCATGAACGCCGCCGTGTTTAGTGCTTCTGCTTTATCTCTTCCTATCTCC 120 Query 121 TTCTCTAAAACCCGATCCTCTTTTCTCTCCAGAAAGAAGGGCGTGAAAGGAGAATTTAGG 180 ||||||||||| |||| |||| |||||||||||||||||| |||||||||||||| ||| Sbjct 121 TTCTCTAAAACAAGATCATCTTATCTCTCCAGAAAGAAGGGAGTGAAAGGAGAATTCAGG 180 Query 181 GTATTTGCTGTGTTTGGTGATGAGAGTGGATTAGTTGAGAAGAAGAGTCAATGGAGACCT 240 ||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||| Sbjct 181 GTATTTGCTGTATTTGGTGATGAGAGTGGTTTACTTGAGAAGAAGAGTCAATGGAGACCT 240 Query 241 TTGTTTGATGTGGAGGATCCTAGATCAAAAGCTCCTCCTTATAAAGGAAAGTTTTTAGAT 300 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 241 TTGTTTGATGTGGAGGATCCTAGATCAAAAGCTCCTCCATATAAAGGAAAGTTTTTAGAT 300 Query 301 GTTAATCAAGCTATTGAAGTTGCTAGGTTTGATATTCAATACTTGGATTGGCGTGCTCGT 360 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 301 GTTAATCAAGCTATTGAAGTTGCTAGATTTGATATTCAATACTTGGATTGGCGTGCTCGT 360 Query 361 CAAGATCTTCTTACCATTATGATTCTTCATGACAAGGTTGTTGATGTACTTAATCCTCTA 420 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 361 CAAGATCTTCTTACCATCATGATTCTTCATGACAAGGTTGTTGATGTACTTAATCCTCTA 420 Query 421 GCTCGTGAGTACAAGTCCATCGGTACAGTGAAGAAAGAACTAGCTGGATTGCAGGAAGAA 480 ||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||| Sbjct 421 GCTCGTGAGTACAAGTCGATCGGCACTGTGAAGAAAGAACTAGCTGGATTGCAGGAAGAA 480 Query 481 TTATCGAAAGCACACCAACAGGTTCATATATCTGAAGCAAGGGTTTCGACTGCTTTAGAC 540 || |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct 481 TTGTCGAAAGCACACCAACAGGTTCATATATCTGAAGCACGGGTTTCAACTGCTTTAGAC 540 Query 541 AAGTTAGCCCACATGGAAGAATTGGTTAATGATAGGTTGTTACCTGGCAGAGTTGTAACG 600 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 AAGTTAGCTCACATGGAAGAATTGGTTAATGATAGGTTGTTACCTGGCAGAGTTGTAACG 600 Query 601 GAATTAGATAAACCCTCCTCTTCAACCACTGCTTCTGCTGTCGAGTTAGATAGGGAAAAG 660 |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 601 GAATTAGATAAACCCTCCACTTCAGCCACTGCTTCTGCTGTCGAGTTAGATAGGGAAAAG 660 Query 661 ACAAACACGGGTGCGAAAAGCTTGAATGTTTCTGGTCCGGTTCCGCCTTATAGTCCACAC 720 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 ACAAACACGGGTGCGAAAAGCTTGAATGTTTCTGGTCCGGTTCCGCCTTATAGTCCACAA 720 Query 721 TTGAAGAATTTTTGGTATCCCGTTGCTTTCACTGCAGATCTCAAGCATGATACAATGGTA 780 |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 721 TTGAAGAACTTTTGGTATCCCGTTGCTTTCACTGCAGATCTCAAGCATGACACAATGGTA 780 Query 781 CCAATTGAATGCTTTGAACAACCATGGGTTATCTTTAGGGGTGAAGACGGGAAACCAGGA 840 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 781 CCAATTGAATGCTTTGAACAACCATGGGTTATATTTAGGGGTGAAGACGGGAAACCAGGA 840 Query 841 TGTGTACGGAATACATGTGCGCATAGAGCATGTCCTCTTGATCTTGGCACAGTGAACGAG 900 ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 841 TGTGTACGGAATACATGTGCGCATAGAGCCTGTCCTCTTGATCTTGGCACCGTGAACGAG 900 Query 901 GGACGTATTCAATGTCCGTACCATGGATGGGAATACTCAACCGATGGAGAATGTAAGAAG 960 || |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 901 GGTCGTATTCAATGTCCTTACCACGGATGGGAATACTCAACCGATGGAGAATGTAAGAAG 960 Query 961 ATGCCGTCTACAAAGTTACTGAAGGTGAAGATCAAA-TCATTACCTTGTCTTGAACAAGA 1019 ||||| ||||||||| |||| ||||||||||| ||| || || ||||||||||||||||| Sbjct 961 ATGCCCTCTACAAAGCTACTAAAGGTGAAGAT-AAAGTCGTTGCCTTGTCTTGAACAAGA 1019 Query 1020 AGGTATGATCTGGATTTGGCCCGGTGATGAGCCACCTGCACCTATACTTCCTTCTTTACA 1079 ||| ||||||||||| ||||| || ||||||||||||||||||| ||| || | |||||| Sbjct 1020 AGGCATGATCTGGATCTGGCCTGGCGATGAGCCACCTGCACCTACACTACCATGTTTACA 1079 Query 1080 