BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G45000.1
Length=1558
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922941 jgi|Araly1|922941|scaffold_104222.1 2058 0.0
Ahg494702 jgi|Araly1|494702|fgenesh2_kg.8__518__AT5G43010.1 1465 0.0
> Ahg922941 jgi|Araly1|922941|scaffold_104222.1
Length=1240
Score = 2058 bits (1114), Expect = 0.0
Identities = 1198/1240 (97%), Gaps = 0/1240 (0%)
Strand=Plus/Plus
Query 60 AATTCTGAGATCTGTAAAAGATGAGCGACGGAGACGACGCTGCTAGACGCCGTACCGCGG 119
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1 AATTTTGAGATCTGTAAAAGATGAGCGACGGAGACGACGCCGCTAGACGCCGTACCGCGG 60
Query 120 CGGTGACTGATTACCGGAAGAAGCTCCTTCATCACAAGGAGCTCGAATCCCGTGTCCGAA 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 61 CGGTGACTGATTACCGGAAGAAGCTCCTTCATCACAAGGAGCTCGAATCCCGTGTCCGCA 120
Query 180 CAGCTAGGGAGAATTTAAGAGCAGCTAAGAAGGAATTCAACAAAACTGAGGATGATTTGA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CAGCTAGGGAGAATTTAAGAGCAGCTAAGAAGGAATTCAACAAAACTGAGGATGATTTGA 180
Query 240 AGTCTCTTCAAAGCGTTGGCCAGATTATTGGAGAAGTACTACGTCCTCTTGATAACGAGC 299
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 181 AGTCTCTTCAAAGTGTTGGTCAGATTATTGGAGAAGTACTACGTCCTCTTGATAATGAGC 240
Query 300 GATTGATTGTTAAGGCAAGTAGTGGCCCTCGTTATGTGGTGGGTTGTCGTAGCAAGGTGG 359
|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
Sbjct 241 GATTGATTGTTAAGGCGAGTAGTGGTCCTCGTTATGTGGTGGGTTGTCGTAGCAAGGTTG 300
Query 360 ACAAGGAAAAGCTTACTTCTGGAACTCGAGTTGTCCTGGATATGACTACGCTGACAATTA 419
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 301 ACAAGGAAAAGCTGACTTCGGGAACTCGAGTTGTCCTGGATATGACTACGCTGACAATAA 360
Query 420 TGCGAGCCCTTCCTCGTGAAGTTGATCCTGTTGTTTATAACATGTTGCATGAAGATCCAG 479
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 361 TGCGAGCCCTTCCTCGTGAAGTCGATCCTGTTGTTTATAACATGTTGCATGAAGATCCAG 420
Query 480 GCAACATTAGTTACTCAGCTGTGGGTGGTTTAGGTGATCAGATCAGAGAACTTAGGGAAT 539
| |||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||
Sbjct 421 GTAACATTAGTTACTCGGCTGTGGGTGGTTTAGGTGATCAGATCAGAGAACTCAGAGAAT 480
Query 540 CTATTGAGCTGCCTCTCATGAATCCTGAACTTTTCCTTAGAGTTGGGATTAAACCTCCTA 599
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 481 CTATTGAGCTGCCTCTCATGAATCCTGAACTTTTCCTTAGAGTAGGGATTAAACCTCCTA 540
Query 600 AGGGTGTCCTTCTGTATGGACCTCCGGGTACTGGAAAAACTCTACTAGCTAGGGCTATTG 659
||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||
Sbjct 541 AGGGTGTCCTTCTGTATGGACCTCCGGGTACTGGAAAAACTTTATTAGCTAGGGCCATTG 600
Query 660 CCAGCAATATCGACGCCAACTTCTTGAAGGTTGTATCTAGTGCAATCATAGACAAATACA 719
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 601 CCAGCAATATCGACGCCAACTTCTTGAAGGTTGTATCAAGTGCAATCATAGACAAATACA 660
Query 720 TTGGAGAAAGTGCTAGGTTGATTCGAGAAATGTTTAACTATGCTCGTGAACATCAGCCTT 779
|||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||
Sbjct 661 TTGGAGAAAGTGCTAGGTTGATCCGAGAAATGTTTAACTACGCTCGTGAACACCAGCCTT 720
Query 780 GTATCATTTTCATGGATGAAATCGATGCTATTGGTGGACGCCGTTTTAGTGAAGGAACTA 839
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 721 GTATCATTTTCATGGATGAAATCGATGCTATTGGTGGGCGCCGTTTTAGTGAAGGAACTA 780
