BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G44575.1
Length=1059
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922911 jgi|Araly1|922911|scaffold_104192.1 1393 0.0
> Ahg922911 jgi|Araly1|922911|scaffold_104192.1
Length=901
Score = 1393 bits (754), Expect = 0.0
Identities = 842/885 (95%), Gaps = 4/885 (0%)
Strand=Plus/Plus
Query 72 AATGGCTCAAACCATGCTGCTTACTTCAGGCGTCACCGCCGGCCATTTTTTGAGGAACAA 131
||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||
Sbjct 20 AATGGCTCAAACCATGCTGCTTACTTCCGGCGTCACCGCCGGCCAATTCTTGAGGAACAA 79
Query 132 GAGCCCTTTGGCTCAGCCCAAAGTTCACCATCTCTTCCTCTCTGGAAACTCTCCGGTTGC 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 80 GAGCCCTTTGGCTCAGCCCAAAGTTCACCATCTCTTCCTCTCTGGAAACTCTCCGGTTGC 139
Query 192 ACTACCATCTAGGAGACAATCATTCGTTCCTCTCGCTCTCTTCAAACCCAAAACCAAAGC 251
||||||||| | |||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 140 TCTACCATCTCGTAGACAATCATTCGTTCCTCTTGCTCTCTTCAAATCCAAAACCAAAGC 199
Query 252 TGCTCCTAAAAAGGTTGAGAAGCCGAAGAGCAAGGTTGAGGATGGCATCTTTGGAACGTC 311
|||||| |||||||||||||||||||||| |||||||||||||| |||||||| |||||
Sbjct 200 TGCTCCCAAAAAGGTTGAGAAGCCGAAGAAAAAGGTTGAGGATGGGATCTTTGGTACGTC 259
Query 312 TGGTGGGATTGGTTTCACAAAGGCGAATGAGCTATTCGTTGGTCGTGTTGCTATGATCGG 371
|||||||| |||||||| |||||||||||||||||||| || ||||| |||||||||||
Sbjct 260 AGGTGGGATAGGTTTCACGAAGGCGAATGAGCTATTCGTGGGCCGTGTCGCTATGATCGG 319
Query 372 TTTCGCTGCATCGTTGCTT-GGTGAGGCGTTGACGGGAAAAGGGATATTAGCTCAGCTGA 430
|||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||
Sbjct 320 TTTCGCTGCATCGTTG-TTGGGTGAGGCGTTGACGGGAAAAGGAATATTAGCTCAGCTGA 378
Query 431 ATCTGGAGACAGGGATACCGATTTACGAAGCAGAGCCATTGCTTCTCTTCTTCATCTTGT 490
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 379 ATCTGGAGACAGGGATACCAATTTACGAAGCAGAGCCATTGCTTCTCTTCTTCATCTTAT 438
Query 491 TCACTCTGTTGGGAGCCATTGGAGCTCTCGGAGACAGAGGAAAATTCGTCGACGATCCTC 550
||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 439 TCACTTTGTTGGGGGCCATTGGAGCTCTCGGAGACAGAGGACAATTCGTCGACGATCCTC 498
Query 551 CCACCGGGCTCGAGAAAGCCGTCATTCCTCCCGGCAAAAACGTCCGATCTGCCCTCGGTC 610
||||||| ||||| |||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 499 CCACCGGACTCGAAAAAGCCGTCATTCCTCCCGGGAAAAGTGTCCGATCTGCCCTCGGTC 558
Query 611 TCAAAGAACAAGGTCCATTGTTTGGGTTCACGAAGGCGAACGAGTTATTCGTAGGAAGAT 670
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 559 TCAAAGAACAAGGTCCATTGTTTGGGTTCACAAAGGCGAACGAGCTATTCGTAGGAAGAT 618
Query 671 TGGCACAGTTGGGAATAGCATTTTCACTGATAGGAGAGATTATTACCGGGAAAGGAGCAT 730
|||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 619 TGGCACAGCTGGGAATAGCATTTTCACTGATCGGAGAGATTATAACCGGGAAAGGAGCAT 678
Query 731 TAGCTCAACTCAACATTGAGACCGGTATACCAATTCAAGATATCGAACCACTTGTCCTCT 790
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 679 TAGCTCAACTCAACATTGAGACCGGTATACCAATTCAAGATATCGAACCACTCGTCCTCT 738
Query 791 TAAACGTTGCTTTCTTCTTCTTCGCTGCCATTAATCCTGGTAATGGAAAATTCATCACCG 850
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 739 TAAATGTTGCTTTCTTCTTCTTTGCTGCCATTAATCCTGGTAATGGAAAATTCATCACCG 798
Query 851 ATGATGGTGAAGAAAGCTAAATTATCATGTACTTAAATTTAGTAGAGAGTGTGTGACCTT 910
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 799 ATGATGGTGAAGAAAGCTAAATTATCATGTACTTAAATTTAGTAGAG--TGTGTGACCAT 856
Query 911 CTCTTCATGTTGAGACAAAAGGAAATGGACAGCTTAAATTGTTGT 955
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 857 CTCTTCATGTTGAGACAAAAGGAAATGGACAGCTTAAATTGTTGT 901
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39419096178
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5