GCCTCCATCAGGGTTTTTAATTCATGCTGAGCTTGTAATGGACCTCCCGGTGGAACACGG 1139 ||||||||||||||||||||| ||||| |||||||| ||||| ||||||||||||||||| Sbjct 1080 GCCTCCATCAGGGTTTTTAATCCATGCCGAGCTTGTTATGGATCTCCCGGTGGAACACGG 1139 Query 1140 TTTACTTCTAGATAATCTCTTGGATCTTGCTCATGCCCCATTCACTCATACATCCACTTT 1199 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1140 TTTACTTCTAGATAATCTCTTGGATCTTGCTCATGCCCCATTTACTCATACATCCACTTT 1199 Query 1200 TGCAAAAGGCTGGAGTGTCCCAAGTTTGGTGAAGTTTTTAACACC-TACCTCGGGTCTCC 1258 |||||||||||||||||||||||| ||||||||||| |||||||| | |||| |||||| Sbjct 1200 TGCAAAAGGCTGGAGTGTCCCAAGCTTGGTGAAGTTCTTAACACCAT-CCTCAAGTCTCC 1258 Query 1259 AAGGATACTGGGATCCATATCCAATCGATATGGAATTTAAACCACCGTGTATTGTTTTAT 1318 |||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||| Sbjct 1259 AAGGATACTGGGATCCGTATCCAATCGATATGGAATTTAAACCTCCTTGTATTGTTTTAT 1318 Query 1319 CGACAATCGGGATATCAAAACCCGGGAAACTAGAAGGCAAAAGCACACAGCAGTGTGCAA 1378 ||||||||||||| || |||||||||||||||||||| ||||||||| |||||||||||| Sbjct 1319 CGACAATCGGGATCTCCAAACCCGGGAAACTAGAAGGAAAAAGCACAAAGCAGTGTGCAA 1378 Query 1379 CACATCTTCATCAACTCCATGTCTGTTTACCTTCTTCTAAAAACAAGACAAGACTTCTAT 1438 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1379 CACATCTTCATCAACTCCATGTCTGTTTACCTTCTTCCAAAAACAAGACAAGACTTCTAT 1438 Query 1439 ACCGAATGTCACTAGACTTTGCTCCTATATTAAAGAATCTTCCATTCATGGAACATCTGT 1498 ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| | Sbjct 1439 ACCGAATGTCACTAGACTTCGCTCCTATATTGAAGAATCTTCCATTCATGGAACATCTCT 1498 Query 1499 GGAGACATTTCGCTGAACAGGTCTTAAACGAAGATCTACGGCTAGTTTTAGGACAACAAG 1558 ||||||||||||||||||||||||||||||||||| | || |||||| ||||||| |||| Sbjct 1499 GGAGACATTTCGCTGAACAGGTCTTAAACGAAGATTTGCGACTAGTTATAGGACAGCAAG 1558 Query 1559 AACGGATGTTAAACGGAGCAAACATATGGAATTTACCAGTTGCTTATGACAAGCTCGGAG 1618 |||||||| | || || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1559 AACGGATGCTGAATGGTGCAAACATATGGAATTTACCAGTTGCTTATGACAAGCTCGGAG 1618 Query 1619 TTCGGTATAGACTATGGAGGAACGCAGTAGATCGTGGCGATGATAAACTACCTTTCTCCG 1678 | ||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||| Sbjct 1619 TCCGGTATAGACTATGGAGAAACGCGGTAGATCGTGGCGATGATAAACTACCCTTCTCCG 1678 Query 1679 GCTAACTGTTATTAAAGAAATCTAATGGAAGTTTTTGCAGCTCC--TTATTCACCAGCAA 1736 ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1679 GCTAACTGTTATTGAAGAAATCTAATGGAAGTTTTTGCAGCTCCCCTTATTCACCAGCAA 1738 Query 1737 CCTCAGACAAGTGTAGGTTATTAATCTGGTTTATTCTCACCGAAGAAAGAGCTTTGCCGA 1796 ||||||| ||||||||||||||| ||||||| |||||||||| |||| |||||||||||| Sbjct 1739 CCTCAGAAAAGTGTAGGTTATTA-TCTGGTTCATTCTCACCGCAGAA-GAGCTTTGCCGA 1796 Query 1797 GTAAAAGATCTGGAGTTTGTGGATTCATCTAAAAAACCGATGAAACAAAGAACTTTTGCG 1856 |||| | |||||||||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct 1797 GTAACA-ATCTGGAGTTTGTGGATTCATCTAGAAAAC-GATGAAACAAAGAACTTTTGCG 1854 Query 1857 TAGATAAAAGGACAACATCCACTGTAAATCCAAAGGAGATATATTGTTATTCATTTTTCC 1916 |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1855 TAGATAAAAG-ACAACATCCACTGTAAATCAAAAGGAGATATATTGTTATTCATTTTTCC 1913 Query 1917 CTGTGTACAGTTCACTCTCTATGAGAAATTGAATATCAGTTTTCCCCACTAAACTAATGT 1976 |||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||| Sbjct 1914 CTGTGTACAGTTCACTTTCTATGAGAAATTGAATATCAGTTTTCCCCACTAAATTGATGT 1973 Query 1977 CTTCTAAGAACC 1988 |||||||||||| Sbjct 1974 CTTCTAAGAACC 1985 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 74733060690 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5