Query 840 GTGCTGATCGTGAAATTCAAAGAACACTTATGGAGTTACTTAACCAGCTTGATGGGTTTG 899
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 781 GTGCTGATCGTGAAATCCAAAGAACACTTATGGAGTTACTCAACCAGCTTGATGGGTTTG 840
Query 900 ACCAACTTGGAAAGGTGAAAATGATAATGGCCACCAACAGGCCGGATGTTCTTGATCCAG 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 ACCAACTTGGAAAGGTGAAAATGATAATGGCCACCAACAGGCCGGATGTTCTTGATCCAG 900
Query 960 CACTTCTCCGTCCGGGTAGGTTAGATAGAAAGATCGAGATCCCGTTGCCAAATGAACAAT 1019
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 901 CACTTCTCCGTCCTGGTAGGTTAGATAGAAAGATTGAGATCCCGTTGCCAAATGAACAAT 960
Query 1020 CAAGAATGGAAATCCTCAAGATCCACGCATCTGGCATTGCCAAGCATGGAGAAATAGACT 1079
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 961 CAAGAATGGAAATCCTCAAGATCCACGCCTCTGGTATTGCCAAGCATGGAGAAATAGACT 1020
Query 1080 ATGAGGCTATCGTGAAACTTGGAGAGGGTTTCAATGGTGCCGATCTGCGTAACATATGCA 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 ATGAGGCTATCGTGAAACTTGGAGAGGGTTTCAATGGTGCCGATCTGCGTAACATATGCA 1080
Query 1140 CTGAAGCTGGAATGTTCGCAATCAGAGCAGAGCGTGACTATGTAATACATGAAGACTTCA 1199
|||||||||||||||| || || ||||| ||||||||||||||||| |||||||||||||
Sbjct 1081 CTGAAGCTGGAATGTTTGCGATAAGAGCGGAGCGTGACTATGTAATCCATGAAGACTTCA 1140
Query 1200 TGAAGGCTGTGAGAAAGCTGAGCGAGGCCAAGAAGCTTGAGTCGAGCTCTCACTATAACG 1259
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1141 TGAAGGCGGTGAGAAAGCTGAGCGAGGCCAAGAAACTTGAGTCGAGCTCTCACTATAACG 1200
Query 1260 CGGATTTTGGGAAAGAGTAAGAAAAGAATAAGCTCAGAGA 1299
||||||| |||||||||||||||||||| ||||||||||
Sbjct 1201 CGGATTTCGGGAAAGAGTAAGAAAAGAACGAGCTCAGAGA 1240
> Ahg494702 jgi|Araly1|494702|fgenesh2_kg.8__518__AT5G43010.1
Length=1521
Score = 1465 bits (793), Expect = 0.0
Identities = 1056/1185 (89%), Gaps = 9/1185 (1%)
Strand=Plus/Plus
Query 103 TAGACGCCGTACCGCGGCGGTGACTGATTACCGGAAGAAGCTCCTTCATCACAAGGAGCT 162
||||||||||||||| ||||| | || |||||||| |||||||| || || ||||| ||
Sbjct 143 TAGACGCCGTACCGCTGCGGTCTCCGAGTACCGGAAAAAGCTCCTCCAACATAAGGAACT 202
Query 163 CGAATCCCGTGTCCGAACAGCTAGGGAGAATTTAAGAGCAGCTAAGAAGGAATTCAACAA 222
|||||||||||| |||||||||||||| || ||||||| |||||| ||||| ||||||||
Sbjct 203 CGAATCCCGTGTTCGAACAGCTAGGGACAACTTAAGAGGAGCTAAAAAGGAGTTCAACAA 262
Query 223 AACTGAGGATGAT-TTGAAGTCTCTTCAAAGCGTTGGCCAGATTATTGGAGAAGTACTAC 281
||||||||||||| || |||||||||||||| ||||| ||||||||||||||||| || |
Sbjct 263 AACTGAGGATGATCTT-AAGTCTCTTCAAAGTGTTGGGCAGATTATTGGAGAAGTTCTTC 321
Query 282 GTCCTCTTGATAACGAGCGATTGATTGTTAAGGCAAGTAGTGGCCCTCGTTATGTGGTGG 341
| ||||| ||||| || |||||||||| || || || ||||| ||||||||||||||||
Sbjct 322 GACCTCTGGATAATGAAAGATTGATTGTCAAAGCGAGCAGTGGTCCTCGTTATGTGGTGG 381
Query 342 GTTGTCGTAGCAAGGTGGACAAGGAAAAGCTTACTTCTGGAACTCGAGTTGTCCTGGATA 401
|||| || ||||| || || ||||||||||| || || |||||||||||||| |||||||
Sbjct 382 GTTGCCGAAGCAAAGTCGATAAGGAAAAGCTAACCTCAGGAACTCGAGTTGTTCTGGATA 441
Query 402 TGACTACGCTGACAATTATGCGAGCCCTTCCTCGTGAAGTTGATCCTGTTGTTTATAACA 461
|||| || || ||||| |||||||||||||| || |||||||||||||||||||||||||
Sbjct 442 TGACAACACTAACAATAATGCGAGCCCTTCCCCGAGAAGTTGATCCTGTTGTTTATAACA 501
