BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G44920.1 Length=1113 Score E Sequences producing significant alignments: (Bits) Value Ahg913657 jgi|Araly1|913657|Al_scaffold_0001_3911 1188 0.0 > Ahg913657 jgi|Araly1|913657|Al_scaffold_0001_3911 Length=780 Score = 1188 bits (643), Expect = 0.0 Identities = 735/780 (94%), Gaps = 3/780 (0%) Strand=Plus/Plus Query 12 ATGAGAATGTTAGTTCTTCGCACTCCCACCGGACCTGTCTCCGCCGTCAGATTCATCACC 71 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1 ATGAGAATGTTAGTTCTTCGCACTCCCACCGGACCTGTCTCCGCCGTCAAATTCATCACC 60 Query 72 AAATCCAAACCTTCTCCTTTCTCTTCTCCCGATTCATGGCTCCTCCCTGCACCAAACACT 131 ||||||||||||||| |||||||| |||||||||||||||| |||| || ||||||||| Sbjct 61 AAATCCAAACCTTCTGCTTTCTCTAGTCCCGATTCATGGCTCGTCCCCGCTCCAAACACT 120 Query 132 CACCGGAGTCGTCCCCGCGTCGTCCTCGCTCTCTCTAACCCCGACGGAAGCGTCAACTCA 191 | |||||| || | ||||||||||||||||||||||||||||||||||||||||| || Sbjct 121 CGCCGGAGACGGCAACGCGTCGTCCTCGCTCTCTCTAACCCCGACGGAAGCGTCAAGTCC 180 Query 192 AAACCCTCAACCTCAGCTTCTCAAATCCCTTCTTCAGGAGATGAAACAGTTTTCGTGGGT 251 |||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||| Sbjct 181 AAACCCTCAACCTCAGTTTCTCAAATCCCGTCTTCAGGAGATGACACAGTTTTCGTGGGT 240 Query 252 CAAGATAATGTTCCTCTCGAGGGCGTGATTCAATTCGATAAA-C--CGTCATCTACTTCA 308 ||||| ||||||||||||||||| |||||||| ||||||||| | | |||||||||||| Sbjct 241 CAAGAGAATGTTCCTCTCGAGGGTGTGATTCAGTTCGATAAACCATCATCATCTACTTCA 300 Query 309 TCTTCTAACATTACCAAATGGGGTCGTGTGGCTTTACTTGCGGGTGGTGATGTTTTAGCT 368 ||||||||||||||||||||||||||||| || |||||||| |||||||||||||| ||| Sbjct 301 TCTTCTAACATTACCAAATGGGGTCGTGTTGCGTTACTTGCTGGTGGTGATGTTTTGGCT 360 Query 369 CTGCTTATCTTCTCTGCCATTGGGAGATTTAGCCATGGTTTCCCTGTTTTTTCTCTTGAT 428 ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| Sbjct 361 CTGCTTATCTTCTCTGCAATTGGGAGATTTAGCCATGGTTTCCCTGTTTTTTCTATTGAT 420 Query 429 ACTCTCCACACAGCTGACCCTTTCATTGCGGGATGGTTTCTGAGTGCTTATTTCTTGGGG 488 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 421 ACTCTCCACACAGCTGACCCTTTCATTGCGGGATGGTTTCTGAGTGCATATTTCTTGGGG 480 Query 489 GGTTATGCGGAGGAAGGACGAGGAATGAAGGGAAAGTCTAAAGCTGTGGTTGCAGCTGCG 548 ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 481 GGTTATGCGGAGGAAGGGCGAGGAATGAAGGGTCGGTCTAAAGCTGTGGTTGCAGCTGCC 540 Query 549 AAATCTTGGATTGTCGGAACTCCGCTTGGAATTATCATTAGGTCAGCTTCATCAGGTCAC 608 |||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||| Sbjct 541 AAATCTTGGATTGTCGGAGCTCCGCTTGGAATTATCATTAGATCAGCTTCATCGGGTCAC 600 Query 609 ATTCCGGCATATAGCTTTGTGTTGGTGACAATGGGAAGTACTGCTGTTTTACTTATAGGA 668 |||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 601 ATTCCGGCTTCTAGCTTTGTGTTGGTGACAATGGGAAGTACTGCTGTTTTACTTATCGGA 660 Query 669 TGGAGAGCATTGTTATTCAGTGTGCTTCCTACAGAGTCCAAGAAGAAAGATGATACGTAT 728 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 661 TGGAGAGCATTGTTATTCAGTGTGCTTCCAACAGAGTCCAAGAAGAAAGATGATACGTAT 720 Query 729 CGGAAGGGTAGTGCATTCGAGCTATTTGAGTTGCTTACTTCATTGATAAGACGATGGTGA 788 |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 721 CGGAAGGGCAGTGCATTCGAGCTATTTGAGTTGCTTACTTCATTGATAAGACGGTGGTGA 780 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41477733696 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5