Query 462 TG-TTGCATGAAGATCCAGGCAACATTAGTTACTCAGCTGTGGGTGGTTTAGGTGATCAG 520
|| || |||||||| |||||||||||||| || || || || ||||||||||||||||||
Sbjct 502 TGCTT-CATGAAGACCCAGGCAACATTAGCTATTCCGCGGTTGGTGGTTTAGGTGATCAG 560
Query 521 ATCAGAGAACTTAGGGAATCTATTGAGCTGCCTCTCATGAATCCTGAACTTTTCCTTAGA 580
||||||||||| ||||||||||||||||| |||||||||||||| || |||||||| |||
Sbjct 561 ATCAGAGAACTCAGGGAATCTATTGAGCTACCTCTCATGAATCCCGAGCTTTTCCTCAGA 620
Query 581 GTTGGGATTAAACCTCCTAAGGGTGTCCTTCTGTATGGACCTCCGGGTACTGGAAAAACT 640
|| ||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 621 GTAGGGATCAAACCTCCAAAGGGTGTTCTTCTGTATGGACCTCCGGGTACTGGAAAAACT 680
Query 641 CTACTAGCTAGGGCTATTGCCAGCAATATCGACGCCAACTTCTTGAAGGTTGTATCTAGT 700
|||||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct 681 CTACTAGCGAGGGCTATAGCCAGCAACATCGATGCCAACTTCTTGAAGGTTGTATCTAGT 740
Query 701 GCAATCATAGACAAATACATTGGAGAAAGTGCTAGGTTGATTCGAGAAATGTTTAACTAT 760
||||| |||||||||||||||||||||||||||||| |||| || || ||||||||||||
Sbjct 741 GCAATAATAGACAAATACATTGGAGAAAGTGCTAGGCTGATCCGGGAGATGTTTAACTAT 800
Query 761 GCTCGTGAACATCAGCCTTGTATCATTTTCATGGATGAAATCGATGCTATTGGTGGACGC 820
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 801 GCCCGTGAACACCAGCCTTGTATCATTTTCATGGATGAAATCGATGCTATTGGTGGGCGT 860
Query 821 CGTTTTAGTGAAGGAACTAGTGCTGATCGTGAAATTCAAAGAACACTTATGGAGTTACTT 880
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 861 CGTTTTAGTGAGGGAACTAGTGCTGATCGTGAAATTCAAAGAACACTTATGGAGTTACTC 920
Query 881 AACCAGCTTGATGGGTTTGACCAACTT-GGAAAGGTGAAAATGATAATGGCCACCAACAG 939
|| |||||||||||||||||| ||| | |||||||||||||||||||||||||| |||||
Sbjct 921 AATCAGCTTGATGGGTTTGAC-AACCTCGGAAAGGTGAAAATGATAATGGCCACAAACAG 979
Query 940 GCCGGATGTTCTTGATCCAGCACTTCTCCGTCCGGGTAGGTTAGATAGAAAGATCGAGAT 999
||| ||||| |||||||| || |||||||||||||| ||||||||||| ||||| |||||
Sbjct 980 GCCAGATGTGCTTGATCCTGCGCTTCTCCGTCCGGGAAGGTTAGATAGGAAGATTGAGAT 1039
Query 1000 CCCGTTGCCAAATGAACAATCAAGAATGGAAATCCTCAAGATCCACGCATCTGGCATTGC 1059
||| ||||||||||| |||||||||||||| || ||||||||||| ||| |||| || ||
Sbjct 1040 CCCTTTGCCAAATGAGCAATCAAGAATGGATATTCTCAAGATCCATGCAGCTGGTATCGC 1099
Query 1060 CAAGCATGGAGAAATAGACTATGAGGCTATCGTGAAACTTGGAGAGG---GTTTCAATGG 1116
||| ||||| ||||| ||||| |||||||| || ||||||| |||| ||||||||||
Sbjct 1100 CAAACATGGTGAAATTGACTACGAGGCTATTGTCAAACTTGCTGAGGTTTGTTTCAATGG 1159
Query 1117 TGCCGATCTGCGTAACATATGCACTGAAGCTGGAATGTTCGCAATCAGAGCAGAGCGTGA 1176
||| |||||||||||||||||||| |||||||||||||| |||||| |||||||||| ||
Sbjct 1160 TGCTGATCTGCGTAACATATGCACGGAAGCTGGAATGTTTGCAATCCGAGCAGAGCGGGA 1219
Query 1177 CTATGTAATACATGAAGACTTCATGAAGGCTGTGAGAAAGCTGAGCGAGGCCAAGAAGCT 1236
|||||| || |||||||| ||||||||||| ||||||||||| || ||||| ||||| ||
Sbjct 1220 CTATGTGATCCATGAAGATTTCATGAAGGCGGTGAGAAAGCTCAGTGAGGCAAAGAAACT 1279
Query 1237 TGAGTCGAGCTCTCACTATAACGCGGATTTTGGGAAAGAGTAAGA 1281
|||||||| || ||||||||||| |||||||| ||||||| |||
Sbjct 1280 CGAGTCGAGTTCGCACTATAACGCTGATTTTGGAAAAGAGTGAGA 1324
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58354255340
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5